Oncorhynchus tshawytscha (Chinook salmon): 112241996
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Entry
112241996 CDS
T05605
Name
(RefSeq) retinoic acid-induced protein 1 isoform X1
KO
K19749
retinoic acid-induced protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112241996
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
112241996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H_2
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
112241996
NCBI-ProteinID:
XP_042173680
LinkDB
All DBs
Position
Unknown
AA seq
2342 aa
AA seq
DB search
MQSFSRERSGFHGNQPCYQQEHHELSRLESYRQHPHHGQTRQVYEAHALATATGMPPAGP
GAGPGPGSGPIPGPKDCYSQQAYPGYPQGNGGGVGGGVGGGGGSTPHDKKAYSGGSQGPP
PTPQHMQAGGYSNHMGPGGYPAQYMSEGHLQQSKWDDPAQLAQYEQEMVGRMEPGPPGSS
QYLDQNMLAHSQSQCHQPHQASAPVYTSPHHQPHPANPGQSPLMYPQSHLHYPQHPPSPS
PSSSSYMEKCSPMPHCYKGYSMPPSSQYTRQMGSHSGLKQGGYRPPPQNSYSYQQTPSRG
GYEPQPPLQGIPTPQETHPKYQHFSQPQQNYCLSELSVRSPEQYYQTCSPASSHSPARSV
GRSPSYSSTPSPLMTNPESFQYSQPPMTPGAASSSSSSSAGLQDQGLLMPPRSHPSSSPN
VAHPTPQHSYTQGVSMKERFSEKLLANPSLWSLNALTSQVENISNNVQQLLLSEAMVANK
KGAKRSSIGSSGGSSSKKEEVYKGVPGGPEGQHGGGPMQDPYSTNQHQLVPMEMQEGGYS
SSSDEQLERGYYYCGQGRSPAQAPNNTHLGLDTASSCSMTSPDDMSTRSGDSVSGLQSVA
SRDNMTPDPRSQGGHEPRQTPMKIVGDERSPVSVTIPSPMKQESQSPPDIQRLGLPLKEN
FEELAWTEKIADYEDDGVKKTSDSESDLRGSDNVTDTSEKREKWPEDEKGPALYSKINKA
VTEGKSYCYDENMYHKIQNKYDQGKGDSADKSPSLSDSSHKGDLGQEMKSEAFKSESPTD
SESSVKTSPYISRGDLDQDQYLTEKEDSSENTSPTPRGEALDQRLSASEKRESREEEGED
EEGEEERNQKSISSPLSAEEREGEESESLPSTEKDLNNRTSPQEEPFGELCSRTEGQSLA
EPQPYSNTESAETERQAAQPDATAAAAESPESGSAICDTPPQSHSAMMVFSALSEIATPP
APSHTRDHIDHSDSNVLEPDSPQLPGKSILHSAPSWANTPPSPKKGDEDMEPGISCPSAV
TPSAKPEPVAPSAHPQAFGRKHGRGRRRLMHSGVEFRRQLSVEREGESAPSPPQKPCMPS
SKSALFSDQLDMSAHQDIITTSETPKLLVEGSRSRMCTRSFNAQDTPPKDPQPPERRKPG
RKPGSKPGPKPGPKSGLKPGPKPGPKQGSKPSLKPGPKPGLKPDSKPSPKPGLKPGPKPG
PKTVLKPGPKTGPKPGPKPGPKPTEGAPRGRPRGTGSKSKLAEQEGPIQPITGGPGRGQK
SLSINSQQGDGKQEVKAPGKDGKNMVLRSRKPPQDKLPKEKEKAQSEGILTQTLTGITKP
NAVSQNEERMSIEPAIPVFPNQTDTSITDTSVTDSSKPDTSVTDTSVTDVSVTDTSKPDT
SVTDTSKPDTSVTNTSVTDVSVTDTSKPDTSVTDTSVKDTSVTDTRVTDPSKTNTSITDT
SKPDTSVTDTSKPDTSKTDTSETDTIATDVSVTDTRVTDTSVSDPNVTETSVTDTSVTDT
SVTDTSIKDNSVTDTSVTDISIPVAPPEKPKEPAVAVPLETAPVPPLKRKPSPLPLEPPV
KKKRGPKPKPKPQQPQPETPHSDQANQPPLVKPKEMGVRGPKRRLKRGRHIKASLITVLT
KDNPPPTMADGDVVSEMPSIPSQCPTKTKYLPPRKGRGLKYEAMVQKINSGTGSKKHPPT
PQPESTEATVDEVTSKPVSLPVSEESEAPVAAVSAPDVSREELARDVGSSTGAQNTEQER
RVQQNTGEGVQPEPLPSGVPDAAAASGANKPTRTKRRKWAMVESTDATVVAMETGSLIIN
TPRLAKQRAIKNNHEMHLKQRRRKRKGGQPSEGPVADEEVETTTAEQQTETPTDTALTTT
PALPAGPGEITDSPQVIATEMIQPPPSKRGRKPSSSPSKKRGRAPGEQQSSKPLRVHKKP
GPKKGIKDAMEVIEAVVKAAGREARLKKKKWKKESPAVSEEKQPEPSLKQVLSKTPKSRI
