Oncorhynchus tshawytscha (Chinook salmon): 112240642
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Entry
112240642 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112240642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112240642
03019 Messenger RNA biogenesis [BR:
otw03019
]
112240642
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112240642
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112240642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
Torus
zf_CCCH_4
zf-CCHC
zf-CCCH_3
zf-CCCH_2
zf-CCCH_4
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
112240642
NCBI-ProteinID:
XP_042171579
LinkDB
All DBs
Position
Unknown
AA seq
283 aa
AA seq
DB search
MQDLIATVDHIKFDLEIAVEQQXGAQPLPFPGMDKSGAAVCEFFMRAACLKGTAQVGVSG
MSVLSSSVGKTVVCKHWLRGLCKKGDQCEFLQLYDMTKMPECYFCTRLGECSNKECPFLH
IDPESKIKDCPWYDRGFCKHGPDCRHRHTRRVICMNYLVGFCPEGRSCKFMHPRFELPMG
ATEQPPLPAQILGHQKTLPSLGRSSLSLIQLTNPGGGAGPHQHQHHQRQPYSSGPSMHQH
HNNMGGGNRGPRPLDQVTCYKCGEKGHYANKCTKGHLAFLSGQ
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacctgatagccaccgtggaccacatcaagtttgatctagagatagctgtggag
cagcagnctggggctcagcctctccctttccccgggatggacaagtctggggctgctgtg
tgtgagttcttcatgagagctgcctgtctcaaaggaactgcccaggtgggtgtgtccggg
atgtccgttctgtcatcatcagtggggaagacggtggtgtgtaaacactggctcagagga
ctctgtaagaagggagaccagtgtgagttcctacaactgtacgacatgaccaagatgccc
gagtgttacttctgtactcgtctaggagagtgcagtaacaaggagtgtccgttcctccac
atcgacccagagtctaagatcaaagactgtccctggtatgacagaggcttctgcaaacat
ggtccagactgtagacatcgccacaccagaagagtaatctgtatgaactacttggttggt
ttctgtccagagggccggtcctgtaaattcatgcacccgcggtttgagctgccgatggga
gccacagaacagcctcctctaccagcacagatactgggtcaccagaagacgttgccttcg
cttggccgctcgtccctgtcactcatccagctgaccaatcctgggggaggtgcaggtcct
caccagcatcaacaccatcaacgccagccgtactcctctggtcccagcatgcatcagcac
cacaacaacatgggaggagggaacaggggtccacgcccactagaccaggtcacctgctac
aagtgtggtgagaagggccactatgccaataaatgtaccaaaggacacctggccttcctc
agtggacagtaa
DBGET
integrated database retrieval system
