Oncorhynchus tshawytscha (Chinook salmon): 112240506
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Entry
112240506 CDS
T05605
Name
(RefSeq) liprin-alpha-4-like
KO
K26226
liprin-alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
112240506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112240506
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112240506
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LIP-1
SAM_1
SAM_2
Motif
Other DBs
NCBI-GeneID:
112240506
NCBI-ProteinID:
XP_042161073
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All DBs
Position
LG02:29603890..29869985
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AA seq
1100 aa
AA seq
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MMCEVMPTITEGDSGGPPRGGGTQNGSDPEANFEQLMVNMLDERDKLLESLRETQETLIQ
SQSKLQGALHERDVLQRQINTALPQEFATLTKELNVCREQLLEKEEEISELKAERNNTRL
LLEHLECLVSRHERSLRMTVVKRQAPPPSGVSSEVEVLKALKSLFEHHKALDEKSNVMQL
WISSFILCMSGLNPEHACLLLTNVRQRKEGDSLDRNDTSKPTWKRLPNGSIDAHDDGSRS
VELQDLLDRTNQELDQSRECSGTLSTRVAELEAELANTRRDLSRSEELSIKQQREQREGL
AQREDMEERITTLEKRYLAAQRETTHIHDLNDKLENELVTKDSLYRQSEEKVRQLQELLE
LAEQRLAQTMRKAETLPEVEAELAQRVAALTKAEERQGNVEERLRQLESQLEEKNQELGR
ARQREKMNEEHNKRLSDTVDRLLTESNERLQLHLKERMAALEDKNSLIQDLKNSQKQLEE
FHHTRERLIGEIEKLRNEIDHLKRRSGVFGDGAHPRSQMGSASDLRFSGVEGQDGHYSSA
VLLPVVCAVCEQDYSSLRGSVSHLLGGDMEAKSDLDDDVSSALLSPNGQSDAQTLALMLQ
EQLDAINEEIRMIQVERESADLRADEIESRVNSGSMDGLNVTLRPRTMPTSATAQSLASS
SSPPTSGCSTPKHHAHSASHQLGIMTLSPVETREDKATINLRLDTNFAQLTGSLEDGRGG
KAKKGIKSSIGRLFGKSKEKGRMEGGGTLGREGQPLPALMLGVDFELSIGDTMTLGKLGT
QAERDRRMKKKHELLEEARRRGLPFPQWDGPTVVSWLELWLGMPAWYVAACRANVKSGAI
MSALSDTEIQREIGISNPLHRLKLRLAIQEMVSLTSPSAPLTSRTVLIPTLPLTSPSAPL
TSRTSSGNVWLTHEEMENLASSTKATLAYGDMNHEWIGNEWLPSLGLPQYRSYFMECLVD
ARMLDHLTKKDLRTHLKMVDSFHRSVTMTFDYSSLALILQIPMQNTQARQVLEREFNNVL
ALGTDRRLEESGDDKTFRRSPSWRKRFRAREGGEGMGMMAGSMETLPAGFRMPSMPLVPR
KQLQPEGIELWMRYRCLATH
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgatgtgcgaggtgatgccgacaatcaccgagggggactcggggggacctccccggggt
ggagggactcagaacggctcagaccccgaagccaacttcgagcagctgatggtcaacatg
cttgacgagagagacaagctgctggagtccctgcgcgagacccaagagacactcattcaa
tcacagagcaagctgcagggtgcactgcacgagagggacgtgcttcagcgtcagatcaac
actgcgctgcctcaggagtttgccactctgaccaaggagctgaacgtgtgtcgggaacag
ctgctggagaaagaagaggagatatctgaactgaaggctgagaggaacaacaccaggctt
ctcttggagcacctggagtgtctggtgtctcgtcacgagcgcagtctgaggatgacggtg
gtgaagaggcaggctcctcccccctctggggtctccagcgaggtggaggtcctcaaggcc
ctcaagtccctgtttgaacaccacaaagccctggatgagaagagcaatgtcatgcagctt
tggatctcctccttcattctgtgtatgtctgggctaaatccagaacatgcctgcctactg
ctgaccaatgtgaggcagaggaaggagggagactctttggacaggaacgacacttccaaa
cccacctggaagaggctacctaacggttccatagatgcccatgatgacggcagccggtcg
