Oncorhynchus tshawytscha (Chinook salmon): 112242127
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Entry
112242127 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: TBC1 domain family member 1-like
KO
K18341
TBC1 domain family member 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112242127
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112242127
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
112242127
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Rab associated proteins
112242127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
DUF3350
PID
DUF2594
Mad3_BUB1_I
Motif
Other DBs
NCBI-GeneID:
112242127
NCBI-ProteinID:
XP_042170736
LinkDB
All DBs
Position
Unknown
AA seq
1149 aa
AA seq
DB search
MTVYDLRPPSLLQVPEIISTLRQAGKSSARNDDLAAPKPAASSSEDCTPSASSAFGAATM
FAKRFEVLFCGRVTVAHKKAPPALIDECIEKFSQSVGAGGDPKPDSGGGLVDGLRRALAL
PTLTRNGGTGDGEVRGGGYGASSGGRPVVFKPDPSFPCLRALDENGLSPEPHTHTAGVQP
TSLQENRTMLFMVGRSQVFLVSPDTKTVAIEKSFREISFCSQGIHHVDHFGFICRETVEG
GSCTFVCYVFQCTDESLVDEIMLTLKQAFSVAALQQSVRTRSQQCDSCPMQQLHRLCERI
EGLLPSKAKLEFQKHLATLDNQEQAAVFESTVRASPKSDQEENELVMGSLRSLYEQKQRS
HQHTDHRPVPEAPAPVEVQSSSRQRLEQFKTRAKRSLTESLEGIWKGSSKARAQRENSEG
NISSSDSTLNSTEQYPSLEDPLPSSNPLRSHNSTGDLKHLDTSPLSVSPSFSSLSLSSRD
ARSQPHGFRRRASTFSHSPSYHDHAPSYPPHPSYTHTPQVPSGSTKPKLVRHYSVSTDTP
HQSNPLGGLRARLRSSSSVPNFLKLLAPVHESHPCDLDKRSDVAALSSPVAVCVVGDSPL
RRHSWRQQIFLRVATPQKNTDSNDRGDCSLDGRGVSVCGVGDGSLGVVPEERKKRGRAEL
RQLWRKAILQQTLLLRMERENNKIQASESKRQRLDYEEITPCLKDVTLVWESMLGTQARS
KVKFNTDTVHSAVEQGVPRQYRGEVWKFLSEQFVLRQPVPVRSPSDNRPYKELLKQLTSQ
QHAILIDLGPFRHHPYFQAQLGSGQLSLYNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMG
EEEAFNMLQFLMYHMGLRKQYRPDMMILQIQMYQLSRLLHDYHRDLYVHLEQHEIGPSLY
AAPWFLTAFASHFPLGFVARVFDMLFLQGSEVIFKVSLSLLGSHKPLILQHDSLESIVDF
IKTTLPNLGLVQMEKTINQVCEMDLSNQLQAYEVEYHVLQDELCDTPAHLNQSQRTAQLE
RTNQSLRQQNLDLLEELQVSQARVCRLEGQVEGLAQSEALLRERVFDLEEERNGLRNAVT
HLHTLLTALGIHTHTTHGDFNLDPHTHSAADTDGQRDGQGVDVPTREGPRLGQAMSSPLL
PHPLALPEH
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgacagtttacgatctacgtcctccctctctcctccaggtccctgagatcatcagtacg
ctgcgtcaggctgggaagagctcggcgcgcaacgatgacctggcagcgcccaaacccgcc
gcctcttcctcagaagactgtactccgtccgcgtcgtccgccttcggcgctgccaccatg
ttcgccaagaggtttgaggttctgttctgcggaagagtgaccgtcgctcacaagaaagcc
ccgcccgctttgattgacgagtgcatcgagaaattcagccaatcggtaggggccgggggc
gatcctaaacccgatagcggcggtggattggtggacgggctgcggagagctctggcctta
ccgacgctaacgcgaaatggaggaacgggggatggagaggtcaggggaggaggatacggt
gcctctagtggtgggaggccggtggtgttcaaaccagaccccagtttcccctgcctccgg
gccctggatgagaacggactgtcacctgaaccacacacacacaccgctggggtccagccc
accagtctacaggagaacaggaccatgctgttcatggtgggtcggtctcaggtcttcctg
gtcagtccagacactaagacggttgccatagagaagagcttcagagaaatatctttctgc
tcacagggtattcatcatgtggatcactttgggttcatctgtagagagacagtagaagga
gggagctgtacgttcgtctgctatgtcttccagtgtactgatgaatccctggtggatgag
