Oncorhynchus tshawytscha (Chinook salmon): 112242282
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Entry
112242282 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: huntingtin
KO
K04533
huntingtin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112242282
04131 Membrane trafficking [BR:
otw04131
]
112242282
03029 Mitochondrial biogenesis [BR:
otw03029
]
112242282
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
112242282
Membrane trafficking [BR:
otw04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
112242282
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
112242282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
Motif
Other DBs
NCBI-GeneID:
112242282
NCBI-ProteinID:
XP_042170471
LinkDB
All DBs
Position
Unknown
AA seq
3034 aa
AA seq
DB search
MATMDKLMKAFESLKSFQQQQQGPPTAEETAQKQKKELATTKKDRVAHCLTICENIIAQS
LRVPEQNQALMDSNLPRLQLELYKEIKKNGASRSLRAALWRFAELAHLVRPQKCRPYLVN
LLPCLTRITKRQEETVQETLSAAVPKIMTALGHFANDGEVKVLLKSFVANLKSTSPTIRR
TAASSAASVCQHSRRASYFYTWLLNVLLGLLVPVDEEHPNHLVLGVLLTLRYLMPQLQQQ
DRTTSLKGSFGVMRKEADLQPTPEQLLQVYELTLHYSQHGDHNVVTASLELMQQMFRTPP
PELLHMLITPGSVPHASVFRRDVERRAHSGSILEFIGKMLSGEEEGLEDDPERAEVTTGA
FTASVAGADATAQVVDIITQQPRSSQHALQPGDSVDLGGASSEHGTTALGTSGGEGGAGT
PESPNDNAADEDMLSHSSSGANVTPETADYATPENAEMPDGPLLDPLGDPSLPPSADSSQ
TTTEGPDSAATPSDVAELVLDTSESLYSGMQIGTLQDEEEEGAVPSSHPEPFSQSALALS
RPHLLEGRGHNRQASDSSVDHFIPKEEPAETTELENKPSRIKGPIGHYTDQGAEPLVHCV
RLLSASFLLTGQKNGLVSDKEVRVSVKVLAVSCIGAAAALHPEVFFNSLYLEPLDGETQQ
EQQYISDVLCLVAHGDPQVRGAAGVLCGAVIHSALTKTRYNIHAWMASVHTSTGNPLSLV
DLVPVLQNTLKDESSVTCKMACSAVRHCIMTLCSSTLSELGLHLLVDLLTLKDCSYWLVR
TELLDTLAEIDFRLVNFLEKRTENLHKGEHHYTGLLRLQERVLNGVVIHLLGDEDPRVRH
IAAATVSRLVSVLFYECDQGQADPVVAIARDQSSVYLQLLMHETLPPSHFTVSTITRTYR
GYNLSQGVSDVTVENNLSRVVSAVSHALTSSTSRALTFGCCEALHLLTTTYPACTWSTGW
HCGYVSSTVTHPNRSNLNRSRARSHSLSQPGSGPLEEGKRSLTVGMANMMMSLLSSAWFP
LDLSAHQDALLLAGNLLAATAPQCMCSPWAGEEEGGPVPGKTEEPWAAVGERPLVVLVEQ
LFSHILKILNICAHVLDDTPPGPAVKATLPSLANAPSLSPIRRKGKEVAEPSTIPMSPKK
GSETNTGRPADSSGSTANVNKSTTLGSFYHLPTYLKLYDVLKATHTNYKVTLDLHSTNEK
FGGFLRSTLDVLSQLLEMATLHDIGKCVEEILSYLKLCFSREPLMATVCVQQLLKTLFGT
NLASQYEGAQGGPSRSQGKALRLGSSSLRPGLYHYCFMAPYTHFTQALADASLRNMVQAE
QEQDASGWFDVMQKVSNQLRSSITNVTKQRGDKNAIHNHIRLFEPLVIKALKLYTTSTSV
ALQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRDSEAIVPNIFFFLV
LLSYERYHSKQIISIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGSNKADAGK
ELDTQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMIGKQQ
MHLDSPEALGVLNTLFETVAPSSLRPVDMLLKGMFTTPATMANVNTVQLWVSGVLAVLRV
LISQSTEDIVLSRVHELSLSPLLLSCPTIRRLRDDSSLSSPPPLATLATVAPDNQEANGE
RVPPEETFARFLLQLVGVMLDDISTRQVKVDMTEQQHTFYCQQLGTLLMCLIHIFKSGMF
RRITAAATRLLKGEAVLGAGPGVSGVFYPLEGLNAMVGCLVTTHPSLVLLWCQVLLIINY
