Oncorhynchus tshawytscha (Chinook salmon): 112241878
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Entry
112241878 CDS
T05605
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like isoform X1
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112241878
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
112241878
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
112241878
NCBI-ProteinID:
XP_042158278
LinkDB
All DBs
Position
LG20:complement(22012988..22140436)
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AA seq
2156 aa
AA seq
DB search
MTTAANWVANGASLEDCHSNLFSLAELTGIKWRCYSFRGGGEYGPVISAPAQDDPVLRSF
MRCVQANLLCVWRRKVKPDAKELWIFWWGDEPNLSDVIHHELEVAEEGQWECGLSYECRT
LLFKAIHNLLERCLLDKDFVRIGKWFVKPYKLEEKPLATSEHLSCSFTFFLHGESNVCTS
VEIAQHQPAYHITDDHIRLAQTSSAPVQVILSPYGLSGSLTGQAYKMSDQAVRKLMEEWS
YFYPMVLQCHREGGTGGASMGGMGAEREGTDLPFDPNSHVAVEVIVGGVRMVYPAAFVLV
AHGDLPVDQPQPAPGAQGLSRDPSHCSIPLTPPTSPEQPCSADSGFVTVSSILLAQERAI
GATNHSPKHSGKKLTNQVVHQAWMECYLNQLQHKCSVPSSVTPKKEAPNGVTTWDFIDSG
ERAPCSCSRLKQQKQQQQTNTSSANPPSGANPTPSLGPALPPPSLPKHKATDKSEKPDKQ
PKRVAAMTPFHHRLSVGQETCLEQDSTGGSQLGLVALDPLLDPMPTCKYPKTLSAGRKAP
QSLLHSPVSPLPPTLSPHPRVGQDPEVLDAPVGMAPCPDGASGLGVMEPSATALYAAPLG
PREREAGASWWRGFRTPRADKAEFRPPELPSDRVELKTETQATEGVALKRLFAQTEKCFK
ISEERVREHIQTLGLLQQPGVEGLGDLGEDPYDFKEGDIEYSFPTSKRLKGRDPSKRGPK
GEDISNGALPDGKDAMSIFSSAPKADDDSPQDDEAAKAQNPPLTRETDLVVLISDLENIF
DEDEEELGTACPNQHTARVLVSGGEDRRDGRVAVPYPSTVADLQRMFPTPPSLEQHPAFS
PIMTYRDTPSQEPPAPSGGSDHPLGPLSSTQLQEYRMEVEEGMASPKHEDIKDFSFVYRV
PSVQPQMGCSMFAPLRTLPSQCLPPIKVPDQCYYRPSWALLPKMEHYSSLPSSFIRDGYV
NVPSVGDQEYAQMSASALSIGTTGGILPSPSPATPRFSVPTPRTPRTPKGVGTASGQGSV
KQEGTGTELSSPASTPSTSLPMSSLTEPHASCPALPEAHSLYATLLLSDSVLNVFKDRNF
DSCCICACNMNVKGADVGVYIPDSTLEDQYRCMCGFSAIVNRRLAHGTGLFLEDELDIFG
RGSEVGRAAERRLALCRRDPPMGDPRAKRPQDSSPAPSSVMELLQEQCSQPISSLASLHL
PPACSCHGRQGALLQSWMSDKQWADGSDACVECYNALVQGQQYVDNPAGGKVDPAVVRSS
ALHSWPHTNVLDISILSSQDVVRMLLSLQPFLQDAIQKKRTGRTWENIQHVQGPLTWQQF
HKMAGRGSYGSEESPEPLPIPTLLLGYYDNYDRNFLALSPLALPFWEKLLLEPYGGQRDV
AFLVLCPNSETLLAGAQAFFQELSAVYETCRLGKHRPLAKVSRDGLVRVGAETETETDKE
KEKERHEEEQIDQWFTGPWAGQQHSDNLRKLKLYARTCRKQLGPQLSALSLDSSLLLPPK
PQPPPAPTPSSAQPAPSSSQPPYGPGAPAEGEATAPPVALSSESNPTPTAAAASLQPGPA
ESTQGGSTEVKNTPNAPPPPSQPENPESVAERERIGIPTLADSADSHAHPPAIVIYVVDP
FLCSGRARDGGEEEEGEEVEAGSVWLLGLLRCYTEMLQTLPESMRPALVLQVVPCQYLLQ
PASGESPLYLQHLRSLAFSAYSQCRRLLTTQTHIKSLTGFGPASTLESVLKSPEHPSPLQ
