Oncorhynchus tshawytscha (Chinook salmon): 112240218
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Entry
112240218 CDS
T05605
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04140
Autophagy - animal
otw04148
Efferocytosis
otw05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112240218
04148 Efferocytosis
112240218
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112240218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112240218
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
112240218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_2
Vps39_1
CNH
Clathrin
WD40_like
zf-FCS
Motif
Other DBs
NCBI-GeneID:
112240218
NCBI-ProteinID:
XP_042186305
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Position
LG11:complement(54318843..54367629)
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AA seq
876 aa
AA seq
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MHDAYEPVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLFIVSQYKILISLLENNIHVHDLLTFQQITVVSKAKGATLFACDLQLSPSGE
AQLRMCVAVKKKLQLYYWKDREFYELQGDFSAPDIPKSMAWCENSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVVPLADGKVAVGQDDLTVVLNEDGVCTQKCALNWTDIPIDME
HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGPNIVYVASNHFVWRLVPVSI
ASQIRQLLQDKQFELALQLANMKDDVEGDKRQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPADYRKQLHYPNPLPSLSGAELEKAHLALIDYLTQKRSHLVKQL
NDSEPSTPSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLDNNHCHIEES
EYILKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGMENLG
IIFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLNFLKEGFKELAIPYLEHIVHVWE
ETEPEFHNVLIQLYLERVQGLMKQYLNSLPEGVPAVAAGKEEGDLGEFRSKLVCFLEVST
SYEPGRLISDFPFDGLLEERALLLGRMGKHEQALYIYVHVLKDTHMAKEYCHRHYDKDTD
RNKDVYLSLLRMYLSPPDVHCLGPIKMELSEPQANLKAALHVLELHHSKLNTAKAIDLLP
ANTQIREIRVFLESVLEEKAQRKRFDQVLKSLLQAEFLRVQEERIFHQQVKCTISEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRGVCPIEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcttacgaaccggtacctatcctggagaaactgcctctccagattgactgt
cttgcggcctgggaggactggcttctagttgggaccaaaccaggccatctgctgctctac
agaatcaaaaaggatgcaggtaccaacaggtttgaggtgactctggagaaatccaacaag
aacttctccaagaagatccagcagctcttcattgtctcacagtacaagatcctcatcagt
cttctagagaacaacatccatgtccacgacctattgacctttcagcagattactgtggtc
tccaaggccaaaggggcaacgctcttcgcctgtgacctgcagctgtccccttcaggagag
gcccagctgaggatgtgtgttgcagtgaagaagaagcttcagctgtactactggaaggac
agggagttctacgagctacagggggacttttctgctccagacatcccgaagtccatggcc
tggtgtgagaactccatctgtgtaggcttcaagagagactactacctcatccggatggat
gggcggggctccatcaaggagctcttccccacggggaagcagctggagcccctggttgtt
cccctggctgatgggaaggtggcggtgggccaggatgacctcacggtggtgctcaacgag
gacggggtctgcactcagaagtgtgccctcaactggaccgacatccccattgatatggaa
catcagcccccctacatcatagctgtcctgcctcgctatgtggagatcaggacctttgaa
cccagactgctggtccagagtgtggagctgcagagaccacgattcatcacctcagctggg
cctaatatagtgtacgttgccagcaaccattttgtctggcgcctggtgcctgtgtccatc
gccagtcagatcagacagttactacaggacaagcagtttgaactggccctgcaactggca
aatatgaaggatgatgtggaaggagataagagacagcagattcaccacatccagaatctc
tatgccttcaatctgttctgtcagaagaggttcgatgactccatgcaggtgttcgctaag
ctcggcacagatcccacccatgtgattggtctgtatccagatctgctccccgctgactac
cgtaaacagctgcactaccccaaccccctgcccagtctgtctggagcagaactggagaag
gctcacctggcgctcatagactacctgacacagaaacgcagccacctggtgaagcagctg
aacgactccgagccgtccaccccgtctcccctcatggaagggactcccaccatcaagagc
aggaagaaactccttcagatcatcgacaccacgctgctcaaatgctacctgcataccaac
gtggccctggtgtcccctctgttgcgtctggataataaccactgtcacattgaggagagt
gagtacatcctgaagaaggcccacaagtacagcgagctcatcatcctctatgagaagaag
ggcctgcatcagaaagccctacaggtgttgttggaccagtccaccaaggctaactctccc
ctaaaggggcatgagaggactgtgcaatacctccagagactggggatggagaatctaggc
atcatctttgagttctctccctgggtgttgaagatctgtcccgaagacggactgaagatc
ttcactgaggacctgacggaggtagagaccctgcccagagacaaggtcctgaacttcctg
aaggagggctttaaggagctggctatcccctacctggagcacatcgtacacgtctgggag
gagacggagccagagttccataacgtcctcattcagctgtacctggagagggtccaggga
ctcatgaagcagtacctcaactccctgcccgagggggttcctgcagtggctgctgggaag
gaggagggggacctgggagagttccggagcaagctagtgtgtttcctggaggtctctacc
agctacgaaccaggccgacttatctctgacttccccttcgatggtcttctggaggagcgg
gccctgttgctgggtcggatggggaaacacgaacaggccctctacatctacgtacacgtc
ctgaaggacacacacatggccaaggagtactgtcaccggcattatgacaaagacacagac
agaaacaaagatgtgtacctgtctctgctgcgcatgtatttgtcccctcctgatgtccac
tgccttggaccaatcaaaatggagctgtcggagccacaggccaatctaaaggcagctcta
catgtcttggagctgcaccacagcaagctgaataccgctaaggccatcgacctgctgcca
gccaacactcagatcagagagatccgtgtgttcctggagagtgttctggaggagaaggct
cagaggaaacgctttgaccaggtgctcaagagtcttctgcaggccgagttcctacgggtc
caggaggagcgcatcttccaccagcaggtcaagtgtaccatctcagaagagaagacctgc
cgggtctgtaagaagaagataggcaacagcgccttcgccaggtatcccaacggtgttgtc
gttcattacttctgctgtaaggaccgaggggtgtgtcctattgagcagtga
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