Oncorhynchus tshawytscha (Chinook salmon): 112241207
Help
Entry
112241207 CDS
T05605
Symbol
ddb2
Name
(RefSeq) DNA damage-binding protein 2 isoform X1
KO
K10140
DNA damage-binding protein 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03420
Nucleotide excision repair
otw04115
p53 signaling pathway
otw04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112241207 (ddb2)
09124 Replication and repair
03420 Nucleotide excision repair
112241207 (ddb2)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
112241207 (ddb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112241207 (ddb2)
03400 DNA repair and recombination proteins [BR:
otw03400
]
112241207 (ddb2)
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
112241207 (ddb2)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
112241207 (ddb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_WDHD1_1st
WD40
Beta-prop_EML_2
WDR55
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_WDR36-Utp21_2nd
WD40_RFWD3
EIF3I
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
Beta-prop_WDR3_2nd
Beta-prop_Vps41
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
112241207
NCBI-ProteinID:
XP_042162005
LinkDB
All DBs
Position
LG01:complement(2967996..3017523)
Genome browser
AA seq
503 aa
AA seq
DB search
MARAKKGPSEASESKQKSRRQNGETSGAAGQTISMKLRQKMDGKNTLKTGPVFPTTMIKS
SVGKRSGPGSILHYIYQSTLGQSLHSQMRQCLQEPFVRSLSSYKLHRTASPFDRRVTCLE
WHPSHPSTLAVGSKGGDVVLWDYNVLNKTSFIQGKGAGDFIGGMTFSLTDPSKVYLASGD
GTLTEQSFQGGPGTVLSRVQDCGHDHHNVCLWYCCVDVSLSRQMLVTGDNIGRVLLLGMD
GHQVFNGKLHKAKVTHAEFNPRCDWLMATASVDHTVKLWDLRNIKDKNTYLHEMVHDKAV
NSAYFNPVDCSKLLTTDQYDQIRVYSSSDWSTPQQIIQHPHRQFQHLTPIKATWHPLYDL
MVVGRYPDERVCPGALRTIDIYDANTGELACQLLDPNAPGIISVNKFNPMGDVLGSGMGV
NILVWNRGETLAGKQQRGELQQEAGVQVGRGRGQRRRRGETRRGGGTGGRGREDEDDIGK
LKKKLSSSSGTRTRTSRDTEGSK
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggcacgggcaaagaagggtccttcagaagcatctgaatcgaagcagaagtcgaggagg
cagaatggagaaacatctggggctgcaggacaaaccatctccatgaagcttcggcagaag
atggacgggaagaacacattgaaaacagggcctgttttcccaaccaccatgatcaaatct
tcagttgggaagagaagtggaccaggaagcatcctgcactacatttaccagagtacactg
gggcagagccttcattctcagatgagacagtgtctccaggagccgtttgtacgttccctg
tcctcctataagcttcaccgtacagccagtccgtttgaccggcgggtcacctgtctggag
tggcacccctcgcacccctccacgctggcggtcggctccaagggtggagacgtggtcctc
tgggactacaacgtgctcaacaagaccagcttcatacaagggaaaggagccggggatttt
attggtgggatgacgtttagcctgacggacccgtccaaggtctacctggcgtctggcgac
ggtacgctgaccgagcagagcttccagggcggtccaggaacggttctgtccagagtccag
gactgtggacacgatcaccacaatgtctgtctgtggtactgctgtgtagatgtgtcgttg
agcagacagatgttggtgacaggagacaacatcggacgagtcttattgctgggcatggat
ggacaccaggtcttcaacgggaagctgcacaaagccaaagtgacccatgctgaattcaac
cctcgctgcgattggttaatggcgacagcgtccgttgaccacacggtgaagctatgggac
ctgaggaacatcaaggacaagaacacttacctccacgagatggttcatgacaaagctgtt
aactcagcctactttaatccagtggactgctccaagctcctgaccacggaccagtatgac
cagatcagggtgtactcctcttctgattggtcaactcctcagcagattatccagcaccca
cacagacagtttcagcacctcacaccaatcaaggccacgtggcaccctctgtacgacctg
atggtggttggacggtaccctgacgagagggtgtgtccaggtgccctgaggaccatcgat
atctatgatgccaacacaggagagctggcatgccaactactggaccccaacgcccctggc
atcatatctgtcaacaagttcaatccaatgggagatgttttaggatctgggatgggagtg
aacatcctagtgtggaacagaggggagacattggctggtaagcagcagagaggagagcta
caacaggaagcaggagtccaggttggcagaggtcgaggccagcggaggagaagaggggag
actcggagggggggagggacggggggacgggggcgagaggatgaggacgacattgggaag
ctgaagaagaagctgtcttcgtcctcggggaccagaaccagaacatccagggacacagaa
gggtccaaataa
DBGET
integrated database retrieval system
