Oncorhynchus tshawytscha (Chinook salmon): 112241182
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Entry
112241182 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: huntingtin-like
KO
K04533
huntingtin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112241182
04131 Membrane trafficking [BR:
otw04131
]
112241182
03029 Mitochondrial biogenesis [BR:
otw03029
]
112241182
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
112241182
Membrane trafficking [BR:
otw04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
112241182
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
112241182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
Motif
Other DBs
NCBI-GeneID:
112241182
NCBI-ProteinID:
XP_042171006
LinkDB
All DBs
Position
Unknown
AA seq
3154 aa
AA seq
DB search
MATMDKLMKAFESLKSFQQQQQGPPTAEETAQKQKKELATTKKDRVAHCLTICENIIAQS
LRTSPEFQKLLGIAMEMFLLCSDDRESDVRMVADECLNKIIKALMDSNLPRLQLELYKEI
KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRITKRQEETVQETLSAAVPK
IMTALGHFANDGEVKVLLKSFVANLKSTSPTIRRTAASSAASVCQHSRRASYFYTWLLNV
LLGLLVPVDEEHPNHLVLGVLLTLRYLMPQLQQQDRTTSLKGSFGVMRKEADLQPTPEQL
LQVYELTLHYSQHGDHNVVTASLELMQQMFRTPPPELLHMLITPGSVPHASVFRRDVERR
AHSGSILEFIAGGGSSCNSPLLLRKQKGKMLSGEEEGLEDDPERAEVTTGAFTASVAGAD
ATAQVVDIITQQPRSSQHALQPGDSVDLGGASSEHGTTALGTSGGEGGAGTPESPNDNAA
DEDMLSHSSSGANVXPETADYATPENAEMPDGPLLDPLGDPSLPPSADSSQTTTEGPDSA
ATPSDVAELVLDTSESLYSGMQIGTLQDEEEEGAVPSSHPEPFSQSALALSRPHLLEGRG
HNRQASDSSVDHFIPKEEPAETTELENKPSRIKGPIGHYTDQGAEPLVHCVRLLSASFLL
TGQKNGLVSDKEVRVSVKVLAVSCIGAAAALHPEVFFNSLYLEPLDGETQQEQQYISDVL
CLVAHGDPQVRGAAGVLCGAVIHSALTKTRYNIHAWMASVHTSTGNPLSLVDLVPVLQNT
LKDESSVTCKMACSAVRHCIMTLCSSTLSELGLHLLVDLLTLKDCSYWLVRTELLDTLAE
IDFRLVNFLEKRTENLHKGEHHYTGLLRLQERVLNGVVIHLLGDEDPRVRHIAAATVSRL
VSVLFYECDQGQADPVVAIARDQSSVYLQLLMHETLPPSHFTVSTITRTYRGYNLSQGVS
DVTVENNLSRVVSAVSHALTSSTSRALTFGCCEALHLLTTTYPACTWSTGWHCGYVSSTV
THPSNLNRPTSHRSRHARTHSLSQPGSGPLEEGKRSLTVGMANMMMSLLSSAWFPLDLSA
HQDALLLAGNLLAATAPQCMCSPWAGEEEGGPVPGKTEEPWAAVGERPLVVLVEQLFSHI
LKILNICAHVLDDTPPGPAVKATLPSLANAPSLSPIRRKGKEVAEPSTIPMSPKKGSETN
TGRPADSSGSTANVNKSTTLGSFYHLPTYLKLYDVLKATHTNYKVTLDLHSTNEKFGGFL
RSTLDVLSQLLEMATLHDIGKCVEEILSYLKLCFSREPLMATVCVQQLLKTLFGTNLASQ
YEGXQGGPSRSQGKALRLGSSSLRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQEQDA
SGWFDVMQKVSNQLRSSITNVTKQRGDKNAIHNHIRLFEPLVIKALKLYTTSTSVALQRQ
VLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRDSEAIVPNIFFFLVLLSYE
RYHSKQIISIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGSNKADAGKELDTQ
KEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMIGKQQMHLDS
PEALGVLNTLFETVAPSSLRPVDMLLKGMFTTPATMANVNTVQLWVSGVLAVLRVLISQS
TEDIVLSRVHELSLSPLLLSCPTIRRLRDDSSLSSPPPLATPATVAPDNQEANGERVPPE
ETFARFLLQLVGVMLDDISTRQVKVDMTEQQHTFYCQQLGTLLMCLIHIFKSGMFRRITA
AATRLLKGEAVLGAGPGVSGVFYPLEGLNAMVGCLVTTHPSLVLLWCQVLLIINYTNYSW
