Oncorhynchus tshawytscha (Chinook salmon): 112241349
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Entry
112241349 CDS
T05605
Name
(RefSeq) glucocorticoid receptor isoform X1
KO
K05771
glucocorticoid receptor
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
112241349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112241349
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
otw03310
]
112241349
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys4 estrogen receptor-like
112241349
Nuclear receptors [BR:
otw03310
]
3. Estrogen like
3C. 3-Ketosteroid receptor
112241349
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Paralog
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Motif
Pfam:
Hormone_recep
GCR
zf-C4
Motif
Other DBs
NCBI-GeneID:
112241349
NCBI-ProteinID:
XP_024265230
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Position
LG08:81038570..81113790
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AA seq
808 aa
AA seq
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MDQGGVKKSRSNNDNSRVKLLLGETPSERTPLTGAPCSAMSVALATTTTSFLPSSQLMQP
GDVPSGLSNSPPPSGEDLASASVTASVGLYLEDPEPPTTKLLPQQTNTSLGLGLFTLGDT
YSRLEDSIADFHRSSPSMDSLIGGSDPNLFPMSMRTETDFSRDQDLMDMDQEGYIGKDQK
LFNDNTLDLLQDFELTGSPSDFYVGDDAFLSSLADDTLLGDESQDRGVSNSTSKPAATTT
NSGGFSGSNTTTLNGSNLLTCQDESNSSTPMTGNSPTPNTFPVVKLEKESGFIQLCTPGV
IKQEKTSAIRSYSCRMSGSTGGSTSSSPSELSSASPISICGVSTSGGQSYHFGVNSSINT
PLVSTTSGASQQKDQKPSVFSLYPPLVTVGEAWNNSSYGDGASGMQGLSSPTSSFSSSFA
SSTSRQGGGAASCTTQGKAGTAHKICLVCSDEASGCHYGVLTCGSCKVFFKRAVEGTVAR
GQHNYLCAGRKDCIIDKIRRKNCPACRFRKCLMAGMNLEARKTKKLNRLKGVQQPTMAEL
TPRPLPEARSLVPKSMPQLTPTMLSLLKAIEPDTIYSGYDGTLPDTSTRIMTTLNRLGGR
QVVSAVKWAKSLPGFRNLHLDDQMTLLQCSWLFLMSFGLGWRSYQQCDGNMLCFAPDLVI
NQDRMKLPYMADQCEQMLKISSEFVRLQVSHDEYLCMKVLLLLSTVPKDGLKSQAVFDEI
RMSYIKELGKAIVKREENSSQNWQRFYQLTKLLDSMHEMVGGLLNFCFYTFVNKSLSVEF
PEMLAEIISNQLPKFKAGSVKPLLFHQK
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaggaggagtgaagaagagcaggagtaacaacgacaacagccgagttaagctc
cttctgggcgaaacgccctcagagagaacccctctcactggtgctccctgcagtgccatg
tccgttgctttggcaaccaccaccacctccttccttccatccagccagctgatgcaacca
ggtgacgtgcccagcggactcagtaacagccctcctccctcaggtgaggacctcgcctca
gcctccgtcacggcctccgtgggcctctacctggaagacccagagcctcccaccacaaag
ctcctgccccaacagactaacacgtccctgggccttggactcttcacccttggggatacc
tactcccgcctggaagacagcatcgctgacttccaccgctcctcacccagcatggactct
ctgatcgggggctcggaccctaacctgttccccatgtccatgaggacggagacagacttc
tcccgggaccaggaccttatggatatggaccaggaagggtacattggaaaagaccagaaa
ctgttcaacgacaacactctggatctcctccaggactttgagttgacaggctccccctca
gacttttacgtaggggacgacgccttcctttcctccctggctgatgacactctgctgggg
gatgagagccaggatcgtggggtctccaactccacctccaagccagctgctactacgacc
aatagtggtggttttagcggttccaacaccaccacgttgaatggtagcaatctactaaca
tgtcaggatgaatccaactccagcacccctatgacaggcaactccccgacccccaacacc
tttcccgtggtgaagctcgagaaggaatctggcttcatccagctgtgtactccaggagtg
atcaaacaggagaagacctcggccattcgtagctactcctgccgaatgagtggtagtacc
ggcggctccacttcctcctccccctcagagctgtccagcgccagccccatctccatctgt
ggggtgagcacctctggaggacagagctaccactttggagtcaacagcagcatcaacacc
cccttggtttccactaccagtggagcttcccagcagaaggaccagaagccctcggtgttc
agcctgtatcctccgttggtgaccgtaggagaggcttggaacaacagtagctatggggac
ggagcttctggaatgcaaggtctctccagccctacctcctctttctccagtagctttgca
agttctacttccaggcagggtggtggcgctgcgtcgtgtacaacccagggcaaggccggg
accgcccataagatctgtctggtgtgttcagatgaggcgtccggctgtcactacggggtg
ctcacctgcggaagctgcaaggtgttcttcaagagagccgtggaaggtacggtggcaagg
gggcaacacaactacctgtgtgctgggaggaaggactgcattatcgataagatcagaagg
aagaactgtccagcctgccgcttccgcaagtgtctcatggcagggatgaacctggaagct
cgtaaaaccaagaagctgaaccgtttaaagggggtgcagcagcccaccatggccgagctg
accccccgtccgctcccagaggccaggtcgctggtcccaaagtccatgccccagctcacc
cccaccatgctgtctctactaaaggccatcgagccagacaccatctactctggctacgac
ggcaccctgccagacacctccacacgcatcatgaccaccctcaacaggctggggggacga
caggtggtatcagccgtcaagtgggccaagtctttgccagggttccggaaccttcacctg
gacgaccagatgactctgctgcagtgttcctggttgttcctcatgtccttcggcctgggc
tggaggtcctaccaacagtgtgacgggaacatgctctgcttcgctccagacctcgtcatc
aaccaggaccgtatgaagctgccctacatggcagaccagtgtgaacagatgttgaagatc
tccagtgagtttgtcagactgcaggtgtctcatgacgagtatctgtgtatgaaggttctg
ctgctgctcagcaccgtaccaaaggatggtctgaaaagtcaggcagtgtttgatgagatc
aggatgtcctacatcaaggagttggggaaggccatcgtcaagagggaggaaaactccagc
cagaactggcaacgcttctaccagctcaccaagcttcttgactccatgcacgagatggtt
ggtgggctgctcaacttctgcttctacacgttcgtcaacaagtctctgtcggtggagttc
ccagagatgttagcagagatcatcagcaaccagttaccaaaattcaaagccgggagcgtc
aagcccctcctcttccaccagaaatga
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