TNYSWWTEVHQTPRRQSLSCTKLLSPHSSGGVEEERPEARLAMCNREIVRRGGLILFCDY
VCQNLHDSEHLTWLIVNHVRDLIDLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCDNLS
TPTMLKKTLQCLEGIHLSQSGSLLMLYVDKLLNTPFRVLARMVDTLACRRVEMLLAETLQ
NSLVQLPVEELDRIQEYLQISGLAQRHQRFYSLLDRFRATVAEDTSSPSPPVTSHPLDGE
PPPAPELVTADKEWYVALVMSQCCLRGDGSFLETTELLTKLPPDDLSTIMTCKDFNLSLL
CPCLSLGVQRLTRGQGSLLLETALAVTLDHLSGVTQLLPVPHRSFLPPAKPDPAEPYWDN
LAIVYAGAGLYPRVMSLCRALSQYLLCVGQLPSPLQIPEDKQHLITTFTTMATELVVWRV
LQDSVPLSVDLQGALSCLCLALQQPCVWNTLSTASYKTHTCSVIHCLRLLITAVAVGPGD
HLLHPGRKRTTGPDGDSDQVHSPNTDNVCERRSCEIMAELVEGLQSVLSLGHHRNSGIPA
FLTPMLXNIIISLSRLPLVNSYTRVPLVWKLGWSPRXGGEFGTTLPEIPVEFLQEKDVFR
EFLYRINTLGWSSRTQFEETWATLLGVLVTQPISMDQEEEREQEEDLERTQLNVLAVQAI
TSLVLSSMTLPTAGNPTVSCLEQQPRNKTLKVLDTRFGRKLSVIRGAVEREIQAMVSKRD
NVHTHHPYHTWDPVPSLSAVSPAGTLISHEKLLLQINTEREMGNMDYKLGQVSIHSVWLG
NNITPLREEEWGEDEEDETDTPAPASLPTSPINSRKHRAGVDIHSCSQFLLELYSQWLLP
GSPSNRRTPVVLISEVVRSLLAVSDLFTERNQFDMMFTTLMELQKSHPAEDEIMNQYLVP
ALCKAAAVLGMDKATSEPVCRVVELTLHSTHLPSRMGALHGLLYVLECDLLDDTVKQLIP
AVSDYILSNLRAIAHCVNLHNQQHVLVMCAVAFYMMENYPLDVGAEFTAGVIQMCGVMVS
ASEDSTPSVIYHCVLRGLERLLLSEQLSRMDGEALVKLSVDRVNMPSPHRAMSALGLMLT
CMYTAVRTSASTAESALGSEVMGSEVRGQGSEVTSGPVAFSSGKEKASPGRPAGAVDPQA
PDSESVIIAMERVSVLFDRVRKGLPSEARVVARILPQFLDLSFPPSLLPLSPLPPSSLPL
LPQVFQTLHATGQSSMVTDWVLLSLSNFTQRTPV
NT seq
9102 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggataaattaatgaaggcctttgaatctctcaagtctttccaacaacaa
caacagggaccgccgacggccgaggagacggctcagaaacagaagaaagagctggccacc
accaaaaaggacagagtggcccactgcctgaccatatgtgagaacatcatagcccagtct
ctgagggtgcctgaacagaatcaggcgctgatggactccaacctgcccagactgcagctg
gagctctacaaagaaattaaaaagaacggtgcctctcggagcctgagggctgctctctgg
aggttcgctgagctagcacacctcgtcagaccacagaaatgcagaccgtacctggtgaac
ctcctcccctgtctgaccaggatcacgaagagacaggaggagactgtccaggagaccctg
tcggctgccgtgcctaagatcatgactgctctgggacacttcgctaacgacggagaagtc
aaggtgttgctaaagtcgtttgtggccaacctgaagtccacttctcctacgatccgccgg
acggccgccagctcagcggctagtgtctgtcaacactcgagacgggcctcctacttctac
acctggctgctcaacgtcctgctgggtctgttggtccctgtcgatgaggaacatcctaac
cacctggtcctgggggtgttgttaacccttcgctacctgatgcctcaactacagcaacag
gacaggaccaccagcctgaaaggaagtttcggagtcatgaggaaggaggcagacttacag
cccacgcctgaacagctactgcaagtctatgagttgactctccactacagccagcatggc
gaccacaacgtggtgacggcctctctggaactgatgcagcagatgttccggactcctccc
ccggagctactgcacatgctcattacgcccggcagtgttccgcacgccagcgtgttccga
cgggacgtggagagacgcgcccactccggcagcatcctggagttcattggcaagatgctg
tcgggggaggaggaggggttggaggacgaccctgagagggcagaggtcaccaccggggcc
tttacagcctctgtcgcgggcgccgacgccaccgcccaggtggtcgacatcattacccag
cagccccgctcctcacagcatgctctgcagcccggcgactccgtggacctcggtggcgcc
tcctcggaacacggaacgactgccctcgggacgtccggcggcgagggaggggcggggact
cccgagtcgcccaatgacaacgcagcggacgaggacatgctcagccacagctccagcggg
