Oncorhynchus tshawytscha (Chinook salmon): 112240545
Help
Entry
112240545 CDS
T05605
Name
(RefSeq) alpha-actinin-1 isoform X1
KO
K05699
actinin alpha 1/4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04520
Adherens junction
otw04530
Tight junction
otw04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112240545
04520 Adherens junction
112240545
04530 Tight junction
112240545
09142 Cell motility
04810 Regulation of actin cytoskeleton
112240545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112240545
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112240545
04147 Exosome [BR:
otw04147
]
112240545
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112240545
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
112240545
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112240545
Exosomal proteins of colorectal cancer cells
112240545
Exosomal proteins of bladder cancer cells
112240545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
EFhand_Ca_insen
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_8
EF-hand_5
XisI
Uds1
Motif
Other DBs
NCBI-GeneID:
112240545
NCBI-ProteinID:
XP_042186250
LinkDB
All DBs
Position
LG11:51956467..52067648
Genome browser
AA seq
896 aa
AA seq
DB search
MPTFDMDPYDGDENDYMPQEDDWDRDMLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIE
EDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALHYITSKGVKLVSIGAEEIV
DGNAKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDG
LGFCALIHRHRPELIDYGKLRKDDPMTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEK
AIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPW
LENRAPENTMLAMQQKLEDFRDYRRQHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPS
EGKMVSDVSNAWGGLEGAEKGYEEWLLNEIRRLERLDHLAEKFRQKAATHEAWTEGKEEM
LQARDFETASLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNSRC
QRICDRWDALGALTQKRSEALQRTEKLLETIDQLYLEFAKRAAPFNNWMEGAMEDLQDTF
IVHTIEEIQGLSTAHEQFKATLPDADKERGAILGIHNEIAKIVATYHVNMAGTNPYTTIN
PQDINAKWDKVRQLVPQRDQALIEEHARQQNNERLRRQFANQANVIGPWIQTKMEEIGRI
SIEMHGTLEDQLTHLRQYEKNIVNYKPKIDQLEGDHQLIQEALIFDNKHTNYTMEHIRVG
WEQLLTTIARTINEIENQILTRDAKGISQDQMNEFRASFNHFDRDHSGTLGAEEFKACLI
SLGFDIANDAQGEAEFSRIMSIVDPNRVGVVTFQAFIDFMSRETADTDTADQVMASFKVL
AGDKNFIMADELRRELPPDQAEYCIARMAPYSGTDAVPGALDYMSFSTALYGESDL
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgcctactttcgacatggacccgtatgacggagatgaaaacgattatatgcctcaggaa
gatgactgggaccgggatatgctgttggacccggcgtgggagaagcagcagagaaagaca
ttcacggcctggtgcaactcccacctgaggaaagcaggaacgcagatcgagaacatcgag
gaggacttcagggacggactgaaactcatgctgctgttggaggtcatatcaggagagcgc
ttggccaaaccagagagggggaagatgagagttcacaagatctccaacgtcaacaaagct
ctccactacatcaccagtaaaggagtcaagctggtgtccatcggagctgaagagatcgtc
gacggcaacgctaaaatgaccctgggaatgatctggaccataatccttcgcttcgccatc
caggacatctctgtggaagaaacatcagctaaagagggtcttcttctgtggtgccagaga
aagactgctccttacaagaacgtcaacattcagaactttcacattagctggaaagatggg
ttgggattctgtgctctcattcacagacaccgcccagagctcattgactatggcaagcta
cgcaaggatgaccccatgaccaacctgaacacagcctttgacgtggcagagaagtacctg
gacattcccaagatgttggacgctgaggatatcgtgggcacggcccgcccggatgagaag
gccatcatgacctacgtatctagcttctaccacgccttctctggtgctcaaaaggcggag
acggcggccaataggatctgcaaggtgttggctgtcaaccaggagaatgagcagctgatg
gaggactacgagaagctggctagtgacctcttggagtggatccgtcgcaccatcccgtgg
ctggagaaccgtgccccagagaacaccatgctggctatgcagcagaagctggaggacttc
agggactatcgacgtcaacacaaacccccaaaggtccaggagaagtgccagctggagatc
aacttcaacaccctgcagaccaagctgaggctgagcaacaggcctgccttcatgccctcc
gaggggaagatggtgtcggacgtctctaacgcgtggggcggcctggagggggcggagaag
ggttatgaggagtggctccttaacgagatacgtcggctggagagactcgaccacctggct
gagaagtttcgtcagaaagcagccacccacgaagcctggactgaaggtaaggaggagatg
ctgcaggcgcgggactttgagacggcctctctgtctgagatcaaggctctgctgaagaaa
cacgaggccttcgagagcgacctggccgcgcaccaggaccgcgtagagcagatagctgcc
atcgctcaggagttaaatgagctagactactatgactcccccagtgtgaacagtcgatgc
cagaggatatgtgaccgatgggatgccctaggagccctgacccagaaacgcagcgaagct
ctgcagagaactgagaagcttctggagaccatagaccagttgtatctggagtttgccaag
cgagctgctccgttcaacaactggatggagggagccatggaggacctgcaggacaccttc
atagttcacaccatagaggagatacagggtctcagtacagcccatgagcagtttaaagcc
actctccctgatgcggataaggaacgcggtgccatcctgggcattcacaatgagatcgcc
aagatagtggccacctatcatgtaaacatggctggtaccaacccttacaccaccatcaac
cctcaggacatcaacgccaagtgggacaaggtgagacagctggttccccagagggaccag
gctctgatcgaagagcacgcccggcagcagaacaacgagcgtctccgcaggcagttcgcc
aaccaagccaacgtcatcgggccctggatccagaccaagatggaggagattggtcgtatc
tccatcgaaatgcacggaaccctggaggatcagctgacccacctccgccaatacgagaag
aacattgtcaactacaagccaaagatcgaccaattggagggagaccaccaactgattcag
gaagctctcatcttcgacaacaagcacaccaactacaccatggagcatatccgtgtgggc
tgggagcagctcctgaccaccatcgccagaaccatcaacgagatcgagaaccagattctg
acgagggacgccaagggcatcagccaggaccagatgaacgagttcagagcctccttcaac
cacttcgacagggatcactcaggcactctgggggctgaggagttcaaggcctgcctgatc
agtctgggcttcgatatcgccaacgatgcacagggtgaagcagagttctctcgcatcatg
agcatcgtggatcctaaccgggtgggcgtggtcacgttccaggcctttattgatttcatg
tcccgagagacggccgatactgacaccgctgaccaggtcatggcctccttcaaggtcctg
gctggggacaagaacttcatcatggctgatgagcttcgtcgtgagttgcctcctgatcag
gcagagtactgcatcgcccgcatggcgccctactccggcaccgacgccgtccccggcgcc
ctggactacatgtccttctccaccgcactctacggagagagtgacctctga
DBGET
integrated database retrieval system