WTEVHQTPRRQSLSCTKLLSPHSSGGVEEERPEARLAMCNXEIVRRGGLILFCDYVCQNL
HDSEHLTWLIVNHVRDLIDLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCDNLSTSMLK
KTLQCLEQIHLSQSGSLLMQLVVDKLLNTPFRVLARMVDTLLVQLNMFSLSDPLQNSLVQ
LPVEELDRIQEYLQISGLAQRHQRFYSLLDRFRATVAEDTSSPSPPVTSHPLDGEPPPAP
ELVTADKEWYVALVMSQCCLRGDGSFLETTELLTKLPPDDLSTIMTCKDFNLSLLCPCLS
LGVQRLTRGQGSLLLETALAVTLDHLSGVTQLLPVPHRSFLPPAKPDPAEPYWDNLAIVY
GKTGLYPRVMSLCRALSQYLLCVGQLPSPLQIPEDKQHLITTFTTMATELVVWRVLQDSV
PLSVDLQGALSCLCLALQQPCVWNTLSTASYKTHTCSVIHCLRLLITAVAVGPGDHLLHP
GRKRTTGPDGDSDQVHSPNTDNVCERRSCEIMAELVEGLQSVLSLGHHRNSGIPAFLTPM
LRNIIISLSRLPLVNSYTRVPLVWKLGWSPRPGGEFGTTLPEIPVEFLQEKDVFREFLYR
INTLGWSSRTQFEETWATLLGVLVTQPISMDQEEEREQEEDLERTQLNVLAVQAITSLVL
SSMTLPTAGNPTVSCLEQQPRNKTLKVLDTRFGRKLSVIRGAVEREIQAMVSKRDNVHTH
HPYHTWDPVPSLSAVSPAGTLISHEKLLLQINTERQMGNMDYKLGQVSIHSVWLGNNITP
LREEEWGEDEEDETDTPAPASLPTSPINSRKHRAGVDIHSCSQFLLELYSQWLLPGSPSN
RRTPVVLISEVVRSLLAVSDLFTERNQFDMMFTTLMELQKSHPAEDEIMNQYLVPALCKA
AAVLGMDKATSEPVCRVLELTLHSTHLPSRMGALHGLLYVLECDLLDDTVKQLIPAVSDY
ILSNLRAIAHCVNLHNQQHVLVMCAVAFYMMENYPLDVGAEFTAGVIQMCGVMVSASEDS
TPSVIYHCVLRGLERLLLSEQLSRMDGEALVKLSVDRVNMPSPHRAMSALGLMLTCMYTG
KEKASPGRPAGAVDPQAPDSESVIIAMERVSVLFDRVRKGLPSEARVVARILPQFLDDFF
PPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHATGQSSMVTDWVLLSLSNFTQRTP
VAMATWSLSCFFISASTSQWVSALLPHVISRMGKSEVVDISLFCLVALDFYRHQLDEELD
RRAFQSVFQTVASPGNTYQQLLDCLQSIHQDTSL
NT seq
9465 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggataaattaatgaaggcctttgaatctctcaagtctttccaacaacaa
caacagggaccgccgacggccgaggagacggctcagaaacagaagaaagagctggccacc
accaaaaaggacagagtggcccactgcctgaccatatgtgagaacatcatagcccagtct
ctgagaacgtctccagagttccagaagcttctgggcatcgccatggagatgttcttgctg
tgcagtgacgacagagagtcggacgtcaggatggtggcagacgagtgcctgaacaaaatc
atcaaagcgctgatggactccaacctgcccagactgcagctggagctctacaaagaaatt
aaaaagaacggtgcctctcggagcctgagggctgctctctggaggttcgctgagctagca
cacctcgtcagaccacagaaatgcagaccgtacctggtgaacctcctcccctgtctgacc
aggatcacgaagagacaggaggagactgtccaggagaccctgtcggctgccgtgcctaag
atcatgactgctctgggacacttcgctaacgacggagaagtcaaggtgttgctaaagtcg
tttgtggccaacctgaagtccacttctcctacgatccgccggacggccgccagctcagcg
gctagtgtctgtcaacactcgagacgggcctcctacttctacacctggctgctcaacgtc
ctgctgggtctgttggtccctgtcgatgaggaacatcctaaccacctggtcctgggggtg
ttgttaacccttcgctacctgatgcctcaactacagcaacaggacaggaccaccagcctg
aaaggaagtttcggagtcatgaggaaggaggcagacttacagcccacgcctgaacagcta
ctgcaagtctatgagttgactctccactacagccagcatggcgaccacaacgtggtgacg
gcctctctggaactgatgcagcagatgttccggactcctcccccggagctactgcacatg
ctcattacgcccggcagtgttccgcacgccagcgtgttccgacgggacgtggagagacgc
gcccactccggcagcatcctggagttcattgccgggggcgggtcttcctgtaatagtcca
ctcctcctcagaaaacagaaaggcaagatgctgtcgggggaggaggaggggttggaggac
gaccctgagagggcagaggtcaccaccggggcctttacagcctctgtcgcgggcgccgac
gccaccgcccaggtggtcgacatcattacccagcagccccgctcctcacagcatgctctg
