Oncorhynchus tshawytscha (Chinook salmon): 112241438
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Entry
112241438 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-17-like
KO
K16499
protocadherin delta 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112241438
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Protocadherins
112241438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
PepSY
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
112241438
NCBI-ProteinID:
XP_042173958
LinkDB
All DBs
Position
Unknown
AA seq
1153 aa
AA seq
DB search
MYLSILFLLLLWAQALALKNLNYSVNEEQGPGTVIGNIAKDAKLGLGQGGQGKKSNFRVL
ENSAPHLIDVDPESGLLYTKQRIDRETLCRRNPKCQLSMEVFANDKEICMIKVDVVDIND
NSPTFPSDQIDIDISENAAPGTRFPLTSAHDPDAGENGLKTYQITRDDYNLFSLDVKSRG
DGTKFPELVIQRPLDREERNHHTLILTATDGGEYPRSGTMQINVKVIDSNDNSPVFEQPS
YVVEIPENSPPGKVLIDLNATDPDEGSNGQVVYSFSGYAPDRIRELFSIDSRTGVIKIQG
EIDYEENPIIEIDVQAKDLGPNPIPGHCKVTVNVIDRNDNWPSIGFVSVRQGAISEAAPP
GTVIALVRVTDKDSGRNGKLLCRVLGNVPFKLEENYDNFYTVVTDRPLDREQQDEYNVTI
VAKDNGTPPLNSTKSFTVKILDENDNVPRFTKAVYLLQVPENNIPGEYLGSVLALDPDLG
QNGTVFYSILNSNVSGGDVNTFVNVNAANGAIYAVRSFNYEQIKFFDFKVLAKDAGSPHL
ESNTTVRVSVLDVNDNIPVIVLPLLLNDTAEIHVPRNVGVGYVVTTVRAVDNDYGESGRL
TYEISDGNEEHLFEMDPVTGEVRTAHPFWEDVSPMVELIIRVMDHGKPTLTTAARLIVKA
YSGPLPGGEPHINEEHHNWDTSLPLIVTLSIISMMLLAAMVTIAVKCKRENKEIRTYNCR
IAEYSHPQLGKGKKKKINKNDIMLVQSEVEERDAMNVMNVVSSPSLATSPMYFDYQTRLP
LSSPRSEVMYLKPTANNLSVPQGQGHGVGCHTSFTGPVTNTTDTPSSRMSIIQTDNFPAE
PNYMGSRQQFVQSSSTFKDPERASLRDSGHGDSDQADSDQDTNKGSCCDMSAKEALKMKA
TGVKPPPLEQEEDCVNCTEECRVLGHSDRCWMPQFPAGAGGGGANQAEGVDYRNNLFVPA
GMEAAMETTEAYETVNPNGKKTFCTFGKERRDHTILVANVKPYLKAKRALSPLLQEVPSA
SNSPTKGCSSSNNSPCASSTKSPADGAETKPSPSHYALAPDGQYHSPNKQSRDPAYPSLS
CDPVAKVLAEARSRISQEAGVGTEMDCVLEMDGDPRRELGRDGVDADQVVRDIDKLLQDC
RGSETATGTLRRK
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtatctttcaattttatttctccttctcctttgggctcaagccctggctttgaaaaac
ttgaattattccgttaacgaagagcaaggaccgggaacggttataggcaacatcgctaaa
gatgctaaactcggtctcgggcaaggaggacaagggaaaaaatctaacttcagagttctg
gagaattcagcaccgcatctcatcgatgtggacccggagagcgggctgctctataccaag
caacgcattgacagggaaacactgtgtcggcggaaccccaaatgtcagctctccatggag
gtatttgctaacgacaaagagatctgcatgattaaggtagatgtagtcgacatcaacgac
aactcgcccacgttcccttccgatcagattgatattgacatttctgagaacgcagccccg
ggcacccgcttcccgcttactagcgctcatgacccggacgctggggagaacgggctaaaa
acctaccagatcacacgagacgactacaatctgttttctctggatgtaaaatcccgcggg
gacggaactaaatttcccgagttagttattcaacggccgttagacagggaggaacgtaac
catcacaccctcatcctaaccgctacggacggcggggagtatcccagatcaggaaccatg
cagattaatgtgaaagtgattgactctaacgataacagccctgtgtttgaacagccctct
tatgttgtagaaatcccagaaaactccccacctgggaaagtattgatagatttaaacgct
acagacccagacgagggttccaatggtcaggtggtttattcattcagcggctacgccccg
gatagaatcagagaactcttctccatagattctagaacgggagtcataaaaatccaagga