GYSPPYILGPTRAKQPEPGEVWAEIPPRYNVLFVGYCLSHDQRWILVSCTDQQGELLETC
IINIDVPNRARWPKVSARKMGLQKLWDWCVGIIQMTSLPWRIVIGRLGRLGHGELKDWSA
LLGEHSLHSISRQLKEACRMCGISSADSPSILSACLVAMEPQGSIVVMPDAVTMGSVFGR
STALNLQTSQLNTPQDASCTHILVFPTSATTQLAASSYPTEDNADDMFDLPFPDELENDI
GHDILNLHPSPNTSPVPSPGSPSGMGGSSHFQHNRSQGDRFLSRENPPEELKQQPLALGY
YVSTAQADSLPHWFWASCPQAQNQCPLFLKASLHHHIAIATAQSDEPNQTSSDKTTKRIP
HPLDSKTTSDVLRFVLEQYNALSWLTCNPATQDRRSCLPVHLAVLTQMYNAILNML
NT seq
6471 nt
NT seq
+upstream
nt +downstream
nt
atgactacggcagcgaattgggtggctaacggggcaagccttgaagactgccactccaac
ctcttctctctggcagagctgacgggcatcaagtggaggtgctacagcttccgtggcggg
ggcgagtacgggccagtgatctcggcaccagcccaggacgacccggtgctgcgcagcttc
atgcgctgcgtgcaggccaacctcctgtgtgtgtggcgccgcaaagtcaagcctgacgcc
aaggagctgtggatcttctggtggggcgacgagcccaacctctctgacgtcatccaccac
gagctggaagtggctgaggagggacagtgggagtgtgggctgtcatacgaatgccggacc
ctcctgttcaaggccattcacaacctgctggagaggtgtttgttggacaaggactttgta
cggatcgggaagtggttcgtcaagccatataagttggaggagaagcctctggccaccagt
gagcacctatcgtgctccttcaccttcttcctgcatggggagagtaatgtgtgcaccagc
gtagagattgcccaacaccagcctgcctaccacatcactgatgaccacatccgcctggcc
cagacctcctcagcccccgtacaagtgatcctgagtccgtatggtctgtcgggctctctg
acgggccaggcctataagatgagtgaccaagctgtgaggaagctgatggaggagtggagc
tacttctaccccatggtgctgcagtgccatagagaggggggaacaggaggtgccagcatg
gggggcatgggtgcggagagggagggcactgacctgccgtttgaccccaacagtcatgtg
gccgtcgaggtcatcgtaggtggtgtgaggatggtctacccagcagcctttgtgctggtt
gcccatggcgacctgcctgtggaccagccccaacctgcccccggagcccaggggctcagc
agagacccctcccattgtagcatccccctcactccgcccacctcacctgaacagccctgc
tcagcagacagtggctttgtgacagtgtccagcatcctccttgcccaggagagggccatt
ggagccaccaaccacagcccaaagcattctgggaagaaactgaccaatcaggtggtgcat
caggcatggatggagtgttatctcaaccaactgcaacacaaatgcagtgtgcccagtagc
gtgacgccaaagaaggaggcgccaaacggggtgaccacctgggactttatcgactcgggc
gagagggcgccctgcagctgctccaggttaaagcagcagaaacagcagcagcagaccaac
acctcatctgccaaccctccgtctggtgctaaccccaccccctccctgggcccagcactt
cctcctccctccctgcctaagcacaaggccacggacaagtcagagaaacccgacaaacag
cccaagagggtcgccgccatgacccccttccaccaccggctctctgtgggccaggagacc
tgcctggaacaagactccactggagggtcccagctcggcctagtcgccctggaccctctc
ttggatcccatgcccacctgcaagtaccccaagaccctctcagctggcaggaaagccccc
cagtccctgctccactctcctgtctccccattaccccccacgctcagcccccatccacgg
gtggggcaggaccctgaggtactggatgctcctgtgggcatggccccctgtccagatggg
gcgtcagggctgggggtgatggagcccagtgcgactgctctctatgcagcccctctgggg
cccagagagagggaagctggggcgagctggtggaggggcttcaggactcctagggctgat
