Oncorhynchus tshawytscha (Chinook salmon): 112241612
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Entry
112241612 CDS
T05605
Symbol
ciita
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
otw01001
]
112241612 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
otw04054
]
112241612 (ciita)
Enzymes [BR:
otw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
112241612 (ciita)
Protein kinases [BR:
otw01001
]
Serine/threonine kinases: Other
TAF1 family
112241612 (ciita)
Pattern recognition receptors [BR:
otw04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
112241612 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
VapE-like_dom
nSTAND_NTPase5
AAA_16
LRR_14
RsgA_GTPase
nSTAND3
ABC_tran
AAA_22
DUF815
Motif
Other DBs
NCBI-GeneID:
112241612
NCBI-ProteinID:
XP_042173415
LinkDB
All DBs
Position
Unknown
AA seq
1108 aa
AA seq
DB search
METLDARQTGARMQDMDIMDLHPSPTPEVEDFLPELDLDGFLEHEDFPFDFNDALFDLDF
SVDIQTGEVAIPTAVAEPGDQKQNCETQRELGDGQRKRETEIGDRQRKRGSTEAGDGQRK
RGSTEAGDGQRKRGSTEPGDRQRKRAKRRATAPGDGQRKRETQTDSPIRGCAGSPPLSAV
TLSPPPRLVQIAPSLLYIPGFGTATFVSSCSNGSGLQLVQAPVLGFSRPPTYILMSSPSL
SPRTLDVLPLSPEEYIHQAKAHLRGMCQEMEAGLSLASHYVDVRLVQRQILIGSGKNTSK
CLEKDLVVIGDAERRRGSLARSQVFESSPGAKPKRSIVLLGNAGMGKSTLIKKLCVDWSD
GLLPQFDFVFLLDGKALTLPPEPTYSLRSLLLHLSCPHPRDVFNQVLSVPERVLVLFDGF
EVVRDLEGLLQSPADDSKGENYSVRQLFSGLLQRKLLPGCSLLLSARPRGTVSGLLRRAD
SLLELSGFSPPDIERYLGQYFSGQSLESPISVPASDSIPVPTSVLAPVPDSVLASAPVSV
PVPVSVPVPASVPVSVPVPVPTSAPVPVPREEEEREREEGEKEREEKREEEEREGEEGEE
EREEEREEENRCVLSELSGLAWQGVKGHSSLLTLTLDNTVYVKLRLFGLRTGLVHSHCLR
GEQGRDGDGGGVSSDNILSWAHPFLQSFLGGAHLSVSSCVSDRALLAQILPQPRGRRRPQ
GECLDLAQRFAVGLLFRNNAELRDLATLDTGAMKVVAAKRAAVISHLENLHHGDLSPARL
LEACHCVYETGDIRLVRHLVRNLPEVLSFQGVPLCPADAFVVWNLLDQCRTLRRRFCLGL
EDTGLRMTGLKLLTGLNNIHSYRACIADTITLWEELEQSGEEELLKAVVSKLTLNPFRAT
QVSHVQHLSTLVNIHTSRRLSESQSDGVLGEGLPAVRDLHKLEFELGPVNGPLALPKLLE
LLPALHSLHHLDLENSKLGDSGAEGLAGAVLSLSSLQIINLSQNCIGDQGIGSLAPALST
LPSLHCLSLYSNVISDGGAESLAAVLPQMTSLSDLDVKYNSFTALGAQSLASSLRDCPWI
KSLGMWNVCIPYGVLERLQQQDPRIQLL
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atggagactctcgatgcccgccagacaggtgccaggatgcaggatatggacatcatggat
ctgcacccctcccctacacctgaggttgaagactttctgccagaattagacctggatggc
tttctggaacacgaagattttccttttgacttcaatgatgcgctgtttgacctggacttt
agtgtggacatacagactggtgaggttgccataccgacagctgtggccgagccaggcgac
cagaaacagaactgcgagacacagagagagcttggtgacggacagaggaagagagagaca
gagattggtgacagacagaggaagaggggatcgacagaggctggtgacggacagaggaag
aggggatcgacagaggctggtgacggacagaggaagaggggatcgacagagcctggtgac
agacagaggaagagagcgaagaggagagcgacagcgcctggtgacggacagaggaagaga
gagactcagacagactctcccatcagaggttgtgctggttctcctcccctctcggccgtg
actctctctcctcctcccaggcttgtccagatcgctccttctctcctttacattcctggg
tttgggactgctactttcgtctcttcgtgtagcaatggctcagggctgcagctcgttcaa
gcccctgttctcggcttctcaagacctcccacctacatactgatgtcttctccgtcgctg
