Oncorhynchus tshawytscha (Chinook salmon): 112242480
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Entry
112242480 CDS
T05605
Symbol
nbeaa
Name
(RefSeq) LOW QUALITY PROTEIN: neurobeachin a
KO
K24183
neurobeachin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112242480 (nbeaa)
Membrane trafficking [BR:
otw04131
]
Protein recycling
Rab GTPases and associated proteins
Rab4 associated proteins
112242480 (nbeaa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
WD40
Neurobeachin
Laminin_G_3
DUF4800
Motif
Other DBs
NCBI-GeneID:
112242480
NCBI-ProteinID:
XP_042167168
LinkDB
All DBs
Position
LG33:41520658..41790769
Genome browser
AA seq
3018 aa
AA seq
DB search
MSSEKPGSATPLSDPDRTAHPPGPGQPQVVTGAGSAPIGDRMVSGSGSMVLPAVPIRNIQ
MKFAVLVGLIQVGEVSNRDIVETVLNLLVGGEFDLEMNFIIQDSESIGCMVDLLSHCEVT
CQAEVWSMFTAILRKSVRNLQTSTEVGLIQQVLSKMSSVDDMIADLLVDMLGVMASYSIT
VKELKLLFSMLRGDNSIWPRHSIIKLLSVLNQMPQRHGPDTFFNFPHTQTQCSRADAVFC
LLPQAIALPPIAKWPYQNGFTLNTWFRQDPLNNINVDKDKPYLYCFRTSKGVGYSAHFVG
NCLIVTSLKSKGKGFQHCVKYDFQPRKWYMISIVHIYNRWRNSEIRCYVNGQLVSYGDMA
WHVNTNDSYDKCFLGSSETADANRVFCGQLGAIYVFSEALNPAQIFAIHQLGPGYKSTFK
FKSESDIHLAEHHKQVLYDGKQASSISFTYNAKATDAQLCLESSPRENASIFVHSPHALM
LQDVKAIVTHSIHSAIHSIGGIQVLFPLFSQLDYRQLNDSSVDTSVCATLLAFLVELLKS
SVAMQEQMLGGKGFLVIGYLLEKSSRVHITRAVLEQFLSFAKYLDGLTHGAPLLKQLCDH
VLFNAAIWIHTPAKVQLSLYTYLSAEFIGTATIYSTIRRVGTVLQLMHTLXYYYWASNPL
ESSGITPKGLDGPRPSQKEIISLRAFMLLFLKQLILKDRGVKEDELQSILNYLLTMHEDD
NIHDVLQLLVALMSEHPASMIPAFDQRNGIRVICKLLASNSENIRVQALKVLGYFLKHLG
HKRKVEIMHTHSLFTLLGERLMIHTSTVSVTTYNTLYEILTEQVCTQVVHKPHPEPDSTV
KIQNPMILKVVATLLKSSSPSTELMEVKTLFLSDMIKLFSSSRENRRCLLQCSVWQDWMF
SLGYINPKSPEEQKMMEMVYNIFRILLYHAIKYEWGGWRVWVDTLSIAHSKVTYEAHKEY
LAKMYEEYQRQEEENIKKGKKGSVSTISGLSATPAPVVNGNLEIRELDDHSQSQTPESEA
EYGEGGAGGVSRNLLAEGGVGLGVKGPNREALTPGEEGQGSGVRVEVHDLLVDIKAEKVE
ATEVKLDDLDLSPEGMVGGGGVMEGLVRGGRMEGLGGGGIGGGRIENGPLVEVDSLLDSA
YSAVVQKLKGNHGNLTSKDETVVTGLGAIEDDGNMGPLITLADEKDSVPSNNGFLFSKVD
EKLLPALATTDPLVLPSPDQPNPLGSGPVLSSTSASDDLSLLAHMTSCRGSDLNQAQGGL
PEVGPFKIQSPLADISSIAQRESQAAEIQGYPGGEGPSGADGEVAGGKAGGDTVSTTSDT
ERSEDGKEMKIQTTATTQALHGRTAAQLERDLRVDLGFRGMPMTEEQRRQFSPGPRTTMF
RIPEFKWSPMHQRLLTDLLFALETDVHVWRSHSTKSVMDFVNSNENIIFVHNTIHLISQM
VDNIIIACGGILPLLSAATSPSVELENMELTQGMSSETAVSFLSRLMAMVDVLVFASSLN
FSEIEAEKNMSSGGLMRQCLRLVCCVAVRNCLECRQRQRDRDIGCLSKSNLPSSKSQDSL
QSSAAASKDPDRLLQDVDINRLRAVVFRDVDDSKQAQFLALAVVYFISVLMVSKYRDILE
PQREIGRSSSLSGRSIRHEINSPTSTEHPSSSFSEGGRGEKQTPTSMEDSPLASLPHTDS