atcatgttgactttaaagcaggcgttctctgtggccgccctgcagcagagtgtaaggacc
aggagccagcagtgtgacagttgccccatgcagcagctgcacaggctgtgtgagaggata
gaaggtctcctcccgtctaaagccaagctggagtttcagaaacatctggccacactggac
aaccaggaacaagctgcagtgttcgagagcactgtgagggccagtcctaagagtgaccag
gaggagaatgagctggtgatggggtctttgaggagtctgtacgaacagaaacagaggagt
catcaacacacagatcacagaccggtaccagaggctccagccccagtagaggtccagtcc
agtagcagacagagattagagcagtttaaaaccagagctaaacgctccctcacagagtca
ctggagggcatctggaagggaagtagcaaagccagggctcagagagagaacagtgaagga
aacatcagttcatctgactctacactgaactctactgaacagtacccctccctagaagac
cccctcccttcctccaatcctctgcgctctcacaactctacaggggacctgaaacatctg
gacacctctcctctctccgtctctccttccttctcatccctgtctctgtcctcccgggac
gcacggtcccagccgcatggcttcaggcggagagccagcaccttcagccactccccttcc
taccacgatcacgccccttcctaccctccacacccctcgtatacacacacaccccaggta
cccagcggctccaccaagcccaaactggtccggcactactctgtcagcaccgacactccg
caccagagcaatcctctgggaggtctgcgcgctcgtctccgctcctcctcctctgttccc
aacttcctcaaactcctcgctcctgtccacgagagccacccctgtgacttagacaagagg
agtgatgtagcagccctgtccagtccggtagcagtgtgtgtggtaggagacagtcctcta
cggagacactcctggagacaacagatcttcctacgtgtcgctacccctcagaaaaacact
gacagcaatgacaggggtgactgctccttggacggcaggggcgtgtctgtgtgcggggtt
ggagacggatcactgggcgtggttccggaggagaggaagaaacgtggccgagcagaactg
agacagctgtggaggaaggccatcctgcaacagacactactgctgaggatggagagagag
aacaacaagatacaggcgtcggagagtaagcgtcagcgtctggactatgaagagataact
ccctgtctgaaggacgtcacgctggtctgggagagcatgctgggaacacaggccaggtcg
aaggtcaagttcaacactgacactgtccactctgctgtggaacagggagttccgagacag
tacagaggagaggtgtggaagttcctgtcagagcagtttgtattgagacaaccggttcct
gtcagatctccatctgacaacaggccttataaagaactgctgaaacaactgacctcccaa
cagcacgccatcctcatagacctgggacctttccgacaccatccttatttccaggctcag
ttggggtctggtcagctgtctctctataatctcctgaaggcctactctctactggaccca
gaggtgggatactgtcagggtctcagcttcgtagcaggagtgttgttgttgcacatggga
gaggaggaggccttcaacatgctccagttcctcatgtatcatatggggcttcgcaagcag
tacagacctgacatgatgatactacagattcagatgtaccagctgtcccgtctcctccat
gactaccacagagacctgtacgtccatctggaacagcatgagataggaccgtctctctac
gctgctccctggttcctcacggccttcgcctcgcacttccctctgggcttcgtagccagg
gtgtttgacatgttgtttctccagggttcggaggtgatcttcaaggtgtcgctaagtctt
ctgggtagtcacaagcccttgatcctacagcacgacagtctggagtctatagtggacttc
atcaagactacattacctaacctgggactagtccagatggagaagaccatcaaccaggtg
tgtgagatggacctgtccaatcagctgcaggcatacgaggtggagtaccacgtcttacag
gacgagctgtgtgacacgcccgctcacctcaaccaatcacagcgcaccgcccagctggaa
cgcaccaatcagagcctccgacagcaaaacctcgacctgctggaggaactgcaggtgtcc
caggctcgtgtgtgtcgtctggaaggccaggtggaggggctggcccaatcagaggctctg
ctgagagaacgggtgttcgacctggaggaggagaggaacggactgcggaacgccgtcaca
cacctacacacactcctcaccgcgctgggaatacacacacacacaacgcacggggacttc
aacctggaccctcacacacactccgctgccgacacagatggacagagagatggacagggt
gtggacgtccccaccagagaggggcccagactggggcaagcgatgtcctcccctctcctc
cctcatccactggctctaccagaacattga
DBGET
integrated database retrieval system
