Oncorhynchus tshawytscha (Chinook salmon): 112240032
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Entry
112240032 CDS
T05605
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112240032
04518 Integrin signaling
112240032
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112240032
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112240032
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112240032
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Ortholog
Paralog
GFIT
Motif
Pfam:
COLFI
Collagen
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
112240032
NCBI-ProteinID:
XP_042180766
LinkDB
All DBs
Position
LG07:complement(65788544..65874261)
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AA seq
1103 aa
AA seq
DB search
MFSFVDSRTVLLLVATQVVLLAVVKCQEEDQDLGSCMQDGQRYSDKDVWKPEPCRICVCD
TGTVLCDEIICEEIKDCPKPEIPFGECCPICVRDGEAPPSGAPGAKGQKGEPGDITDVVG
PRGPGGPMGPPGEQGPRGDRGDKGDKGSPGPRGRDGEPGTPGNPGPPGPSGPNGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGSAG
PLGPRGPPGPSGKPGDDGEAGKPGKGGDRGPSGPQGARGFPGTPGLPGIKGHRGYPGLDG
LKGEGGAAGATGPRGERGFPGERGGAGPQGLQGPRGLPGTPGTDGPKGAIGPGGASGAQG
PPGLQGMPGERGASGIPGPKGDRGDNGEKGPEGASGKDGSRGLTGPIGPPGPAGPNGEKG
ESGPSGPSGAAGARGAPGDRGETGPPGPAGFAGPPGSDGQPGVKGEQGEGGQKGDAGAPG
PQGPSGAPGPSGPTGVSGPKGARGAQGPSGATGFPGAAGRVGPPGPNGNPGAAGPSGPAG
KDGPKGVRGDGGPPGRQGDAGLRGAAGSPGEKGDAGEDGPSGPDGPSGPSGLAGQRGIVG
LPGQRGERGFPGLPGPSGEPGKQGSPGGSGDRGPPGPVGPPGLTGPAGEPGREGNAGSDG
PPGRDGATGIKGDRGNTGPAGAPGSPGANGSPGPVGPTGKQGDRGEAGAQGPAGPAGPAG
ARGMAGPQGPRGDKGEAGEGGERGQKGHRGFTGLQGLPGPPGQAGDQGASGPAGPSGSRG
PPGPIGPHGKDGSNGMPGPIGPPGPRGRSGETGPSGPPGNSGPPGPPGPPGPGIDMSAFA
GLSQPEKSPDPLRYMRADQASGNLRTHDAEVDATLKSLNNQIENIRSPEGSKKNPARTCR
DLKLCHPDWKSGEYWIDPNQGCTIDAIKVYCNMETGESCVYPKPASIPKKNWWSSKSKAA
KHVWFGETMNGGFHFSYGDDSLAANTASIQMTFLRLLSTEASQNLTYHCKNSVAYMDGAT
GNLKKAVLLQGSNDVEIRAEGNSRFTYTVMQDGCTKHTGAWGKTVIDYRSQKTSRLPIVD
IAPMDIGGADQEFGVDVGAVCFL
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcgaggactgtactgctacttgtagcaactcaagtcgttcta
ttagcagttgtcaaatgtcaggaagaagaccaggacctaggcagctgtatgcaggacgga
cagcgctatagtgacaaggacgtatggaaaccagagccgtgtcgtatttgtgtgtgcgac
acgggaactgtcctgtgtgatgaaataatctgcgaggagattaaagactgccccaaacct
gagatcccattcggagagtgttgccccatctgcgtgcgggacggggaagcccccccaagt
ggggccccgggagctaagggtcagaagggggaaccaggagatatcacagatgtcgtagga
ccaagaggacctggaggccctatgggccccccaggagagcagggaccacgcggagacaga
ggagacaaaggcgataagggcagtcccgggccccgtggcagagatggtgagcctggtacc
cctggtaaccccggcccccccggtccctcaggacctaacggacctcccggccttggagga
aactttgctgctcagatggctggaggatttgacgagaaggctggcggagcacagatgggc
gtgatgcaaggaccaatgggccctatgggtcctcgagggccacctggcccctctggagct
cctggcccacaaggtttccaaggcaaccccggagaggctggagagcccggatcagctggc