GIGEEGHGPGGLNGAELGLGLGMAGRETDRDRHRERDGGGVDLLCTLSSEVRRSRESLLD
SPHNPNSASNLGQAPPSSISSISQTNKGINVKEILKSLVAAPLDGGEAGQEVGPTPYHPD
PALKTHPMLPMQFHSFDRSVMVPVKKPPPGTLSVNTVGTPTTSGAATPGSTPNIFAAATA
TPKSMINTTGATDSASSSSSSSSSFVNGATSKNLPAVQTVAPMTDDNVESMSVYCEVEQC
ELRSGLTPPELKPFSSLAGFQTAPRDAGQCLSITTKLERALEKVAPLLREIFVDFAPFLS
RTLLGSHGQELLIEGLVCMKSSTSVVELVMLLCSQEWQNSIQKNAGLAFIELINEGRLLC
HAMKDHIVRVANEAEFILNRQRAEDVHKHAEFESNCAQYAADRREEERMCDHLISAAKHR
DHVTANQLKQKILNILTNKHGAWGTMSQSQLHDFWRLDYWEDDLRRRRRFVRNPFGSTHP
DVSLKALEDYGTEEEEEEGLKSKKTFRSQSVVSQNPEAELMLEGDDDAVSLLQEKEMDNL
AGPVVLSTPAQLVSPVVVVHGTLSITTTEIYFEVDEDDPAFKKIHTKVLAYSEGLHGKWM
FSEIRAVFSRRYLLQNTGLEVFMANRTSVMFNFPDQATVKRVVYSLPRVGVGTSYGLPQA
RRISLATPRQLFKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYE
SEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYDTWEEDGTPPHHYGSLYSTANTTLLW
MLRIEPFTTFFLNANENQFDHPDRAFSGIARAWRDCQRDTADVKELIPEFYYLPEMFVNS
SGFELGQREDGTPVSDIELPAWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRG
PEAVRALNVFHFLSYEGSVTLDTITDPAQRELMETQIQTCGQTPSQLLIEPHPPRSSAMH
LCFLPQSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLSVPAAVTVTCSRLFAVNR
WHNTVGLRGAPGYSLEQAHHLPIEMDPLIANNSGVSKRQITDLVDQSIQINTHCFVVTAD
NRYILVCGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATL
LLWYWSGRHHIIGDNPNNSDYPAPRAVLTGHDHEVVCVSVCAELGLVISGAKEGPCLVHT
ITGDLLRALEGPELCLRPRLISVSSEGHCIICYERGRFCNFSINGKLLAQMEVNDSTRAI
LLSSDGQNLVTGGDNGVVEVWQACDFKQLYIYPGCDAGIRAMDLSHDQRTLITGMASGSI
VAFNIDFNRWHYEHQNRY
NT seq
9057 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcgagaagccgggatctgcaactccactttcggatccagaccgaaccgctcat
cccccgggccccggccaaccccaggtcgttacgggcgctggctctgctcccatcggggac
aggatggtctctggatccggctccatggtgctcccggccgtaccgatcaggaatatccaa
atgaaattcgccgtactggtcggcctcattcaggttggcgaggttagcaaccgggacatc
gtcgaaacggttctcaacctgctggtgggaggtgagtttgacctagagatgaacttcatc
attcaggacagtgagagtatcggctgtatggtcgacctactgtctcactgcgaagtcacc
tgccaagctgaggtgtggtccatgttcacagccatcctgaggaagagtgtgaggaacctt
cagaccagcacagaggtgggcctcatacaacaggtcctgtccaagatgagctctgtggac
gacatgatcgcagatctgctagtggatatgctgggggtgatggccagctacagtatcaca
gtgaaggagctgaagcttctattcagtatgctgaggggagacaacagtatctggcctaga
cattctatcatcaagttgttgtctgtgttgaaccagatgcctcagagacacggtccagac
accttcttcaacttcccacacacacagacgcagtgcagcagggctgatgctgtgttctgt
ctcctcccccaggccatagcgttgcctcccatcgctaagtggccttaccagaacggcttc
actctcaacacctggttcagacaagatcccctcaacaacatcaacgtagacaaggacaaa
