Oncorhynchus tshawytscha (Chinook salmon): 112242268
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Entry
112242268 CDS
T05605
Symbol
col9a1b
Name
(RefSeq) collagen, type IX, alpha 1b isoform X1
KO
K08131
collagen type IX alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112242268 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112242268 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
112242268 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
otw00535
]
112242268 (col9a1b)
Proteoglycans [BR:
otw00535
]
Extracellular matrix (ECM) proteoglycans
Others
112242268 (col9a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
112242268
NCBI-ProteinID:
XP_042173746
LinkDB
All DBs
Position
Unknown
AA seq
751 aa
AA seq
DB search
MDTRGLRYGGLSEHTPERYSQPGWIHVDCVMVDSQNTPQRGIVNLDGYTWIALWWTLRTH
PREFELQSMHIDCDVGRPQTCNDLPARTSVDEIVLQRASGPVGPPGPAGVPGIDGVAGER
GDDGEDGPAGPDGDAGKLGSAGLPGVPGADGLTGPTGDEGPDGPLGQKGEPGKPGPRGLA
GVGDDGPPGPPGPGGLPGDLGKGGPPGAMGVRGPTGPGGSVGPRGAAGMQDLSAELCPGA
CPPGTPGHPGLPGMKGHKGVKGEGGEPGKQGHKGEEGDQGTTGDLGSQGPTGPQGIRGST
GMMGPKGGLGARGHDGDPGPQGVEGATGDQGQRGVMGEFGPKGDEGSQGGRGITGLPGPK
GKGGLSGVDGREGIPGLPGGKGTIGKAGSPGEVGLQGLPGLPGSPGSKGTGGEKGSSGEA
GLLGTIGSAGKTGEQGKAGGLGPIGPIGGPGDSGVQGPAGPPGKPGARGPKGDLGLPGVP
GPPGLPGVKGERGEAGEGGPKGEQGGQGSEGTSGDKGDVGDQGEAGPKGVVGNPGEPGNR
GPEGSRGQPGIEGPAGTSGPRGMQGNRGAPGIRGSQGPAGKEPSDQHIRQVCMRVMQEQL
AQLAASLRRPESGAAGLPGKPGPPGPAGPPGDSGFPGQAGARGLPGLKGPPGLLGLKGPK
GELGDRGDRGPTVRGAKGQPGPPGLPGEPGKPGYGQEGRDGERGPPGVPGQAGVPGPPGN
AGPNGYCDPSSCNLRPGDIDTSIKGPEGTRN
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atggatacacgtggattgcgttatggtggactctcagaacacaccccagagaggtatagt
caacctggatggatacacgtggattgcgttatggtggactctcagaacacaccccagaga
ggtatagtcaacctggatggatacacgtggattgcgttatggtggactctcagaacacac
cccagagagtttgaactccaatcgatgcacattgattgtgatgtggggcgaccacagacc
tgcaatgacctaccagccaggacgtcggttgatgaaatagtacttcagagggcctcgggc
cccgtcggccctccaggacctgcaggtgtcccaggaattgatggtgtcgctggtgagagg
ggagacgacggagaggatggccctgctggtcctgatggagatgcaggtaaactaggctca
gccgggttgccaggtgtgcccggggctgatggtttgactggtcctactggagacgaaggt
cccgatggtccccttggacagaaaggtgaacccgggaaaccaggacctcgtggactagct
ggcgttggagacgatggaccccctggacccccggggccaggaggacttccaggtgatttg
ggaaaaggtggaccccctggtgctatgggagtgagaggaccaacaggacctggtggatca
gtagggccgagaggtgcagcagggatgcaggatttgagtgccgagctgtgccctggtgcc
tgtccacctgggacacctggtcatcccggcctccctggcatgaagggtcacaaaggagta
aaaggggaaggaggagagcctgggaaacaagggcacaagggtgaagagggtgaccaggga
accacaggggacctcggatcccagggcccaacgggtcctcagggaatcagaggctccact
ggaatgatggggcccaaaggtggactgggagcacgaggacatgatggagatccaggtccc
cagggtgttgaaggagccactggtgaccaaggccagaggggcgtgatgggcgagtttggt
cctaaaggtgatgagggatctcaaggtggaagaggaatcacaggtcttcctgggcccaag
ggaaagggtggtttgtcaggagtggatggccgtgaaggtattcctggattgccaggtgga
aagggcaccattggcaaggctgggtctccaggggaggtggggcttcagggacttcctgga
ttacctggttctcctggctctaaaggaactggtggagagaagggtagctctggagaggca
ggtcttcttggaacaataggatctgctggtaaaacaggagagcaaggcaaagcaggaggt
ctaggacccattggacccattggtggaccgggagacagcggagtacaaggaccagccggt
ccaccgggcaaaccaggggccaggggacctaaaggggatcttggtcttcctggtgttccc
ggacccccaggcctccccggagtgaagggagagaggggagaagctggcgagggaggacct
aaaggggagcaggggggacaaggttctgagggaacctctggagacaaaggagatgttggt
gaccaaggggaagctggacccaaaggagtggttggaaacccaggagagcctggtaacaga
gggccagagggtagcagagggcagcctggcatcgagggcccagctggtacttctggacca
cgtggcatgcagggcaacaggggcgcaccaggaatcagggggtcacagggaccggcgggt
aaagaaccaagcgatcaacacatcagacaagtctgcatgagagttatgcaagagcaacta
gcccagttggctgccagtctaaggaggccggagtctggagcagcgggcctacctggtaag
ccagggcctcctggtcctgccggacccccaggggacagtggcttccctgggcaggctggc
gcaagaggactacctggcctcaaaggacctccaggactcctaggactcaaaggaccaaaa
ggtgaattgggcgacagaggagaccgaggtcccacggtgcgaggggccaagggccagcca
ggacctcccggtctaccaggtgagcccggaaagcctggttacggccaggagggacgtgac
ggtgagagaggacctccaggtgttcctggccaggctggtgtacctgggcctcctggtaat
gctggtcccaacggctactgcgacccatcgtcctgcaacctcagaccgggggacattgac
accagcatcaaaggcccggagggaactagaaactag
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