Oncorhynchus tshawytscha (Chinook salmon): 112242335
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Entry
112242335 CDS
T05605
Name
(RefSeq) POU domain, class 2, transcription factor 1 isoform X1
KO
K09364
POU domain transcription factor, class 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
112242335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112242335
03021 Transcription machinery [BR:
otw03021
]
112242335
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
112242335
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
Octamer transcription factors
112242335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POU2F1_C
Pou
Homeodomain
Homeobox_KN
DUF3839
T6_Ig_like
Motif
Other DBs
NCBI-GeneID:
112242335
NCBI-ProteinID:
XP_042175827
LinkDB
All DBs
Position
LG03:complement(68932382..68969309)
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AA seq
766 aa
AA seq
DB search
MLENKGAPEVDSRMSNASETSKCGMESQSGDGNTEIQTNGLDFQRQTLQTTSAITNAHTQ
ALLQQYISNTHPPSCFSHSKSEDSGAIPTSVQQGVLPQAQLMLAGGQIAGLTLSPAQQQL
LLQQAQAQLLAAAMQQQSASQQSSTTGASISASAATPITQLPLSQPIQITSIPSGSTHLP
GQLSQLGYPYEMATFSSYLPQLQQLQQQNLTMPQFVLVQPGHHIATQLQPGQFIISQSPQ
GQQSLLQAQSLLTQLPQSQANLLQTHPSITLSTQPATPTRTIAATPIQPLSHSQTSPPKR
LATPSLEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALN
LSFKNMCKLKPLLEKWLNDAVYADNLSSDQALSSPSALGSPGLGMEGLNRRRKKRTSIET
NIRLALEKRFLEQNQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRINPPSGGYSNT
GTGSSPIKTIFTPTTPLVASTASLVTSNTPTTLTVNPVMPLNSTSVSGLTFTGTTIGATT
NTASVISTAPMVTAVTSSSSLSPSPTALQATAAETGGTQEHTVVTQAPSSLATTLGTGQV
MVAGLGLSAALQGAAQLPTSSSFAAMAGLNQGLMASSQFTPGGALLSLAPGGLGGALNPA
MLSNSTLATIQGLWSALASGGALPITSLDGSGNLLFANTSAGSTPNLMQPLFLNPQNLSL
LTTNPVNLVSAGAAGGGALQVSADHQVTTATVPVPASTITTASRAQ
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaaaataaaggggcaccagaagtggattctagaatgagtaatgcgtcagaaacg
agtaaatgtggaatggagagtcagagtggggacggcaacacagaaatccaaacgaatgga
ctggactttcagaggcagacgcttcagaccacaagcgcaatcaccaacgctcacacacag
gctctcctccaacagtacatttcaaacacccaccccccttcctgcttttctcattccaag
tcagaagactcgggtgcaattccgacctccgtccagcagggggtgctgcctcaggcccag
ctcatgctggctgggggacagatagctggattgaccctgtctccagcgcagcagcagttg
ttgttgcaacaggcccaggcccagctcctagcagcagccatgcagcagcagtcagccagc
cagcagagcagcactacgggggccagcatctctgcctctgcagccacccctatcacacaa
ctgcccctgtcccagcccatccagatcacctctattccctctggttctacccatcttcca
ggccagctaagccagctgggatacccctatgagatggcgaccttcagcagttacctacct
cagttacaacagctgcagcagcagaacctgaccatgccccagtttgtcctggttcagcct
ggccaccacatcgctacccagctgcagcctggccagttcatcatctcacagtcaccacag
ggccagcagagtctcctgcaagcccagagtcttctaactcaactacctcaaagccaagcc
aacctcctgcagactcatcccagcatcacgctctccacacagccagcgactccaacccgc
acgatagcagccactcccatccagcctctgtcccacagccagacctcgccccctaaacgc
ctggccacgcccagtctggaggagcccagtgacctggaggagctggaacagtttgccaag
accttcaaacagagacgcatcaaactgggcttcacacagggagatgttggcctggctatg
ggcaagctgtacggtaacgacttcagccagaccaccatctcccgcttcgaggccttgaac
ctgagctttaagaacatgtgcaagctgaagccactgctggagaagtggctcaacgatgca
gtttatgcagacaatctgtcgtctgaccaggccctgtccagccccagcgccctgggctcc
cctggcctgggtatggaggggctgaaccgccgacgcaagaagaggaccagcatcgagacc
aacatccgtttggccttagaaaagagatttctggaacagaaccaaaaacctacctctgag
gagatcaccatgatcgccgaccagctcaacatggagaaggaggtgatccgggtgtggttc
tgtaaccgccggcagaaagaaaagaggatcaacccccctagtggtggatatagcaacacc
gggacaggcagcagccccatcaaaaccatcttcacccctacgacccccctggtggccagt
acggccagccttgtgaccagtaacacaccgaccacactgactgtaaacccagtgatgcct
ctcaacagcaccagcgtgtctggcctgaccttcacaggcacgaccataggagcgaccaca
aacacagcgtctgtcatctccacggcacccatggttactgcggtgaccagctcctcatcg
ctaagcccctcccccacggccctccaggccacggcggcggagaccggcggaacccaggag
cacacggtggtcacgcaggcaccgtcgtccctagcgaccactctggggacgggtcaggtg
atggtggctggactgggcctgtcggccgccctgcaaggcgccgcccagttacccaccagc
tctagtttcgccgccatggccgggcttaaccaaggacttatggcgtcatcgcagttcact
cctgggggggccttgctgagcttggctccaggggggctgggaggggctctgaaccccgcc
atgttgagcaacagcaccctggccaccatccaaggtctgtggagcgctctggcatcaggc
ggtgctcttcccatcacctcgctggatgggagcggtaacctgctgttcgccaacacctcc
gccggcagcacccccaacctgatgcaacccctcttcctgaacccccagaacctgtccctg
ctcaccaccaaccctgtcaacctggtgtcagccggagctgctgggggaggggccctgcag
gtctcagctgaccaccaggtcaccacggcgactgtaccagttcccgcctccaccatcacc
actgcctccagggcccagtga
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