ccatacctctactgttttcggaccagtaaaggtgttggttactcagctcactttgtgggg
aactgtctgatcgtgacatcactcaagtccaaggggaaaggcttccaacactgtgtgaag
tatgactttcaaccccgcaagtggtacatgatcagcatcgtccacatctataatcgctgg
aggaacagtgagattcgttgctatgtcaacggtcagctggtctcctatggcgacatggcc
tggcacgtcaacaccaatgacagttatgataagtgttttctaggttcgtcagagacggca
gatgctaacagggtgttctgtggtcagctgggggccatctacgtgttcagtgaggctctc
aaccccgctcagatcttcgccatacatcaactgggtccgggctacaagagcacctttaag
tttaagtcggagagtgacatccacctggccgagcaccataagcaggtcctgtatgacggg
aagcaggccagctccatctctttcacctacaacgccaaggccaccgacgcacagctttgt
ctggagtcatcgcccagagagaacgcatccatcttcgttcactcaccacacgcactcatg
ctgcaggatgtgaaggccatagtgacccactccatccacagtgccatccattctatagga
gggattcaggtcctcttccctctcttttcacaactggactacagacaactcaacgacagc
tctgtggacaccagcgtgtgtgccaccctgctagcgttcctggttgagctgttgaagagc
tccgtggccatgcaggaacagatgctgggaggaaaaggattcctggtgatcgggtacctg
ctggagaagtcgtccagggtccacatcaccagagcggtgctggaacagttcttgtccttt
gctaagtacctggacgggttaacccacggagcgccactcctcaaacagctgtgtgaccac
gtcctcttcaacgctgccatctggatacacacacccgccaaagtccagctgtccctgtac
acctacctgtctgcagagttcattggcacggcgaccatctacagcaccatccgtcgtgtc
ggtaccgtgctgcagctgatgcacacgctgnagtactactactgggccagcaacccactg
gagagcagcggcatcacaccgaaaggactggatggaccgaggccgtcccagaaggagatc
atctctctcagagccttcatgctgctgttcctcaaacaactcatactcaaggatcgggga
gtgaaggaagatgagctacaaagcatcctgaactacctgctcaccatgcatgaggatgat
aatatccatgatgttcttcagttgttggtggctctgatgtcagaacacccagcctccatg
atcccagccttcgaccagagaaacggcatacgggtgatctgtaaactcctagcctctaac
agtgagaacatcagagtccaggctctcaaagtcctgggatacttcctcaaacacctcgga
cacaagaggaaggtggagatcatgcacacacacagcctgttcaccctgctgggagagagg
ctgatgatccacaccagcacagtcagcgtcaccacctataacacactctatgagattctg
acggaacaggtgtgtacccaggtagtccacaagcctcacccagaacctgactccaccgtc
aagatacagaaccccatgatactgaaggtggtagcgaccttgttgaagagctctagtccc
agtactgaactgatggaggtcaagacactgttcctgtctgacatgatcaaactgttcagc
agcagccgagagaacagacggtgtctgttacagtgttcagtgtggcaggactggatgttc
agtctgggttacatcaaccccaagagcccagaggaacagaagatgatggagatggtctat
aacatcttcaggatcctgctctaccacgccatcaagtatgagtgggggggatggagggtc
tgggtggatacgttgtccatcgctcactccaaggtaacctacgaggcccataaggagtac
ctggctaagatgtacgaggagtaccagcgacaggaggaggagaacatcaagaaggggaag
aaaggttctgtctccaccatctccggcctctcggccacgcccgcccccgtcgtcaacggc
aacctggagatccgcgagctggacgaccactcccagagccagacccccgagagtgaggcc
gagtacggagagggaggagcaggaggggtctccaggaatctgcttgctgagggaggggtc
gggttgggcgtgaagggacccaacagagaggcattgacccctggggaggaaggtcagggg