aaggctgagttcaggcctccagagctgcccagtgacagagtggaattaaagacagagaca
caggccactgagggagttgcactgaaaagactatttgcacagacagagaagtgtttcaag
atatccgaggagcgtgttagggaacacatccagaccctgggtctactgcagcagcctggg
gtggaagggctgggggaccttggggaagacccatatgacttcaaggagggagacatcgag
tacagcttccccacctccaagagactgaagggccgagaccctagcaagagaggccccaaa
ggagaggatatcagcaacggtgcactgcctgatgggaaagatgccatgtccatctttagc
tctgcccccaaagctgatgatgactcaccgcaggacgatgaggcagccaaagcccaaaac
cctcctctaaccagggagactgatctggtggtcctcatctcagacctggagaacattttc
gacgaggatgaggaggaacttgggactgcttgccccaatcagcacacagccagggtcctg
gtatcaggaggtgaagaccgaagggatgggagggtggctgtgccctatccttcaacagta
gcagacctccagcggatgttccccacacccccttccctggagcagcacccagccttctcc
cccatcatgacataccgtgacacccccagccaagagccaccagccccctcggggggctct
gaccaccccctgggccccctgtcctccacccagctccaggagtaccggatggaggtggag
gaaggcatggccagtcctaaacatgaggacattaaggacttctcatttgtgtaccgtgtc
ccgtctgtccagccacagatgggctgctccatgtttgctccgctgcggaccctccccagt
cagtgtttgccccccatcaaggtgcctgaccagtgttactaccggccctcctgggccctg
ctgcccaagatggagcactactcctccctgccgtcctccttcatcagagatggatatgtc
aacgtccccagtgttggggaccaggagtatgcccagatgagtgccagtgccctatccata
ggcaccaccggtggtatcctcccctcgccgtcccctgccaccccccgcttctctgtcccc
acccctcgtaccccgcgcaccccaaagggcgttggcacggccagcgggcagggctctgtg
aagcaggagggcaccgggacagagctgagctcccctgcctccacgccctccaccagcctg
cctatgagctccctgactgagccccatgcgtcctgccccgccctgcccgaggcccacagc
ctgtacgccaccctgctcctctctgactcagtcctcaacgtcttcaaagatcgcaacttc
gacagctgctgcatctgcgcctgcaacatgaacgtgaagggcgccgacgtgggcgtgtac
atccccgactccacgctcgaggaccagtaccgctgcatgtgcggcttcagcgccatcgtc
aaccgccggctggcccacggcacgggcctcttcctggaggacgagctggacatcttcggg
aggggctcggaggtgggccgggcagccgagaggaggctggcgctgtgccgcagagaccca
cctatgggagacccccgggccaagcgcccccaggactcctcccccgccccttcctctgtc
atggagctcctccaggagcagtgctcccagcccatctcctccctggcctccctacacctc
ccccctgcctgctcctgccacggccgccagggggcactgctccagagctggatgtctgac
aagcagtgggcggatggcagtgatgcgtgtgtggagtgttacaacgcgctggtacaggga
cagcagtatgtggataacccagccggggggaaagtagatccggctgttgtgaggagcagc
gctctacactcctggcctcacaccaacgtgttggacatcagtattctgtcgtcccaggac
gtggtgcgtatgctgctgtccctgcagcccttcctccaggacgccatccagaagaaacgt
acgggccggacctgggagaacatccagcatgtccagggtccactcacatggcaacagttc
cacaagatggccggccggggatcctacgggtcagaggagtcgcccgagccccttcccatc
cctaccctgttgctgggctactacgataactatgaccgtaacttcctggcgctgtcgccc
ctggcgctgcccttctgggagaagctgctgttggaaccatatgggggacagagggacgtg
gccttcctggtgctctgccccaactctgaaaccctgctggccggggcacaggccttcttc
