Oncorhynchus tshawytscha (Chinook salmon): 112240409
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Entry
112240409 CDS
T05605
Symbol
ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X2
KO
K16474
intraflagellar transport protein 88
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
otw03037
]
112240409 (ift88)
Cilium and associated proteins [BR:
otw03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
112240409 (ift88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_8
TPR_14
TPR_6
TPR_19
TPR_16
TPR_7
TPR_11
ANAPC3
ARM_TT21_5th
SNAP
TPR_9
TPR_CcmH_CycH
TPR_10
TPR_17
TPR-S
MIT
ARM_TT21_4th
TPR_15
ARM_TT21_N
RPN7
HAT_PRP39_C
Coatomer_E
ARM_TT21_2nd
ARM_TT21
SHPRH_helical-1st
DUF6584
ARM_TT21_C
SPO22
RNPP_C
Motif
Other DBs
NCBI-GeneID:
112240409
NCBI-ProteinID:
XP_024264477
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All DBs
Position
LG03:60465559..60487448
Genome browser
AA seq
876 aa
AA seq
DB search
MEHVHLAAEEDDLYSGYNDYNPTFDSEELDNDAGFQQAVRTSHGRRPPMTAKFPGTAIGG
RALGTSFGSRMPMASSMGRPMTGAVQDGAARPMTAVRAAGYSSAMTRGSTFDPLGQSKGP
APPLEGKSEDTPDEKVKILEKKVNDLIEESCLAHGHGDLQLSLDRAKEAGRKERALVRQR
EQSGNADHINLDLTYSVLFNLATQYANNDMYAEALNTYQVIVKNKMFSNAGRLKVNMANI
HFKQKNYPKAIKLYRMALDQISNSHKEMRIKIMQNIGVVFIRMGQYSDAITSFEHIMSEC
PNIKTGFNLILCYYAIGDRERMKKAFQKLICVPLGIDEEDKYIPPNDDTHANLVIEAIKN
DKLHQMERERKALAEKFIMTSAKLIAPAIEATFAAGFDWCVDMVKSSQYVELANDLEINK
AITYLRQRDFNQLEAVETLKTFEKKDSRVKSAAATNLSFLYFLEKDYDQADRYADLAMTA
DRYNPAALINKGNTVFVKKDYEKAAEFYKEALRNDSSCTEALYNLGLTYKRLGRLEESLD
CFLKLHAILRNSAQVMWQLANLFEMLEDPHQAIEWLMQLITVTPTDPQVLAKLGELYDSE
GDKSQAFQYYQESFRYFPSNIDVIEWLGAYYIDTQFCEKAIQYFERATLIQPTQVKWQLM
VASCYRRSGNYQKALETYKDIHRKFPENVECLRFLVRLCTDMGMKEVQDYATKLKKVEKM
KEIREQRVKSAREGSARGTRREGSASSAGTPNLVRTPPKAIVCTPDPVRHPPKKDSEVDI
KAVSHPEPKHSPLLAQGRDSGHSSHGTSAKGERLSAKMRALPGSNEPYEASSQRDIDASY
VDPLGAPMERPKTAAKKRNEEDEFADEELGDDLLPE
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggaacatgtacatcttgctgctgaggaagatgacctgtactctggctacaacgactac
aatccaacatttgattcagaggagcttgacaatgatgctggttttcagcaagcagtcagg
acaagccatgggagaaggccccccatgactgccaagtttcctggcactgccattggagga
cgggctttggggacctcttttggatctaggatgcccatggcctcatcaatgggcagaccc
atgactggagctgtacaggatggagcagctaggcctatgactgcagtcagagcagcaggc
tactcttcagccatgaccagagggtctacatttgacccactgggtcagtccaaaggaccg
gctcctccattggagggcaaaagtgaagatacgccggatgagaaggtgaagatcctggag
aagaaggtgaacgacctgatagaagagagctgcctggcacatggccatggagacctacag
ttgtcccttgatagagccaaagaggcagggcggaaggagagagcgctggtgagacagagg
gagcagtcaggcaatgcagaccacatcaacctggacctcacatactctgtcttgtttaac
ttggcaactcagtacgccaacaatgacatgtacgcggaggctctgaacacttaccaggtc
atcgtaaagaacaagatgttcagtaatgcaggaaggttaaaagtgaacatggccaacatc
cacttcaagcagaaaaactaccccaaggccatcaagttgtaccgcatggccctggaccag
atctccaactcccacaaggagatgaggatcaagatcatgcagaacatcggtgtggtcttc
atccgcatgggccagtactctgacgccatcacctcctttgaacacatcatgagcgagtgc
cccaatattaagacaggctttaacctgatcctgtgttactacgccatcggagaccgagag
aggatgaagaaggcctttcagaagctcatctgtgttcctctggggatcgacgaggaggac
aagtacatcccacccaacgatgacacccatgccaacctggttattgaagccatcaagaac
gacaaacttcaccagatggagagagaacgtaaagccctggctgagaaattcatcatgaca
tcagccaaactcatcgccccagccatcgaggcgacgttcgccgccggatttgactggtgt
gtggacatggtgaagagttcccagtatgtagaactggccaacgacctagaaatcaacaaa
gccatcacctacctgagacagagggacttcaaccagctcgaggctgtggagactctgaag
acgtttgagaagaaagacagcagagtgaagagtgctgcagccactaacctctccttcctc
tacttcctggagaaagactatgaccaggctgaccgctatgccgacctggccatgacagcc
gaccgctacaacccagcggcgctcatcaacaagggcaacacagtgtttgtgaagaaggac
tatgagaaggctgcagagttctacaaggaggctctccggaacgactcgtcctgcactgag
gccctatataacttaggtcttacctataagcgtctggggcgtctggaggagtctctggac
tgtttcctgaagctccacgccatcctgaggaacagcgcccaggtcatgtggcagctagcc
aacctctttgagatgttggaggatcctcaccaggccatagagtggttgatgcaactgatc
actgtgacgcccacagacccccaggtgttggccaaactgggagagctctacgacagtgag
ggagacaagtctcaggcgttccagtactaccaagagtccttcagatatttcccctccaac
attgacgttattgagtggctgggggcctactacattgacactcagttctgtgagaaggcc
atccagtactttgagagagccacactaatccagccaactcaggtgaaatggcagcttatg
gtggccagctgctacagaagaagtggaaactaccagaaagccctggagacttacaaagac
atccatcggaaattcccggaaaacgttgaatgcctgcgtttcctggtgaggctatgcaca
gacatggggatgaaagaggtccaggactacgccaccaaactgaagaaggtggagaagatg
aaagagatcagagaacagcgggtgaagtcggcgagggagggcagtgctcgaggcacccgg
agagagggcagcgccagcagtgcgggcaccccaaaccttgtccgcaccccgcctaaggcc
atcgtctgcactccagaccctgttcgccacccgccaaagaaggacagcgaggtggatatc
aaagcagtctctcaccctgagcctaaacacagtcctctgctggcccaggggagagacagt
ggacacagcagccatggcaccagcgccaagggggagaggctgagcgccaagatgagggca
ctgcctggctccaacgaaccctacgaggccagcagccagcgagacatagatgcctcctac
gtggatccactgggggctccgatggagagaccaaagactgcagctaagaagcgcaatgaa
gaggacgagtttgctgatgaagagctgggagatgacctactaccggagtag
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integrated database retrieval system