tcaggcgttagggtcgaagttcatgacctcctggtggatatcaaggcggaaaaggtggag
gccacagaggtcaaactagacgacctggatctgtctccagaagggatggtcggaggagga
ggagtgatggagggactggttagaggagggaggatggagggattgggaggaggagggata
ggaggagggaggatagagaacgggccactggtggaggtggactccctgctggacagcgcc
tacagtgccgtggtgcagaagctgaaagggaaccacggtaacctgacatctaaagatgag
acggtggtcacggggcttggcgccatagaggatgatgggaacatgggtccgctcatcacc
cttgccgacgagaaagatagtgtccctagcaacaacggattcctcttcagcaaggttgat
gagaagcttcttccagcactggccaccacagaccctctggttctgcccagcccggaccag
cccaaccccttaggctctggccccgtcctctcctccaccagcgccagcgacgacctgagt
ctcctagcccacatgacctcctgcaggggctcagacctgaaccaagcccagggagggctc
cccgaggtcgggcccttcaagatccagagccccctggctgacatcagctccattgcccag
agagagagccaggcagctgagatccagggctacccagggggagagggtccgtctggggca
gatggagaggtggcagggggtaaggctggcggtgacacggtgagcaccacgtctgataca
gaaaggtctgaagatgggaaggagatgaagatccagaccacggccactactcaggctctc
cacggtcgtacggcggcccagttggaacgtgacctgcgtgtggacctgggattcagaggg
atgcccatgacagaggagcaacgacgccagttcagccccgggcctcgcaccaccatgttc
cgtatcccagagttcaagtggtcgcccatgcaccagcgcctcctcactgacctgctgttc
gccctggagacagacgtacacgtctggaggagccattcaaccaagtcagtaatggacttt
gtgaacagcaatgagaacatcatctttgtccacaacactatacacctcatctctcagatg
gtggacaacatcattatcgcctgtggagggatcctccctctgctctctgcagccacctcc
ccctctgttgagttagagaacatggagttgacccagggcatgtcttcagagacggcggtg
tcctttctgtctcggctcatggccatggtggacgttctggtgttcgccagctccctcaac
ttctctgagatagaggctgagaagaacatgtcctctggaggtctgatgagacagtgtcta
cgactggtatgttgtgtagccgtgaggaactgtctagagtgtagacagagacagagagat
agagatattggttgtctctccaagtctaacctgcccagcagcaagtcacaggacagccta
cagagctccgctgcagctagcaaggatccagacagacttctacaggacgttgacatcaac
cgcctcagagctgtcgtcttcagagacgtggatgacagtaagcaggctcagttcctggcc
ctggcggtggtctacttcatatctgtcctgatggtgtcaaagtaccgggatatcctggaa
ccacagagagagattggcaggtcaagcagcctatcagggaggagcatccgccacgagatc
aactcccccactagtacagagcacccgtcgtcctccttttctgagggtggccggggggag
aagcagacccccacctccatggaggactctccattggcctctttaccccacaccgactca
ggcattggggaggagggccatggccctgggggtctgaatggagccgagctgggcctaggg
ctggggatggcaggcagggagacggacagagatagacacagagagagggatggaggcgga
gtggatctactgtgcaccctgtcatcagaggttaggaggtcaagggagagcctattggat
tctcctcataaccctaactccgcctccaatcttggtcaagcacctccctcgtcgatctca
agcatcagccagactaacaagggcatcaacgtcaaggagattctgaagagccttgtggcc
gcgcccctggacggtggggaggcgggacaggaagttggtcccaccccctaccaccctgat
cccgccctcaagacacaccccatgctgcccatgcagttccactcattcgacaggtctgtg
atggtgccagtcaagaagccccctcccggcaccctgtcagtcaacactgtgggcacgccc