gctaacgttaccccggaaacggccgactacgccacaccggagaacgcggagatgcccgac
gggcccctgctggaccccctgggagacccctcgctgcccccgagcgccgactcatcacag
accaccacagaggggccggactcggccgccacaccttcagacgttgctgaactcgtgttg
gacaccagtgagagtctgtattcagggatgcagattggaactttacaggatgaggaagaa
gagggagccgtaccttcatcacaccctgaacccttctcccagtccgcactggctctgagt
agaccccacctcctagagggcagaggtcacaacagacaggcgtcagacagcagtgtggat
cacttcataccaaaggaggaaccagcggagaccacagagctggagaacaagccatcgagg
ataaagggtccgattggccactacacagaccaaggggcggagcctctggttcactgtgtg
cgactcctctctgcctccttcctgctgactggacagaagaatgggctggtctctgataaa
gaggtccgtgtcagtgtgaaggttctagcagtcagctgtatcggagcagcagctgccctt
catcctgaagtcttcttcaactctctgtacctggaaccactggacggagagacacagcag
gagcagcagtatatcagtgatgtgttgtgtctggttgctcatggagaccctcaggtcaga
ggtgctgcaggggtgttgtgtggcgccgtgatccactctgctctcaccaagacacgttac
aacatacacgcctggatggccagcgttcacacctctacaggtaacccattgtccctggtg
gatctagtacctgtactacagaacactctaaaggacgagtcctctgtcacctgtaagatg
gcctgctctgcagtcaggcattgcatcatgactctttgtagcagtactctgagtgagttg
ggtctgcatctcctggttgacctgctgaccttaaaggactgttcctattggctggtcagg
acggaactcctggacactctggcagagatagatttccggttggtgaacttcctggagaag
agaacagagaatttacacaaaggagagcatcactacactgggttgctaaggttacaggag
agagtgttgaatggcgttgtgattcatttgttgggagacgaagaccctcgagtacgacac
atagccgctgctactgtcagcaggctggtcagtgtgttgttctatgagtgtgaccagggt
caggctgacccggtggtggctatagccagagaccagagctctgtgtatctacagttactg
atgcatgagacgctaccgccttcacactttactgtctctaccatcaccaggacgtatcgt
ggttataacctgtctcagggagtgtcagacgtcactgtggagaataacttgtcaagagtc
gtctctgccgtgtcccacgctctcacctcctctacgtcccgggccctcactttcggctgc
tgtgaggcgctgcatcttctgaccaccacctacccagcatgcacctggagtacgggctgg
cactgtggctacgtcagctccaccgtcacacaccccaaccgatccaacctcaaccgctcc
cgggcacgctcacacagcctctcccagcccggctcaggccctttagaggaagggaagagg
agtctaacagtagggatggctaacatgatgatgtctctactgtcctctgcctggtttcct
ctggacctctctgctcaccaagatgctctgctgctggccgggaacctgctcgctgcgacg
gctccacagtgtatgtgtagtccctgggctggggaggaggagggagggccggtccccggt
aagacagaggagccctgggcagcggtgggggagcgccccctggtggtcctggtggaacaa
ctcttctctcacatcctcaagatactcaacatctgtgcccacgtgctggacgacacgccg
cccggacccgccgtcaaggccaccctgccgtccctagccaacgctccctccctcagcccc
atcagaaggaaaggcaaggaggtagcagagccaagcaccattcccatgagccctaagaaa
ggcagcgagaccaacactggcaggccagcggacagctcggggtccacggctaacgtcaac
aagtccacaaccctggggagcttctatcatctacccacctacctcaaactgtacgacgtc
ctcaaagctacacacaccaactataaggttacgttggacctccacagcaccaacgagaag
ttcggagggttcctgcgttctacgttagacgttctgtctcagctgctagagatggccacg
ctacacgacatcggaaagtgtgtggaagagatcctcagctacctgaaactctgcttctcc
agagaacctctgatggccacggtctgtgttcaacagttattgaagacgttgtttggtacc
aatctagcctcccagtacgagggggcccagggcggtcctagtcgatcccaggggaaggct
ctccgtctgggctcgtccagcctgagacctggcctctatcactactgcttcatggctccc