cagcccggcgactccgtggacctcggtggcgcctcctcggaacacggaacgactgccctc
gggacgtccggcggcgagggaggggcggggactcccgagtcgcccaatgacaacgcagcg
gacgaggacatgctcagccacagctccagcggggctaacgttnaccccgaaacggccgac
tacgccacaccggagaacgcggagatgcccgacgggcccctgctggaccccctgggagac
ccctcgctgcccccgagcgccgactcatcacagaccaccacagaggggccggactcggcc
gccacaccttcagacgttgctgaactcgtgttggacaccagtgagagtctgtattcaggg
atgcagattggaactttacaggatgaggaagaagagggagccgtaccttcatcacaccct
gaacccttctcccagtccgcactggctctgagtagaccccacctcctagagggcagaggt
cacaacagacaggcgtcagacagcagtgtggatcacttcataccaaaggaggaaccagcg
gagaccacagagctggagaacaagccatcgaggataaagggtccgattggccactacaca
gaccaaggggcggagcctctggttcactgtgtgcgactcctctctgcctccttcctgctg
actggacagaagaatgggctggtctctgataaagaggtccgtgtcagtgtgaaggttcta
gcagtcagctgtatcggagcagcagctgcccttcatcctgaagtcttcttcaactctctg
tacctggaaccactggacggagagacacagcaggagcagcagtatatcagtgatgtgttg
tgtctggttgctcatggagaccctcaggtcagaggtgctgcaggggtgttgtgtggcgcc
gtgatccactctgctctcaccaagacacgttacaacatacacgcctggatggccagcgtt
cacacctctacaggtaacccattgtccctggtggatctagtacctgtactacagaacact
ctaaaggacgagtcctctgtcacctgtaagatggcctgctctgcagtcaggcattgcatc
atgactctttgtagcagtactctgagtgagttgggtctgcatctcctggttgacctgctg
accttaaaggattgttcctattggctggtcaggacggaactcctggacactctggcagag
atagatttccggttggtgaacttcctggagaagagaacagagaatttacacaaaggagag
catcactacactgggttgctaaggttacaggagagagtgttgaatggcgttgtgattcat
ttgttgggagacgaagaccctcgagtacgacacatagccgctgctactgtcagcaggctg
gtcagtgtgttgttctatgagtgtgaccagggtcaggctgacccggtggtggctatagcc
agagaccagagctctgtgtatctacagttactgatgcatgagacgctaccgccttcacac
tttactgtctctaccatcaccaggacgtatcgtggttataacctatctcagggagtgtca
gacgtcacggtggagaataacttgtcaagagtcgtctctgccgtgtcccacgctctcacc
tcctctacgtcccgggccctcactttcggctgctgtgaggcgctgcatcttctgaccacc
acctacccagcatgcacctggagtacgggctggcactgtggctacgtcagctccaccgtc
acacacccatccaacctcaaccgaccaacctcacaccgctcccgacacgcacgcacacac
agcctctcccagcccggctcaggccctttagaggaagggaagaggagtctaacagtaggg
atggctaacatgatgatgtctctactgtcctctgcctggtttcctctggacctctctgct
caccaagatgctctgctgctggccgggaacctgctcgctgcgacggctccacagtgtatg
tgtagtccctgggctggggaggaggagggagggccggtccccggtaagacagaggagccc
tgggcagcggtgggggagcgccccctggtggtcctggtggaacaactcttctctcacatc
ctcaagatactcaacatctgtgcccacgtgctggacgacacgccgcccggacccgccgtc
aaggccaccctgccgtccctagccaacgctccctccctcagccccatcagaaggaaaggc
aaggaggtagcagagccaagcaccattcccatgagccctaagaaaggcagcgagaccaac
actggcaggccagcggacagctcggggtccacggctaacgtcaacaagtccacaaccctg
gggagcttctatcatctacccacctacctcaaactgtacgacgtcctcaaagctacacac
accaactataaggttacgttggacctccacagcaccaacgagaagttcggagggttcctg
cgttctacgttggacgttctgtctcagctgctagagatggccacgctacacgacatcgga
aagtgtgtggaagagatcctcagctacctgaaactctgcttctccagagaacctctgatg
gccacggtctgtgttcaacagttattgaagacgttgtttggtaccaatctagcctcccag
tacgaggggngccagggcggtcctagtcgatcccaggggaaggctctccgtctgggctcg
tccagcctgagacctggcctctatcactactgcttcatggctccctacacacacttcact
