Oncorhynchus tshawytscha (Chinook salmon): 112241524
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Entry
112241524 CDS
T05605
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04382
Cornified envelope formation
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112241524
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112241524
09142 Cell motility
04820 Cytoskeleton in muscle cells
112241524
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
112241524
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112241524
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112241524
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
112241524
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112241524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
112241524
NCBI-ProteinID:
XP_024265375
LinkDB
All DBs
Position
LG03:64717343..64850430
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AA seq
1681 aa
AA seq
DB search
MSGAMQATHQRQLKNLRFLILCFSVAILASGVDAGGKKHSGPCGGRDCSGGCQCFPEKGA
RGQPGLLGSQGPQGPPGRLGDPGVQGVQGEKGDRGRGGFIGPKGSVGMTGVPGFSGLDGI
PGHPGQAGPRGKPGADGCNGTHGDSGSAGQPGYDGQPGYNGQMGRKGQKGDTLELSVFME
RFRGDSGQPGYPGLVGPQGYPGRSGYRGLPGPQGPQGYPGLPGPKGTMTKVLKGVKGEPG
DAGKPGPQGNSTHSQTGPITGPNGIKGEKGLKGDTGPEADNKGETGVIGMPGQRGIPGRD
GEQGLRGDLGEPGLRGRDGQKGARGEPGELIYHDGPSGGQDRVGPPGPPGQLGPQGQRGL
EGEKGLPGRAGPPARKDHDQQQVVDLWGPFGEPGVKGEMGEPGELGIPALSPGPPGINGL
PGLGGPPGPPGSWADFYKGFSGPRGRPGSAGRKGLKGDHGLCECNIVHSPPGLPGPAGSQ
GDTGKSGEVGQQGESGEPGPRGVIGLPGFPGATGQPGPKGRKGEFVQAKEKGYAGDPGDP
GATGDPGMQGFPGPSGINGFPGNRGPSGDAPAGLTGEKGYQGRPGLPGLLGQMGEPGRVL
GTTKGVRGLQGDDGEQGHAGIKGRAGDPGVSGCSPKGDGEQNDITGDCDAIPGPPGIPGP
PGPHGLEGFLGLPGQKGSTGVLGDNGAKGEIGDQGRGGSPGYPGFRGLHGDLGQPGSKGN
SGTQGLPGQQGRNGEPGEKGPHGEIWGASTGQRGEVGLPGEQGPKGLSGEPGNEGYPGMG
GMPGMIGFKGVVGPSGLQGEQGGPGAAGKYGWPGVPGTAGVPGPTGSTGQPGLSGNRGDQ
GDPGTPGPIGLKGTLGEFGSQGAEGNTGDQGDPGVPGPTGHSGLPGFKGIKGSRGMSGFG
GMPGVSGLKGFSGQKGETGNPGEFGQKGNMGDYGSKGDRGLRGPTGEKPHIPRQIIKDMK
GTKGEDGTTGQIGFTGPRGPKGFPGVPGMEGYHGVPGDPSDEKGFQGNPGAQGLPGPKGM
PGLTGSNGISGFPGMSGHRGDKGNPGAYGSSGDPGVKGVKGEGGAVIDMPGSTGLRGEDG
FPGLPGQKGYIGNLGDRGGGGFHGIEGMKGVPGEPGTGGPVGSDGQQGFPGNQGTKGWPG
VPGESGTHGQPGFPGQRGFPGLKGIFGLDGLKGQKGIPGLPGQDNFGTPGDPGAKGARGE
TGIPNSEVGTPGSLGLKGVQGQPGDQGQVGPPGFQGPQGPQGTSDRPGPSGEPGFPGPKG
LPGFPGPRGLPGEPSQYGEKGLTGQYGVTGFPGLKGKQGDQGPSGYQGQSGVSGKKGVKG
GQGMMGFPGRSGFQGDRGPSGPKGSTGLTGYPGFPGNQGPAPLPTRMPGERGAPGPQGIR
GPEGVRGESGPKGPPGDPGYFGPQGQKGMPGVGGTPGTPGYRGNVGGRGHLGLQGMEGHH
GNPGTTGLHGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQD
LGLAGSCLPRFNTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVEEGDIKPYISRC
SVCEAPSVAIAVHSQDITIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQSLSSPGSCLEDF
RTTPFIECNGAKGTCHYFANKHSFWLTSIEQSFHAEPASETLKAGQLLSRISRCQVCMKN
L
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atgagtggggcaatgcaggcaacacaccagagacaactgaagaacctgaggtttctgatt
ctatgtttttcggtggccatcctagcgtcgggagttgacgcaggtggaaagaagcacagt
gggccatgtggagggagagactgcagcggagggtgtcaatgcttccctgagaaaggtgcc
agaggccagcctggtcttcttggttctcagggcccccaggggcctccaggacgtctaggg
gacccaggagtccagggagtccagggagagaagggcgacaggggcagaggaggcttcatc
ggccccaagggttctgtggggatgactggtgttcctgggttttccgggttggatggtatt
cctggccacccaggacaggctgggcctcgtgggaaacctggagcagacgggtgcaacgga
acacacggagactcagggtcggcagggcaaccaggctacgatggccagcccgggtataat
ggccagatgggcaggaagggacagaagggagacactctggagctgagtgtgttcatggag
cgcttcaggggagattcagggcagcccggatatcctggattagttggtcctcagggttac
ccaggtcggtctggctacagaggactcccgggaccacagggcccacaagggtatcctggt
cttcctgggccaaagggcaccatgaccaaagtgttgaaaggggtcaaaggagaacctggt
gacgctggaaagcctggtccccaagggaactccacccattcccagaccggtccaattact
ggacccaatggcataaagggcgagaaagggttgaaaggtgatactggtcctgaggctgac
aacaaaggagagactggtgttatagggatgcctggacaacggggcatccctggtcgggat
ggagagcaaggactgaggggggacttgggagaaccaggactgaggggcagagatggtcaa
aagggtgccagaggagaaccaggggagctgatttatcatgatggtccctcaggagggcag
gacagagttggtccccctggtcctcctggacagctgggtccccagggccagaggggtctg
gagggggagaaaggtcttccaggccgcgctggacctcctgccaggaaggatcatgatcaa
caacaagtggtggatctgtggggtccattcggagagccgggggtaaagggagagatgggc
gaacctggagagctaggtatccctgccctcagccccggacccccgggtatcaatggcctg
cctgggctcgggggcccacccggaccaccaggatcgtgggcggacttctacaagggattt
tcagggccgagagggcggccaggctctgcgggaagaaaaggactgaaaggtgatcacggg
ttgtgcgagtgcaacattgtccattcccctccgggcctgcccggccctgctggtagccaa
ggcgacactggaaagagtggcgaggttggtcagcagggagagtcaggagagccaggaccc
cgaggtgtcatcggactgcctgggttccctggtgccacaggacaaccgggtccaaagggc
aggaagggcgagttcgttcaggccaaagagaaaggatatgccggggacccaggagaccca
ggtgcgacaggtgacccaggaatgcagggcttccctgggcccagtgggatcaatggattc
cctgggaatcgtggtccttcaggagatgcacctgctggtctcactggagaaaaaggttat
cagggccggccgggtctgcctgggttgttgggacagatgggagaaccaggacgggttcta
ggtacaactaaaggggttcgagggttgcaaggcgatgatggggagcagggtcatgctggt
atcaaaggtcgagctggcgatccaggagtgtctggctgtagtccgaaaggagatggagaa
cagaatgacatcacaggtgattgcgatgccatacctggaccacccggtataccaggacca
ccaggaccccacgggttagaaggtttcctaggtctcccaggtcaaaaaggatcaacaggt
gtacttggagataacggggccaaaggagagataggagatcaaggcagaggagggtcacct
ggatatccaggttttaggggcctccatggagacttgggtcagcctggctcaaagggtaat
tctggaacccaaggtctgccaggtcaacagggtcggaacggggagccaggagagaaggga
cctcacggggagatctggggagcgtcaaccggacaacgtggagaagtgggtcttcctgga
gagcagggacctaaagggctcagcggagagcctggaaacgagggttacccagggatgggt
ggcatgcctggtatgattgggttcaagggcgtcgtaggtccttcaggtctgcaaggggag
caaggaggaccgggagctgctgggaagtatggctggccaggtgtacccggaacggctggt
gtccctggaccaacaggaagcaccggacaaccaggtttgagcggaaacaggggtgatcag