tctcctagaaccctcgacgtcctacctctctctccagaggagtacattcaccaagccaag
gctcacctgaggggaatgtgccaggagatggaggcgggccttagcctggcgtcccactat
gttgacgtgcgattggtccagaggcagatcctgattggctcagggaagaacaccagcaag
tgcctggagaaagatttggtcgttatcggagacgcggagaggaggcggggctcgttggcc
aggagtcaggtgtttgagagctcccccggggcgaaacccaaacgttccatcgtgttgcta
ggcaacgccggcatgggcaaaagcacgctcatcaagaagctctgcgttgattggtccgac
ggcctcctgcctcagtttgactttgtgttcttactggacggtaaggctctgaccctcccc
cctgagccgacctatagcctacggtccctcctcctacacctctcctgcccccacccacgg
gatgtcttcaatcaggtcctctctgtcccggagcgtgtgctggtgctgttcgatggcttc
gaggtggtgcgtgacttggaggggctgcttcagtctccagcggatgacagtaaaggggag
aactacagcgttagacagctgttctctggtctgctccagaggaagctgctaccaggctgc
tctctgctcctctctgcccgaccacgaggcaccgtcagtgggctgctgagacgggctgac
agcctcctggaactgtctggcttctcccctccggacatcgagagatacctgggacaatac
ttctctggacagtccctagagtccccaatctcagtcccagcctcagactcaatcccagtc
ccaacctcagtcctagcaccagtcccagactcagtcctagcctcagccccagtctcagtc
ccagtcccagtctcagtcccagtcccagcctcagtcccagtctcagtcccagtcccagtc
ccaacctcagccccagtcccagtcccaagggaggaggaagagagagagagggaggaggga
gagaaagagagagaggagaagagggaggaggaagagagagagggggaggagggagaggaa
gagagagaggaagagagagaggaagagaacaggtgtgttctgtcagagttgagcggtctg
gcttggcagggggttaaaggtcattcatctctcctgaccctgactctggacaataccgtc
tatgtcaagctgcggttgtttggcctgaggactggactggtccattctcactgtctgagg
ggggagcagggcagagatggtgacggtggcggcgtgagttccgacaacatcctgtcctgg
gcccaccctttcctgcaaagcttcctgggcggggcccacctgtccgtctccagctgtgtg
tctgaccgcgctctgctggcccagatactaccacagcccagggggaggcgacggcctcag
ggagagtgtctggaccttgctcagcgattcgctgtcgggctgcttttccggaacaatgcg
gaactccgggatctggccaccctggataccggcgccatgaaagtggtggcggccaagcga
gccgctgtgatatcacacctggagaaccttcaccatggcgacctgagccccgcccggctc
ctggaagcgtgtcactgcgtttacgagacaggcgacatccgcttggtcaggcacctggta
cggaaccttcccgaggttctgtcgttccaaggggttccgctgtgccccgccgatgccttc
gtagtgtggaaccttttggaccagtgtagaacgctgaggaggaggttctgtctggggctg
gaggacacaggactgaggatgacaggattaaaactactgacgggtctcaacaacatacac
tcatacagggcgtgtatcgctgacaccatcactctgtgggaggagctagagcagagtggg
gaggaggagcttctgaaagcggttgtgtccaagttgacccttaaccctttcagagccaca
caggtgtcccatgtccaacacctgtccacactggtcaacatacacacaagcaggagactg
tctgagagccaatcagatggtgtcttgggggagggtcttcctgcagtcagagatcttcac
aagctggagtttgagctggggccagtgaatggtcctctggcgctccctaaactcctggag
ctgctgccagccctgcacagtctacatcacctggatctggagaacagtaaactgggggac
agtggggctgaggggctggctggagctgtgctgtctctctcctctctgcagattatcaat
ctgtcccagaactgtataggagaccagggaatagggagtctggctcctgctctgtctacc
ctcccctcactgcactgtctcagtctgtacagtaatgtgatatctgacgggggtgctgag
agtctggctgctgttttacctcagatgacatcactcagtgacctggatgtcaagtacaac
agtttcacggccctaggagctcagagtctggcttccagtctgagggactgtccatggatc
aagagtctggggatgtggaatgtgtgtattccctacggagtgttagagagactgcaacaa
caggacccacggatacaactgctctag
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integrated database retrieval system