caggccctggccgacgccagcctcaggaacatggtgcaggctgagcaggagcaggacgcg
tcagggtggtttgatgtaatgcagaaggtgtccaaccagctgagatccagtatcaccaac
gtgaccaaacagagaggagacaagaatgcgatccacaaccacattcgtctgtttgaacct
ctggtgatcaaggctctgaaactgtacaccacctccacctctgtagcgctgcagagacag
gtcctagacctgctggcgcagctggtacagctacgagtcaactactgtctgctggactcg
gaccaggtgttcataggttttgtgctgaagcagtttgagtacattgaggtgggacagttc
agagattcggaggcgatcgtccccaacatattcttcttcctggttctgttgtcgtacgag
cggtaccactccaaacagatcatcagcatcccaaagatcattcaactgtgtgatggcatc
atggctagtgggaggaaggctgtcacacatgccatcccagcactgcagcctatagtccat
gacctgtttgttctgagaggctccaacaaggctgatgctgggaaggagttggacacccag
aaagaggtggtggtctccatgctgctgagactcatacagtaccaccaggtgctggagatg
ttcatcctggtcctccagcagtgtcacaaggagaacgaggacaagtggaagagactgtcc
agacagatcgctgacatcatactgcccatgataggaaaacaacagatgcacctggactcc
cctgaggctctgggagtgttgaacactctgtttgagacggtcgctccctcctctctccgc
ccggtagatatgctgctgaagggaatgttcactacacctgctaccatggctaatgtcaac
acagttcagctgtgggtgtcaggtgtcctggctgtcctccgagtcctcatctctcagtcc
actgaagacatagtcctctctcgtgtccacgagctctccctctctcctctcctcctctcc
tgtcccaccatccgacgtctccgcgacgacagcagcctctcgtcgccaccgcctctggcg
accccggcaactgtcgcccccgacaaccaggaggccaacggagagcgggtgccgccggag
gagacgtttgccaggttcctactccagctagtaggagtgatgctagatgacatctcgacc
agacaggtgaaggttgacatgacagaacagcaacacacgttctactgtcaacagctgggg
actctgttaatgtgtctcatacacatcttcaagagtggcatgttccgtaggatcacagca
gcagccacccgtctcctgaagggtgaggctgttctgggtgcaggtccaggggtcagtggt
gtcttctaccccctagagggtcttaatgccatggtgggctgcctggtgaccacacacccc
tctctggttctactctggtgccaagtcctcctcatcatcaactacaccaactacagctgg
tggacagaggtacaccagacacccaggagacagagtctgtcctgtaccaagctgctgagc
cctcattcatcaggaggggtggaggaggagagaccagaggccaggctggccatgtgtaac
nnagagatcgtacgcaggggaggactcattctcttctgtgactacgtgtgtcagaacctg
cacgactcggagcacctgacctggctgatcgtcaaccacgtccgtgacctcatcgacctt
tcccatgagcctccggtgcaggacttcatcagtgccgtgcatcgcaactcggccgcctcc
ggactgttcatacaggctatacagtcacgctgtgacaacctctctacttccatgttgaag
aagactctccagtgtctagaacagatccacctgtcccagtctggttctctgttgatgcag
ttagtcgtggacaagttactgaacactcctttcagagtcctggctcgtatggttgatact
cttttagtccagctgaacatgttctctctctctgatcctctacagaacagtttagtccag
ctgcctgtggaggaactggacagaatccaggaataccttcagatcagtggactagctcaa
cggcaccagaggttctactccctgctggacaggttccgagccaccgttgccgaggacacc
agcagcccctctcctcctgtgacatcacaccccctggatggggaaccgccacctgcccct
gaactagtcacggctgacaaggagtggtatgttgccttggtgatgtcccagtgctgtctc
cgtggtgacgggtcgttcctggagacaacggaactcctgaccaaactacctcctgacgac
ctctctaccatcatgacctgcaaggacttcaacctgtctctcctctgtccgtgtctgagt
ctgggggttcagaggttaacccggggtcaggggtcgttgttattggagacggccctggcc
gtgaccctggatcatctgagcggggtcacacagctacttcctgttccacaccgttccttc
ctgccgccggccaaacctgacccggccgaaccctactgggacaacttggctatcgtctat
ggtaagacaggactctacccgcgggtgatgtctctgtgtagagcgctgtctcagtatctg
ctgtgtgtgggtcagcttccttcccctctgcaaatccctgaagacaaacaacatctcatc