KHSFCPYVRMDSSRDFTSLCTIVNRRDEELKMVLQKPWKKSPDKIKNPVTVAKAIPSSSA
MLQGPLVNKTLIDRCLTCCLCGKPANYRELGDLCGPYFPEDSIPRKILSARHIETPRENG
EKISSNSSIREPSSSTPTSEGDPGFKKEVSKKVDMETVTKQGSSSSGGSHHLQPHPHHWR
PRRAERAPAEGGSTHRPTLRDRFRRMQKLQGERRAAEATAGGQEGGNGGGGLLQRLQGEA
EAKEHWAHENCAIWTNGIIMVAGRLYGLKEAVHTSTETSCSKCQRVGASISCCWKGCPHK
YHYICAKEIGCMFQDDNFSLKCPKHETDRQGLCKIEHYPAPVSITYAVRQRDRQIGHPST
QT
NT seq
7029 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcgttcagcagagagaggagcggtttccatggcaaccagccctgctaccagcag
gagcaccatgaattatcacgcctggagagctaccgacaacacccccaccacggacagacc
aggcaggtctacgaggcgcatgcgctggccaccgctacagggatgcctccagcgggacca
ggagccgggcctggaccaggaagtggacccatacctggacctaaggactgttacagccag
caggcataccctggatacccccagggtaatggaggtggtgtgggtggtggtgtgggtggt
ggaggaggttcgacgcctcatgataagaaggcttacagcggggggagccaaggacctcct
cccactccccagcatatgcaggcgggtggctacagcaatcacatgggcccggggggatac
ccggcccagtatatgagtgagggccacctccagcagtctaagtgggacgacccagctcag
ctagctcagtacgagcaggagatggtaggcaggatggagccaggtccccctgggtcctcc
cagtatctggaccagaacatgctggctcactcccagagccagtgtcaccagccccaccag
gcctctgctccggtctacaccagcccacaccaccagccccatcccgcaaacccaggccag
tccccgttgatgtacccccagagccacctccactacccccaacatcccccgtccccctcg
ccatcctcctcctcctacatggagaagtgcagcccaatgccccactgttacaagggatat
agtatgccgcccagctcccagtacactaggcagatgggcagccacagtggtctgaagcag
gggggataccgcccgccaccccagaacagttacagctaccaacagactccctccaggggt
ggctacgagccccagcccccactacaaggcattcccactccccaggagacccaccccaaa
taccaacacttcagccagccccagcagaactactgtctgtccgagctgtccgtcagatcc
cctgagcagtactaccagacatgtagtcccgcctccagccactcccctgcacgctctgta
ggccgctcaccctcctacagctccaccccttcccctttgatgaccaatccagagagcttc
cagtacagccagccaccaatgaccccaggggcggcttcttcgtcctcctcttcctcagcg
ggtctgcaggaccagggcttgctgatgccgccgcgctcccacccgtcctcgtcccccaat
gtggcacacccaaccccgcagcacagctacacacagggggtttccatgaaggagcgcttc
tctgagaagctgcttgccaaccccagcctgtggagcctgaatgccctcacctctcaggtg
gagaacatctccaacaatgtgcagcagctgctgctctccgaggccatggtcgccaacaag
aagggggccaagcgcagcagcattgggagcagtggaggcagctcctccaagaaggaagag
gtttacaaaggagtgccaggaggccctgagggtcagcatggtgggggtcccatgcaggac
ccctacagcaccaaccagcaccagctcgtccccatggagatgcaggagggggggtactcc
agtagttctgacgagcagctggagagggggtactactactgcggccagggcaggagccca
gctcaggcccccaacaacacacacttgggcctggacacggcctcatcctgctccatgacc
tctccggatgacatgtccacccggtctggtgactctgtgtccggcctgcagagcgtggct
tccagggacaacatgacccctgaccccaggtcacaggggggacacgaaccccgacaaacc
cccatgaagatcgtgggggatgagaggtcccccgtgagtgtgacgattcccagccccatg
aagcaggagagccagtcccctccagacatccaacgtcttggcttgccactgaaggaaaac
tttgaggagttggcctggacagagaaaatagcagactacgaggatgatggcgtgaaaaag