ccgttgggtccccgtggtccacctggaccctctggtaaacctggagatgacggtgaggct
ggcaaacccggaaaaggtggtgatcgtggaccttctggtcctcagggagctcgtggattc
ccaggaactcccggtctgcctggaatcaaagggcatagaggttatccaggtcttgatgga
ctcaagggagagggtggagctgctggtgccactggaccaagaggtgagcgtggtttccca
ggagagagaggaggtgctgggcctcaggggctgcagggaccccgtggtcttcctggaact
cctggaactgacggacctaagggcgcgatcggaccaggtggtgcatcgggtgcccaggga
ccccccggtctgcaaggtatgcccggagagagaggagcctcaggcatccccggacctaag
ggagacagaggtgacaacggagagaagggacctgagggtgcttctggcaaagacggttca
agaggtttgactggtccaattggtcctcctggcccagctggtcccaatggagagaagggt
gaatctggtccctctggaccttccggtgctgctggtgcccgaggtgctcctggtgacagg
ggtgagactggacctcctgggcctgctggcttcgctgggcctcctggatctgatggtcag
cccggagtcaagggagagcaaggagagggtggacagaagggagatgctggtgcccctgga
ccacagggaccctccggagctcctggaccttccggacctactggcgtttctggacctaaa
ggtgctcgcggtgctcagggaccctctggagccactggtttccctggagctgccggcaga
gtcgggccccctggtcccaatggtaaccctggtgctgctgggccctctggccctgctggt
aaagatggccctaaaggtgtgcgtggagacggtggacccccaggcagacagggagatgct
gggctgcgtggagctgctggctcccctggagagaagggagatgctggagaggatggtccc
tctggtcccgatggtccttcaggcccttcaggtctggctggacagcgtggcattgttggt
cttccaggacaacgtggagagagaggtttccctggcctgccaggaccctctggtgagcct
ggtaaacaaggatctcctggtggaagcggagaccgtgggccccctggccctgtggggccc
cctggactgactggacccgcaggagagcccggtagagagggcaacgctggttctgatgga
ccccctggtagagatggagccactggaatcaagggtgaccgtggtaacaccggtcctgct
ggtgctcctggctccccaggtgctaatggttcccccggccctgtcggccccaccggcaag
cagggagacaggggagaggctggagctcaaggaccagctggacctgccgggcctgctgga
gccagaggaatggctggaccccaaggaccccgtggagacaagggtgaggctggagagggt
ggtgagagaggacagaaaggacacagaggattcactggtctgcagggtctgcctggacct
cctggtcaagctggagaccagggtgcatctggacctgccggaccaagtggatcaagagga
cctcccggacctattggtccacatggaaaggatggttccaacggtatgcccggccccatc
ggaccccccggaccccgtggtcgctctggagagactggtccctctggtccccctggaaac
tccggtccccctggtcctcctggtcctcccggccctggtatcgacatgtctgccttcgct
ggcctgtctcagcctgagaaatcccccgatcccctgaggtacatgagggccgaccaggcc
tccggaaacctgaggacgcacgacgccgaggtggacgccacgctcaagtctctcaacaac
cagattgagaacatccgctcccccgagggctccaagaagaaccctgcacgtacttgcaga
gacctgaagctgtgccacccagactggaagagcggagagtactggatcgaccctaaccag
ggctgcaccatagacgctatcaaggtctactgtaacatggagaccggagagtcctgcgtc
taccccaagcccgccagcatccccaagaagaactggtggtccagcaagagcaaggctgcc
aaacacgtctggttcggagagaccatgaacggaggattccacttcagctatggcgatgac
agcctggctgccaacacggccagcatccagatgaccttcctgcggctgctttccaccgag
gctagccagaacctcacctaccactgcaagaacagtgtggcttacatggacggagccacg
ggcaacctgaagaaggccgtgctcctccagggctccaacgatgtggagatcagggccgag
ggaaacagccgcttcacctacaccgttatgcaggacggctgcacgaaacacacaggagca
tggggcaagacagtgattgactacagatctcagaagaccagccggctgcccatcgtggac
attgctcccatggatattggaggagcggaccaagagtttggagtcgacgtcggtgcagtc
tgcttcttgtaa
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