gtggagctgcaggaccttcttgaccggaccaatcaggagctggatcagagccgtgagtgt
tcgggcacgctcagtacacgcgtggcagagctggaggcggagctagccaacactcgccga
gatctgagtcgcagcgaagagctgtcaatcaaacaacagagggaacagagagaggggctg
gcgcagagggaagatatggaggagcggattacaacgttagagaaacgttacctggccgct
cagagggaaaccacccacatccacgacctcaacgacaaactggagaacgaactggttacc
aaggactctctgtaccgacagagtgaggagaaggtgcgccagctgcaggagttgttagag
ttggcagagcagaggctggctcagaccatgaggaaggctgagacactaccagaggtggag
gcagagttggcacagagggtggcagccctcaccaaggcggaggagcgtcaaggcaacgtg
gaagagagactcagacagctggagtcacaacttgaggagaagaaccaggaactgggcagg
gcgcgtcagagagagaagatgaatgaagaacataacaagcgtttgtctgacacggtggat
cgtctgctcacggagtctaacgagagactgcagcttcaccttaaagaacgcatggcagca
ctggaggacaagaactccctgatccaggatctgaagaactcccagaaacagctggaggag
tttcaccacaccagggagcgtctgattggtgagattgagaagctgcggaacgagatcgac
cacctgaaacgccggagcggagtgtttggagatggagcacacccacggtctcaaatgggc
agtgccagtgacctgcgtttctcaggggtagaagggcaggatggacactacagctctgct
gttctcctccctgttgtgtgtgcggtgtgtgagcaggactactcgtctctacggggcagc
gtcagtcacctcctgggcggtgacatggaagcaaagtcagacctagatgatgatgttagc
tccgccctcctgtcacccaacggccaatcagatgcacagaccctggctctgatgctgcag
gagcagctggatgccatcaatgaggagatcaggatgatccaggtggagagggagtcagct
gacctcagggcagatgagatagagtctcgtgtgaacagcggtagcatggacggactcaat
gttacactccgcccccgaaccatgccaacctcagctacagcccaatcgctggcctcctcc
tcatccccgcccaccagtggatgctctactcccaaacaccacgcccacagtgccagccac
cagctgggcatcatgaccctgtctccagtggagacccgtgaggacaaggctactattaat
ctgagactggacaccaacttcgcccaactcactggcagtctggaggacggacgagggggt
aaagcgaagaagggcatcaagtcgtctataggtcgtctgtttgggaagagcaaggagaag
ggcaggatggagggaggagggaccctggggagggagggacagcctttacctgccctgatg
ctaggagtagactttgagctgagcatcggagacaccatgactctgggcaagctgggcaca
caggcagagagagaccgcaggatgaagaagaaacatgagctgctagaggaggccaggagg
agaggactgcccttcccccagtgggatggacccactgtggtctcctggctagagctgtgg
ctggggatgcccgcctggtacgtggcagcgtgtcgtgccaacgtgaagagcggtgccatc
atgtctgccctgtctgacacagagatccagagggagattggcatcagtaaccccctgcac
cgcctcaaattgagactggccatccaggagatggtctccctcaccagcccctctgccccg
ctcacctctagaacggtactcatacccacactgcccctcaccagcccctctgccccgctc
acctctagaacgtcctccggaaatgtgtggttgactcatgaagagatggagaacctggct
tcctccactaaagcgacgctggcgtacggggatatgaaccatgagtggattggtaatgag
tggctgcccagcctgggtctgcctcagtaccgctcctacttcatggagtgtctggtggac
gcccgcatgctggaccacctgaccaagaaagacctccgcacacacctcaagatggtcgac
agcttccacaggtcagtcaccatgaccttcgactacagcagcctggctctcattcttcag
atccccatgcagaacacacaggcccggcaggttctagagagagagttcaacaatgtcctg
gccctgggcaccgatcgcagactggaggagagtggggatgataagacgttccgccgctct
ccatcatggcgtaagcgtttcagggcgcgggagggaggggaagggatgggtatgatggcg
ggctccatggaaaccctgcccgctgggttccgtatgccctccatgcccctggtgcccagg
aaacagctgcaaccagaaggaattgaattgtggatgcgatacaggtgtttggcgactcac
tga
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