Oncorhynchus tshawytscha (Chinook salmon): 112241077
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Entry
112241077 CDS
T05605
Symbol
chd1l
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1-like isoform X1
KO
K20092
chromodomain-helicase-DNA-binding protein 1-like [EC:5.6.2.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112241077 (chd1l)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
112241077 (chd1l)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
DEAD
LIG3_BRCT
SWI2_SNF2
AAA_22
SLFN-g3_helicase
ERCC3_RAD25_C
Selenoprotein_S
Motif
Other DBs
NCBI-GeneID:
112241077
NCBI-ProteinID:
XP_042178611
UniProt:
A0AAZ3QR44
LinkDB
All DBs
Position
LG05:90133939..90192487
Genome browser
AA seq
1044 aa
AA seq
DB search
MASFHQKIKTSVPEETKSSLTEKDLQKWGLQGIQLRAYQLDGVQWLTQCLANQQGCILGD
EMGLGKTCQTISLLLYMRGALRQDGPFLVLSPLSVMDNWRSEMECLSPCLKVLCYYGDKD
KRAELQRDMNNTHYHVLLTTYELCIKDASFLKRRKWKVLVVDEAHRLKNHNSLLHKILME
FSLDFRVLLTGTPIQNNLTELYSLLSFIQPSLFPTDQTEDFTSTYNQVQTQPTLASDLQR
VLQPFLLRRVKAEVAADLPMKTEILMYHGLSALQKRYYKAILMKDPYAFGNEQGNKTRLL
NILMQLRKCVDHPYLFDGVEPEPFEMGEHLIQASGKLCLLDSMLAYLHQGGHHILLFSQM
TRMLDILQDYMEYRGYRYERLDGSVRGEERNLAIKNFSSKDVFVFLLSTKAGGVGMNLTA
ADTVIFIDSDFNPQNDLQAAARCHRIGQTRAVKVIRLLGRDTVEEIVYSRASSKLSLTNT
VIEEGRFSLLNHNHSAAAGLQLSEILKFGVDKLLSSEESSIQAVNMGLILGQSRDGEWLT
DEAPTQTKDLPTEEEEEGESEGQNHMYYFEGRDYSREVSSEDQRTFSRLLEEEAGGGERR
ATRHNDEVCLSGPLLAPMRKRKALTETDLKEREEAAAKRARVQEDKRRRLQENKHRKKMA
WWESSGYRSLCLPSVESEEEEEADDLSVTSTDSEHSAISYVLGDVTHPYANQEDAIIVHC
VDDSGRWGRGGLFTALENRSDAPCKQYELAGKMKDLELGSVLLFPVDDKQSRLDGQDQVA
LIVAQQRARDNSLSGIHLSALEEGLQKIYRVAKTNKASVHLPRIGHSTRGFNWYGTERLI
RKHLASRGVHTSIYYYSRSVSTSALGTSTTPSTASASTSKASASSSKISAASPSPSSVSP
SPTSVSVSPSPPHSPPVPHYPGPDSDRESEERETANQSSRTPSPSGPALPDFMRGVHVFF
YNLTASDRKRLARYLITYEGDEEEIMSSEVTHIVTELESPVQSQELQELIGQHPHALPVQ
KTWLEACFSRQRQVNTTKFLHCFK
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggccagcttccatcagaaaataaaaacaagcgtaccggaagaaaccaagagcagtctg
actgaaaaagatttgcaaaagtggggtttgcaagggattcagttgcgagcctatcagctg
gacggagtgcagtggctcacccagtgcctggccaaccagcagggatgtatcctaggagat
gagatgggcctgggcaagacctgccagaccatctctctgctattgtacatgagaggggcc
ctgcggcaggatgggccgttcctggtcctcagcccactgtctgtcatggacaactggagg
agcgagatggaatgcttatccccctgtctcaaggtgctgtgttactatggagacaaagac
aagagagcagaactacagagggacatgaacaacacacactaccatgttctactaactaca
tatgagctctgtatcaaagatgcctcattcctgaaaaggaggaagtggaaagtcttggta
gttgatgaggctcacagactgaagaaccataactccctgttgcacaaaatcctgatggag
ttctctctggatttcagagtgctgctgacaggaactcctatccagaacaacctgacggag
ctctacagcctcctatcgttcatccagcccagtctcttccccacagaccagaccgaggac