tacacacacttcactcaggccctggccgacgccagcctcaggaacatggtgcaggctgag
caggagcaggacgcgtcagggtggtttgatgtaatgcagaaggtgtccaaccagctgaga
tccagtatcaccaacgtgaccaaacagagaggagacaagaatgcgatccacaaccacatt
cgtctgtttgaacctctggtgatcaaggctctgaaactgtacaccacctccacctctgta
gcgctgcagagacaggtcctagacctgctggcgcagctggtacagctacgagtcaactac
tgtctgctggactcggaccaggtgttcataggttttgtgctgaagcagtttgagtacatt
gaggtgggacagttcagagattcggaggcgatcgtccccaacatattcttcttcctggtt
ctgttgtcgtacgagcggtaccactccaaacagatcatcagcatcccaaagatcattcaa
ctgtgtgatggcatcatggctagtgggaggaaggctgtcacacatgccatcccagcactg
cagcctatagtccatgacctgtttgttctgagaggctccaacaaggctgatgctgggaag
gagttggacacccagaaagaggtggtggtctccatgctgctgagactcatacagtaccac
caggtgctggagatgttcatcctggtcctccagcagtgtcacaaggagaacgaggacaag
tggaagagactgtccagacagatcgctgacatcatactgcccatgataggaaaacaacag
atgcacctggactcccctgaggctctgggagtgttgaacactctgtttgagacggtcgct
ccctcctctctccgcccggtagatatgctgctgaagggaatgttcactacacctgctacc
atggctaatgtcaacacagttcagctgtgggtgtcaggtgtcctggctgtcctccgagtc
ctcatctctcagtccactgaagacatagtcctctctcgtgtccacgagctctccctctct
cctctcctcctctcctgtcccaccatccgacgtctccgcgacgacagcagcctctcgtcg
ccaccgcctctggcgaccctggcaactgtcgcccccgacaaccaggaggccaacggagag
cgggtgccgccggaggagacgtttgccaggttcctactccagctagtaggagtgatgcta
gatgacatctcgaccagacaggtgaaggttgacatgacagaacagcaacacacgttctac
tgtcaacagctggggactctgttaatgtgtctcatacacatcttcaagagtggcatgttc
cgtaggatcacagcagcagccacccgtctcctgaagggtgaggctgttctgggtgcaggt
ccaggggtcagtggtgtcttctaccccctagagggtcttaatgccatggtgggctgcctg
gtgaccacacacccctctctggttctactctggtgccaagtcctcctcatcatcaactac
accaactacagctggtggacagaggtacaccagacacccaggagacagagtctgtcctgt
accaagctgctgagccctcattcatcaggaggggtggaggaggagagaccagaggccagg
ctggccatgtgtaacagagagatcgtacgcaggggaggactcattctcttctgtgactac
gtgtgtcagaacctgcacgactcggagcacctgacctggctgatcgtcaaccacgtccgt
gacctcatcgacctttcccatgagcctccggtgcaggacttcatcagtgccgtgcatcgc
aactcggccgcctccggactgttcatacaggctatacagtcacgctgtgacaacctctct
actcccaccatgttgaagaagactctccagtgtctagaagggatccacctgtcccagtct
ggttctctgttgatgctctacgtggacaagttactgaacactcctttcagagtcctggct
cgtatggttgatactctggcctgcaggagggtggaaatgctgctggctgaaacactacag
aacagtttagtccagctgcctgtggaggaactggacagaatccaggaatatcttcagatc
agtggactagctcaacggcaccagaggttctactccctgctggacaggttccgagccacc
gttgccgaggacaccagcagcccctctcctcctgtgacatcacaccccctggatggggaa
ccgccacctgcccctgaactagtcacggctgacaaggagtggtatgttgccttggtgatg
tcccagtgctgtctccgtggtgacgggtcgttcctggagacaacggaactcctgaccaaa
ctacctcctgacgacctctctaccatcatgacctgcaaggacttcaacctgtctctcctc
tgtccgtgtctgagtctgggggttcagaggttaacccggggtcaggggtcgttgttattg
gagacggccctggccgtgaccctggatcatctgagcggggtcacacagctacttcctgtt
ccacaccgttccttcctgccgccggccaaacctgacccggccgaaccctactgggacaac
ttggctatcgtctatgctggagcaggactctacccgcgggtgatgtctctgtgtagagcg