accaccttcaccaccatggctaccgagttggtggtctggcgtgttctccaggacagtgtt
cctctgagtgttgacctgcagggggctctgtcctgtctgtgtctggccctgcaacagccc
tgtgtctggaacacactgtctacagcctcgtacaaaacacacacctgctctgtcatacac
tgtctacgactcctcatcactgcagtggcagtaggtccaggtgaccatctcttacatcca
gggaggaagagaaccaccgggccagacggtgattcagaccaggtccactctccaaacact
gacaacgtgtgtgagcgacggtcgtgtgagatcatggctgagctggtggaaggtctccag
agcgttctgtctctgggtcaccatagaaacagcggaatcccagccttcctcacgccgatg
ctccgaaacatcatcatcagtctgtccagactaccgctggtcaacagctacactagagtc
cccctggtgtggaagctgggctggtcccctcggccggggggagagttcggcaccaccctt
cccgagatccctgtagagttcctgcaggagaaggacgtgttcagggagttcctctatcgc
atcaacacactgggctggagcagtaggacccagtttgaagagacctgggccacactgctg
ggagttctggtcactcaacccatctctatggaccaggaggaggagagagaacaggaggag
gacttggagcgtacccagttgaatgtgttagcggtccaggccatcacgtctctggttctg
agttccatgactctccctactgccggaaaccctactgtctcctgtctggaacaacagccg
agaaacaagacccttaaagtcctggacacacggtttggcaggaagttgtcagtgatcaga
ggagccgtggagagagagatccaggccatggtgtcgaagagagacaacgtacacacacac
cacccctaccacacctgggaccctgtcccctccctgtctgctgtctcaccagcaggtaca
ctgatcagccatgagaaactcctgctgcagatcaacacagagagacagatgggcaacatg
gactacaaactgggacaggtgtccatccattctgtgtggctggggaacaacattacccct
ctgagagaggaagagtggggtgaggatgaggaagatgagactgatactccggcccccgcc
tctcttcctacctctccgatcaactccaggaagcatcgtgcaggtgtagacatccactcc
tgttctcagttcctattggagctctacagccagtggctcctccccggttcccctagcaac
agacgcacccctgttgtgctcatcagcgaggttgtccgatcgttgttggcggtctctgac
ctgttcacggagcgtaaccagtttgacatgatgttcaccaccctgatggagctgcagaag
agtcatcctgctgaagatgagataatgaaccagtacctggtaccagctctctgcaaggct
gccgctgtcctgggcatggacaaggcgacctctgaacctgtgtgtcgggtgttggagctg
accctgcacagcacccacctccccagccgtatgggagcgctgcacggcctgctgtacgtc
ctggagtgtgacctgctggacgacacggtgaaacagctgatacctgccgtctctgactac
atactgagtaacctacgggccatagcacactgtgtgaacctgcacaatcagcagcatgtc
ttggtgatgtgtgctgtggccttttacatgatggagaactaccctctggatgtaggagcc
gagtttactgctggggttatacagatgtgtggtgtgatggtatcagccagtgaagactcc
accccctcagtgatctaccactgtgtgttgcgtgggttggagcgcctcctgctgtcggag
cagctgtctcgtatggacggagaggcactggttaaactgagtgtcgacagggttaacatg
ccaagccctcacagagccatgtctgcactgggactcatgctcacctgcatgtacacaggc
aaggagaaggccagccctggtcgcccggccggcgctgtcgaccctcaggcccccgacagc
gagtctgtcatcattgccatggagagggtctctgtgctcttcgacagggtccgtaagggt
ttacccagcgaggcacgggtggtggccaggattcttcctcagttcctggacgacttcttc
cctccgcaggacgtcatgaacaaggttatcggagagttcctgtccaatcagcagccttac
ccacagttcatggctactgtggtctacaaggtgttccagaccctccatgctacaggccag
tccagtatggtgacagactgggtgttactgtctctgtctaacttcacccagagaacccca
gttgccatggccacgtggagtctgtcttgcttcttcatctctgcctccacctcccagtgg
gtctctgccctcctgccccatgtcatcagccgtatgggtaagagtgaggtggtggacatc
agcctgttctgtctggtagccctggacttctacagacaccagctggatgaagagttggac
cgcagagccttccagtctgtcttccagaccgtggcctcgcctggcaacacctatcagcaa
ctactggactgtctgcagagtatccaccaagacacatcactctga
DBGET
integrated database retrieval system