ttcactagcacttacaaccaggtccagacacaaccgactctggccagtgatctccagaga
gtgctgcagcccttcctgctgaggagggtgaaggctgaggtagcagctgacctccccatg
aagacagagatactgatgtaccacggcctgtctgccctgcagaagagatattataaggct
atactcatgaaggacccgtatgcctttgggaatgagcagggaaacaagaccagactgctt
aatatactgatgcagctccggaagtgtgtggaccacccctacctgtttgatggtgtggaa
ccagagccgtttgagatgggggagcatctgatccaggctagtggaaaactctgtctgctg
gacagcatgctggcatacctgcaccaagggggacatcacatcttgctgttctcccagatg
accaggatgctggacattctccaggactacatggaatacagaggttacagatatgagcgt
ctggatggatcagtcaggggggaagagcgtaacctggccatcaagaacttcagcagcaaa
gacgtctttgtctttctactcagcactaaagcaggaggcgttgggatgaacctaacagca
gctgatactgtgatcttcattgactctgacttcaacccccagaatgacctgcaggctgcc
gctcgctgccaccggattggtcagaccagggctgtgaaggtgatccggctcctggggagg
gatacggtagaggagattgtgtactcccgggcaagttctaagctcagccttaccaacaca
gtgatagaagaggggcgtttttctctgcttaaccacaaccactctgctgctgctggtctg
cagctcagcgagatcctgaagtttggagtggacaagctgttgtcgtcagaagagagctcc
atccaggctgtgaacatgggtctgatcctgggtcagtctagagacggggagtggctgact
gacgaagcccccacccagaccaaggacctgcccacagaggaggaagaggagggagaatct
gagggacagaaccacatgtactactttgaagggagggattactcccgggaggtgagctct
gaggaccagaggaccttcagtcgtctcctggaggaagaggcaggaggaggagagagacga
gcgacacgacacaacgatgaagtgtgtctgtccgggcccctgttggcccccatgaggaag
aggaaggccttgactgagactgacctgaaagagagggaggaggctgcagctaagagggcc
agagtacaggaggacaagaggaggagactacaggagaacaaacacaggaagaagatggca
tggtgggagtccagtgggtacaggtccctgtgtttaccctctgtggagagcgaggaggag
gaggaggctgatgacctcagtgtgacctctacagattcagaacactctgctattagttac
gtgttgggcgatgtcacacacccctacgccaaccaggaagatgccatcatagtgcactgt
gttgatgactctggccggtggggtagaggtggtctcttcacagcattggagaacaggtca
gatgcaccatgtaaacaatatgagctggctggaaagatgaaagacttggagctgggatct
gtgttgctgtttcctgttgatgataaacagtccagactggatggccaagaccaggtggcc
ctgatagtggcccagcagagagccagagacaacagcctgtcagggatccatctctctgct
ctggaagaaggactccagaaaatctacagggtcgccaagactaacaaggctagcgtccac
ctcccccgtatcggccactccaccagagggtttaactggtatggaacagagagactcatc
agaaaacacctggcctccagaggggtacacacctccatatactactacagcaggtctgtc
tctacctctgctttaggtacatccacaacaccctccacagcatcagcctcaacctccaag
gcctcagcctctagctccaagatctcagcagcatccccctccccatcctccgtctccccc
tccccaacctccgtctcagtctccccctctcctccacactcccccccagtgccacattat
cctggccctgactcagacagggagagtgaggaaagagagacagccaatcagagcagcagg
acccccagcccctctggacctgctctgcctgacttcatgagaggagttcatgtgttcttc
tacaacctgacagcctcagacaggaagagactggcccgctacctcatcacatatgaagga
gatgaggaggagatcatgagttcagaggtcacacacattgtaacagagctggagagtcct
gtccaatcacaggagctccaggagctgattggtcagcaccctcatgcacttcctgttcag
aagacctggctggaggcctgcttctctagacagagacaagtcaacaccaccaagttcctg
cactgctttaaatga
DBGET
integrated database retrieval system