gagattgactacgaggagaaccctattatagaaatagatgttcaggctaaggatttaggc
cctaaccccatcccaggccactgtaaagtaactgtgaatgtgattgacaggaatgacaac
tggccctccatagggtttgtgtctgtgaggcagggggccattagtgaggcagccccacca
ggcacggtcatcgccctggtcagagtcacggataaagactctgggaggaacgggaagctg
ctgtgtagagtcttggggaacgttccgtttaaactagaggagaactacgacaacttctac
accgtggtgacggacaggcctctggacagagaacagcaggacgagtacaatgtcaccatc
gtcgccaaggacaacggcacgccgccccttaactccaccaagtcgttcacggtgaagatt
ctagacgagaacgataatgttccgcgtttcaccaaggctgtgtatctgctccaggtgccg
gagaacaacatccccggggagtatctgggttccgtcctcgctctagacccggacctgggc
cagaacggaaccgtgttctactccatcctcaactccaacgtgagcggaggagacgtcaac
acgttcgtgaacgtgaacgcggccaacggggcgatctacgccgtgaggtcattcaactac
gaacaaatcaaattctttgattttaaggtcttggcgaaggatgctgggtctcctcacctg
gagagcaacaccacggtcagggtcagcgtcttagacgttaacgacaatatccccgtcatc
gttctcccgctgctcctgaacgacacggcggagatccacgtgccacggaacgtcggcgtg
ggttacgtcgtcaccacggtgagggcggtcgacaacgattacggcgagagcgggcggttg
acctacgagatctccgacggtaacgaggagcatctgttcgagatggacccggtgacgggc
gaggtacggaccgcccaccccttctgggaggacgtcagccccatggtggagctgatcatc
agggtgatggaccacgggaagcccaccctcaccaccgccgcacgcctcatcgtcaaggcc
tacagcggaccgctgccgggcggcgagccccacatcaacgaagagcatcacaactgggac
acgtcgctccctctcatcgtcaccttatccatcatctctatgatgctgctggctgccatg
gtaaccatcgccgtgaagtgcaaacgggagaacaaggagatcaggacgtacaactgccgc
atcgcggagtactctcacccgcagctgggcaaaggcaagaagaagaagatcaacaagaat
gacatcatgctagttcagagcgaggtggaggaacgggacgccatgaacgtcatgaacgtg
gtgagctccccgtcgctcgccacctcccccatgtatttcgattaccagacgcggctgccg
ctgagctcgcccaggtcggaggtcatgtacctcaagcccacggccaacaacctgtcggtg
ccccagggacagggccacggcgtcggctgtcacacgtccttcactggcccggtgactaac
accacagatacccccagtagcaggatgtccattatacagacagacaattttcccgctgag
cccaattacatgggcagcaggcagcagtttgttcaaagcagctcgacattcaaggaccca
gagcgagccagccttagagacagtggtcatggcgatagtgatcaggccgatagcgaccag
gacactaataaaggctcctgctgcgacatgtcggccaaggaggctctgaagatgaaggct
acgggcgttaaaccacctcctctggaacaggaagaagactgtgttaattgcacagaggag
tgcagagtcctcggccactccgaccgctgctggatgcctcagttcccggcgggggcggga
gggggaggagccaaccaggcagagggcgtggactaccgcaacaacctgttcgtccccgcg
gggatggaggctgccatggagaccacagaagcctacgagaccgtcaaccccaacgggaag
aaaaccttctgcaccttcgggaaggagcgtcgggaccacaccattttagtggctaacgtc
aagccttacctgaaggccaagagagccttgtctccgcttctccaggaggtcccctcagcc
tccaactcccccactaaaggctgctcctcctctaacaactccccctgtgcctcctccact
aaatcccccgcagacggagccgagaccaaaccctcccccagccactatgctctggccccc
gacgggcagtaccactcccccaacaaacagagcagagacccagcctacccttctctttcc
tgcgacccggtggccaaggttctagcggaggcccggtcccgaatcagccaggaggctggg
gtgggaacagagatggactgtgttctggaaatggacggggatccacggagggagctgggg
cgggacggggtcgatgcagaccaggtggtcagagacatcgacaaactgctgcaggactgc
agaggcagcgagacagccaccggcactctcagaagaaagtga
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integrated database retrieval system