acctccgacagcgagagtgacctcagaggcagcgataatgtcacagatacctctgagaag
cgggagaaatggccagaggacgagaaaggcccagcgctgtatagcaagatcaacaaagca
gtgaccgagggaaagagctactgctacgacgagaacatgtaccacaagatacaaaacaaa
tatgaccaaggcaaaggggactcggcggataagtccccaagcctctcagactccagccac
aagggagacctgggccaggagatgaaatcggaggccttcaaatccgaatctcccactgac
tctgagagctcagtgaagacatccccctatatttccaggggtgaccttgaccaagatcaa
tatttaacagagaaggaagacagctcggagaacacatcccctaccccgcggggcgaggct
ttggaccagaggctctctgcctcagagaagagagagagcagagaagaagagggggaggat
gaggagggggaggaggagagaaaccagaagtccatatcttctcctctgtctgctgaggag
agagagggagaagagagtgagagcctgccatcaactgagaaggacctcaacaatagaacg
agcccacaggaggagccttttggggaactgtgcagcagaacagaaggccagagcctggct
gagcctcagccttacagtaacacagagtctgcagagacagaacgccaagcagcacaaccg
gatgcaacagcagcagcagcagaatccccagaaagtgggtcagccatttgtgacactcca
ccccagtctcactcagccatgatggttttctcagctctcagcgagatagcaacacctcca
gctccgtctcacaccagggaccatattgatcacagcgattccaacgtgctggagcctgac
tcccctcagctgccggggaagtccatactgcactcagcgccctcctgggccaacacccca
ccatcgccaaagaaaggtgatgaggacatggagccaggcatcagctgcccaagcgctgtg
accccctcagccaagccagaacccgtggccccatctgcacacccgcaggctttcggccgg
aagcacggccgaggcaggaggagactgatgcactcaggtgtggaattcaggagacagctg
agtgtggagagagagggggagagtgccccctcgccaccgcagaaaccctgcatgccctcc
agcaagagtgctctgttctctgatcagctagacatgtccgctcaccaggacataatcaca
acgagcgagacacccaaactgcttgttgagggatcccgctccagaatgtgcactcgctca
ttcaacgcgcaggacactcctcctaaggatccccagccccctgaaagacggaaaccaggg
cggaaaccaggttcgaaaccaggcccaaaaccaggcccgaagtcagggttaaaaccaggg
cctaaaccaggaccaaaacaaggttcaaagccaagtctaaaaccaggaccaaaaccaggt
ttgaaacccgattcgaagcccagcccaaaaccaggtttaaaacctgggcctaaaccaggc
ccaaaaacagttctaaaaccagggcctaaaacgggtccaaaaccaggaccaaaacctggt
ccaaaaccaactgaaggagcaccccgtggtcgtcccaggggtacgggctctaagtcgaag
ttggcagaacaggaaggtcccattcaacccataacagggggtccaggaagaggccagaag
agcttgagcatcaacagtcagcaaggtgatgggaaacaggaagtgaaagctccaggcaag
gacggaaagaacatggtcctgagatccagaaagcccccccaggataagcttccaaaggaa
aaagagaaggcgcaatctgagggaatcctgactcaaaccctgacaggtataacaaagccc
aatgcagtgtcacaaaatgaggaacgtatgagcatagagccagccatccctgtctttcct
aaccagacagacacaagtataacagacaccagtgtaacagactccagtaaaccagacacc
agtgtaacagacaccagtgtaacagacgtcagtgtaacagacaccagtaaaccagacacc
agtgtaacagacactagtaaaccagacaccagtgtaacaaacaccagtgtaacagacgtc
agtgtaacagacaccagtaaaccagacaccagtgtaacagacaccagtgtaaaagacacc
agtgtaacagacaccagagtaacagaccccagtaaaaccaacaccagtataacagacacc
agtaaaccagacaccagtgtaacagacaccagtaaaccagacaccagtaaaaccgacacc
agtgaaaccgacaccattgcaacagacgtcagtgtaacagacaccagagtaacagacact
agtgtatcagatcccaatgtaacagagaccagtgtaacagacaccagtgtaacagacacc
agtgtaacagacaccagcataaaagacaacagtgtaacagataccagtgtaacagacatt