ggggaccctggcacaccagggcccataggactaaaggggacactgggggagtttggtagt
cagggcgctgagggaaacaccggagaccagggtgaccccggagtgccaggacctacagga
cactctggcctgccagggttcaagggtatcaaagggtctcgtggcatgtcagggtttgga
ggaatgcctggtgtgtcgggcctgaagggcttctctggacagaaaggagagactggcaat
cccggcgaatttggacagaaaggaaacatgggcgactatggttcaaagggtgaccgtggt
ctgaggggtccaactggcgagaaaccccacatccctcgtcagatcatcaaagacatgaag
gggacaaagggagaagatggaaccacaggacagattggattcactggacccagaggtcct
aaaggttttcccggtgttccgggaatggagggctaccacggcgttcccggagaccccagc
gatgagaagggtttccaaggcaacccaggcgcacagggacttccggggccaaaaggaatg
cctggtctgacaggatcaaatggaatcagcggctttcccgggatgtctggtcacaggggg
gataaaggtaaccccggtgcctacggatcctcaggagatccaggagtgaagggtgtcaaa
ggtgaggggggtgccgtaatcgacatgcccggatccacaggactgaggggggaggatggt
ttccctgggcttccaggtcagaagggctacattgggaatctgggagacaggggaggtgga
ggtttccatggtattgagggcatgaagggcgtgccaggtgaacctggcacaggaggacct
gtaggatctgatggtcaacaagggtttccaggcaaccagggtacgaagggatggcctggg
gtccccggagaatcaggcacacatggacaaccaggcttccccggacagagaggtttcccg
ggactaaagggtatattcggactggatgggctgaagggtcagaagggaatccctggactt
ccaggtcaggataactttggaaccccaggtgaccccggtgctaagggagcgaggggagag
acaggtatacccaactccgaggttgggacacccggatcgctgggtttgaagggagttcaa
ggacaaccaggtgaccagggccaggtgggacccccagggtttcagggcccccaagggcca
cagggcacctcagacagacccggaccgtcaggagaacctggcttccctggacccaaagga
ctgccaggtttccctgggccccgtggtttacctggtgagccctctcaatatggagagaag
ggtttaactggccagtatggcgtcactggattccctggtctgaaaggaaagcagggggat
cagggaccatcaggataccaaggacagagcggagtgtctgggaagaaaggtgtgaaggga
ggtcaagggatgatgggatttcctggtaggtctggtttccaaggagaccgaggtccttcc
ggcccaaaaggaagtactggactcacaggttatccaggattcccaggtaaccagggccca
gccccactacccaccaggatgccaggagagaggggtgctccaggtcctcagggtatccga
ggaccggagggggtacgaggggagagcggccctaaaggaccccctggagatccaggctac
tttgggccccaggggcagaaggggatgccaggggtgggtggcacaccaggtacccctggg
taccgtgggaatgttggagggaggggccatcttggtctgcagggcatggaaggtcaccat
ggtaacccaggaactacagggttgcatggcatgccgggccgcagtgtgagcgtgggatac
ctgctggtgaagcacagccaatcagagcagacccccatgtgccccgtgggcatgtcgaag
ctgtgggacggctacagtctgctgtacttcgagggccaggagaaggcccacaaccaggac
ctaggtctggcgggctcctgcctccctcgtttcaacaccatgcccttcctgtactgcaac
cccggagacgtctgctactacgccagccgcaacgacaaatcctattggctgtccaccacc
gcgccccttcccatgatgcccgtggaggaaggtgatatcaaaccctacatcagccgctgc
tctgtgtgcgaagctccgtccgtcgccatcgccgtgcacagccaggatattaccatccca
caatgccctgctggctggcgcagcttgtggattggttactccttcctcatgcacacggca
gcaggtgatgagggtgggggtcagtctctgtcatctcctggttcctgtctggaggacttc
cgtaccacacccttcatcgagtgtaacggggccaagggcacctgccactacttcgccaac
aaacacagcttctggctcacctccatcgaacagtccttccatgcagaacctgcctcagag
accctgaaagcaggccagctcctctcacgcatcagccgttgtcaggtctgcatgaagaac
ctgtga
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integrated database retrieval system