caggagctcagcgctgtctacgagacgtgtcggttggggaaacacagacccctggcaaag
gtctccagagatggactggtgcgtgtgggggcagagacagaaactgagaccgataaggag
aaagagaaggagaggcatgaggaggagcagatagaccagtggttcacagggccctgggct
ggacagcaacacagcgacaacctcagaaaactcaaactctatgcgcgcacctgcaggaag
cagctaggtccacagttgtctgccctgtctttggacagcagtctgttgttaccccccaag
cctcagcctcctccagcccctacgccctcctcagcccagcctgccccctcctccagccag
cccccctatggtcctggggcccctgctgagggagaggcaacagcccccccagtggccctc
agctcagaaagcaacccaacccccacagcagcagcagcctcgctccagccaggtccagca
gagagcacccaaggagggtccactgaggtcaagaatacccccaatgccccaccaccacct
agccagccagagaaccctgagagtgtggcggagcgggagcgaatcggcatccccacgctg
gcggactcggccgatagccacgcccacccccctgccatcgtgatctacgtggtggacccc
ttcctgtgctcgggccgagcgagggatggaggagaggaggaggagggtgaggaggtggag
gcaggcagtgtgtggttactagggctgctgcgttgctacacagagatgctacagacattg
ccggagagcatgagaccagcactggtgttacaggtggtgccatgtcagtacctgctccag
ccagccagtggtgagagccctctgtacctgcagcacctgcgctccctggccttctcagcc
tactcccagtgcagacgcctcctaaccacacagacacacatcaagtctctgaccggcttt
ggccccgcctccaccctagaatctgtgctcaagagcccagagcaccccagccctctacag
ggctactctcccccgtacattctgggtcctacccgtgccaagcaaccggagccaggggag
gtgtgggcagagatccctcccaggtacaacgtgctgtttgtgggttactgcctgtcccac
gaccagcgctggatcctggtctcctgcaccgaccagcagggagagctactggagacctgc
atcatcaacatcgatgtgcccaacagagcgcggtggcccaaggtctcagccaggaagatg
ggactgcaaaagttatgggactggtgtgtcggcatcatccagatgacctcactgccatgg
aggatcgtgattggtcggctgggcagactaggacatggtgaactgaaagactggagcgct
ctcctgggggagcactctctccactccatcagtcgccagctgaaggaggcatgtcgtatg
tgtggcatctcctccgccgactccccctccatcctcagtgcctgcctggttgccatggag
ccccagggctccatcgtggtgatgccagacgcagtgacgatgggctcggtgtttggtcgc
agcacagccctcaacctgcagacgtcccagctgaacacccctcaagacgcttcctgtacc
cacatcctggtattccccacctccgccaccacacagctggctgccagctcctaccccaca
gaggataacgccgacgacatgttcgacctgcctttccctgacgagctggagaatgacata
ggacatgacattctcaacctgcacccctcccccaacacctcccctgtaccctcccctggc
tccccctctggcatggggggaagctcacacttccagcataacaggagtcagggagacagg
tttctgtccagggagaaccctccggaggagctgaagcagcaacctctagccctgggatac
tatgtctccactgcccaggccgacagcctgcctcactggttctgggcctcctgccctcag
gctcagaaccagtgtccactctttctcaaggcatctttacaccaccacatcgccattgcc
acagcccaatcagatgaacccaatcagacaagctcagacaagacgaccaagaggatacct
caccctctggactccaagaccacctctgacgtgctcaggtttgtgttggagcagtacaac
gccctctcgtggctgacgtgtaaccctgccacccaggaccgccgctcctgcctgcccgtt
cacctggctgtgcttacacagatgtacaatgccatactcaacatgctctag
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