agtatacctgtcgctccacctgagaaacctaaagaaccggctgtagctgtacctcttgaa
actgcacctgtacctccactcaaaagaaaacccagtcctctgcctctagagcctccggtg
aagaaaaagcgaggtccaaaaccaaaaccaaaaccacaacagccccagcctgaaactccc
cattctgaccaggccaaccagcctccattagtcaaacccaaggagatgggtgtccgaggg
cccaagagaaggctaaagagaggcagacacatcaaggcctctctgatcactgtgctgacc
aaagataaccctcctcccacgatggctgacggtgatgtggttagtgaaatgcccagtatc
ccttctcagtgtcccactaaaaccaagtacctccccccgcgcaaaggcaggggtctgaaa
tacgaggccatggttcagaaaataaactcgggcaccggttcgaagaaacacccgccaaca
ccacagcccgagagcacagaggcgacagtagatgaagtgacgtcaaagcctgtgtcgctg
cccgtctcggaggagagcgaggccccagtggcggcggtgagcgcccctgatgtgtcacgg
gaggagttagcaagggacgtggggagctccacgggggcccagaacacagaacaggagaga
agggtgcagcagaacaccggggagggggtgcagccggagccactcccatcaggggtgcca
gacgctgcagcggcgagcggcgccaacaaacccaccaggaccaagaggaggaaatgggcc
atggtagagagcacggacgccacggtggtcgccatggagacggggagcctgatcatcaac
actccgcggctggccaagcagagggccatcaagaacaaccacgagatgcacctgaaacag
aggaggaggaagaggaaaggaggacagccttcagaggggcctgtggctgacgaggaggta
gagacaacaacagcagaacagcagacagagacacccactgacacagcgttaacaacaacg
cctgctctaccagccggcccaggtgagatcacagacagcccgcaggtgatcgccacagaa
atgatccagccgcctccctccaaacgagggaggaagccctcttcatccccctccaaaaag
agagggagagcaccaggtgaacagcagagcagcaaacctctgagggttcacaaaaaacct
ggtcctaaaaagggaatcaaagacgccatggaggtgattgaagcggtggtaaaggctgca
gggagggaggccagactcaagaagaagaaatggaaaaaggaaagccctgcagtgtcagag
gaaaagcagccagagccctctctcaaacaggtactgagtaagactcctaaaagcagaatc
aaacactccttctgtccatatgtgcgtatggacagctccagagacttcacctctctctgt
accatcgtcaacaggcgtgatgaagagctgaagatggtgcttcagaagccctggaaaaag
agcccggacaaaattaaaaacccagtcacagttgccaaggcgatacccagctcctcagct
atgctccaggggcccttggttaacaaaacgttaattgacaggtgtctaacgtgttgcctg
tgtggaaagccagcaaattaccgtgagctgggggatttgtgtgggccctacttcccagag
gatagcatcccccgcaaaatcctgtcagcaagacatatagaaaccccgagggaaaacgga
gagaaaataagctccaacagtagcatcagggaaccaagcagcagcaccccaacaagcgaa
ggagaccccggcttcaaaaaggaagttagtaaaaaggtggatatggagacagtcacaaag
cagggcagtagtagtagtggtgggagtcaccatcttcagccccacccccaccattggcgc
cccaggagggcagagagggcaccggcggagggcggaagcacgcaccggcccaccctacgg
gatcggttcaggaggatgcagaagctccagggggagaggagggctgcggaggccacagct
ggtggtcaggaagggggcaatggaggaggaggcctcctccagagactgcagggggaggct
gaggctaaggaacactgggcccatgagaactgtgctatctggaccaatgggatcatcatg
gtggcagggaggctgtacggcctgaaagaggctgttcacacctccacagaaacgagctgt
tccaagtgccagagagtgggcgcgtccatcagctgctgctggaaaggatgccctcacaaa
taccactacatctgcgccaaggagataggctgcatgttccaagacgacaacttttcactg
aaatgtccgaaacacgagactgacagacaagggctttgtaaaatagagcactacccagcc
ccagtgagcatcacctatgcagtaagacagagagacagacagataggacatccctccacc
caaacctga
DBGET
integrated database retrieval system