ctgtctcagtatctgctgtgtgtgggtcagcttccttcccctctgcaaatccctgaagac
aaacaacatctcatcaccaccttcaccaccatggctaccgagttggtggtctggcgtgtt
ctccaggacagtgttcctctgagtgttgacctgcagggggctctgtcctgtctgtgtctg
gccctgcaacagccctgtgtctggaacacactgtctacagcctcgtacaaaacacacacc
tgctctgtcatacactgtctacgactcctcatcactgcagtggcagtaggtccaggtgac
catctcttacatccagggaggaagagaaccaccgggccagacggtgattcagaccaggtc
cactctccaaacactgacaacgtgtgtgagcgacggtcgtgtgagatcatggctgagttg
gtggaaggtctccagagcgttctgtctctgggtcaccatagaaacagcggaatcccagcc
ttcctcacgccgatgctcnnaaacatcatcatcagtctgtccagactaccgctggtcaac
agctacactagagtccccctggtgtggaagctgggctggtcccctcggnccgggggagag
ttcggcaccacccttcccgagatccctgtagagttcctgcaggagaaggacgtgttcagg
gagttcctctatcgcatcaacacactgggctggagcagtaggacccagtttgaagagaca
tgggccacactgctgggagttctggtcactcaacccatctctatggaccaggaggaggag
agagaacaggaggaggacttggagcgtacccagttgaatgtgttagcggtccaggccatc
acgtctctggttctgagttccatgactctccctactgccggaaaccctactgtctcctgt
ctggaacaacagccgagaaacaagacccttaaagtcctggacacacggtttggcaggaag
ttgtcagtgatcagaggagccgtggagagagagatccaggccatggtgtcgaagagagac
aacgtacacacacaccacccctaccacacctgggaccctgtcccctccctgtctgctgtc
tcaccagcaggtacactgatcagccatgagaaactcctgctgcagatcaacacagagaga
gagatgggcaacatggactacaaactgggacaggtgtccatccattctgtgtggctgggg
aacaacattacccctctgagagaggaagagtggggtgaggatgaggaagatgagactgat
actccggcccccgcctctcttcctacctctccgatcaactccaggaagcatcgtgcaggt
gtagacatccactcctgttctcagttcctattggagctctacagccagtggctcctcccc
ggttcccctagcaacagacgcacccctgttgtgctcatcagcgaggttgtccgatcgttg
ttggcggtctctgacctgttcacggagcgtaaccagtttgacatgatgttcaccaccctg
atggagctgcagaagagtcatcctgctgaagatgagataatgaaccagtacctggtacca
gctctctgcaaggctgccgctgtcctgggcatggacaaggcgacctctgaacctgtgtgt
cgggtggtggagctgaccctgcacagcacccacctccccagccgtatgggagcgctgcac
ggcctgctgtacgtcctggagtgtgacctgctggacgacacggtgaaacagctgatacct
gccgtctctgactacatactgagtaacctacgggccatagcacactgtgtgaacctgcac
aatcagcagcatgtcttggtgatgtgtgctgtggccttttacatgatggagaactaccct
ctggatgtaggagccgagtttactgctggggttatacagatgtgtggtgtgatggtatca
gccagtgaagactccaccccctcagtgatctaccactgtgtgttgcgtgggttggagcgc
ctcctgctgtcggagcagctgtctcgtatggacggagaggcactggttaaactgagtgtc
gacagggttaacatgccaagccctcacagagccatgtctgcactgggactcatgctcacc
tgcatgtacacagcggtgcgtacctcagcgtcgacagcagagtcagcgttggggtcagag
gtgatggggtcagaggttagaggtcaggggtcagaggttacctcgggtcctgttgctttc
tcctcaggcaaggagaaggccagccctggtcgcccggccggcgctgtcgaccctcaggcc
cccgacagcgagtctgtcatcattgccatggagagggtctctgtgctcttcgacagggtc
cgtaagggtttacccagcgaggcacgggtggtggccaggattcttcctcagttcctggac
ctctcttttcctccctctctcctccccctctctcccctccctccctcctccctccctctc
ctccctcaggtgttccagaccctccatgctacaggccagtccagtatggtgacagactgg
gtgttactgtctctgtctaacttcacccagagaaccccagtt
DBGET
integrated database retrieval system