accaccagcggcgcggccacaccaggaagtacaccaaacatcttcgctgctgccacggca
acgcccaagagcatgatcaacaccacaggtgccactgactctgcctcttcttcctcttct
tcttcctcatccttcgtcaacggggcgaccagtaagaacctaccagccgtacagacagtg
gctcccatgaccgatgacaacgttgagagcatgagtgtctattgtgaggtggagcagtgt
gagctgcgcagcggtttgactcctcctgagctcaagccctttagctctctggcaggcttc
cagacagccccccgcgatgcaggacagtgtcttagtatcaccactaagttggagcgtgcc
ctggagaaggtggcccccctcctgagggagatctttgtggactttgctccgttcctctct
aggaccctgttgggtagccacggccaggagctgctcattgaaggtctggtctgtatgaag
tccagtacttcagtagtagagctggtcatgctgctctgttctcaggagtggcagaactct
atccagaagaacgctgggctggccttcatagagctcatcaatgagggaagattgctgtgc
catgctatgaaggaccacattgtgcgtgtggccaacgaagcagagtttatccttaacaga
cagagagctgaagacgtacacaaacacgctgagtttgagtctaactgtgcccagtacgct
gctgacaggagggaggaggagaggatgtgtgatcacctgatcagcgctgccaagcacagg
gaccatgtgaccgccaaccaattgaaacagaagatactcaacatcctgaccaataagcac
ggggcgtggggcacgatgtcacagagccaattacatgacttctggcgtctggattactgg
gaggatgacctgaggaggaggcggagattcgtacggaacccctttggctccacccaccct
gacgtgtcactcaaagccctggaggactatggtactgaggaggaggaagaggagggtcta
aagtctaagaaaacgttccgcagccagtcagtggtcagtcagaacccggaggcggagctt
atgctggaaggagatgacgacgctgtcagtctgctgcaggagaaagagatggacaacctg
gcaggccctgtggtgctcagtactccagcccagctggtttctccagtagtggtggtccac
gggactctctccatcaccaccacagagatctactttgaggtggacgaggacgacccggcc
ttcaagaagatccacaccaaggtcctggcctactccgagggtctacatggcaagtggatg
ttcagtgagatcagagctgtcttctccagaagatacctgctccagaacactggtctagag
gtgttcatggccaaccgcacgtctgtgatgttcaacttccccgaccaggctacagtgaag
agggtagtctacagcctacccagggtgggagtaggaaccagctacggactgcctcaggcc
aggcgtatctccttggcgacgcctcgtcagctgtttaagtcgtccaacatgacccagcgc
tggcagaggagggagatctccaacttcgagtatctcatgttcctcaacaccatcgcaggg
aggacttacaatgatctgaaccagtacccagtgtttccttgggttctcactaactatgag
tcagaggagctggacctcactctgcccggcaacttcagagacctatccaagccaatcgga
gcgttgaacccgaagcgagctgtgttttatgcagaacgctatgatacctgggaggaggat
ggaacgcctccgcatcactacggctccctctactctaccgctaacaccacactgctctgg
atgctgcggatagagccctttaccacgttcttcctgaatgccaatgagaaccagtttgac
caccctgacagagccttctctggcatcgcacgggcatggagggactgccaacgagacacc
gctgacgtcaaggagttgatcccagagttctactaccttccagagatgtttgttaacagt
agtggttttgagctgggacagagagaggacgggactcctgtgtctgacatagaactgcca
gcctgggccaagaaacctgaggactttgtacgcatcaaccgcatggcgttggagagtgag
tttgtgtcgtgccagctgcaccagtggatagatctgatatttggttataagcagcgaggg
cccgaggctgtacgagctctcaatgtcttccatttcctgtcctacgagggctccgtcact
ttggataccatcaccgaccccgcacagcgggagttgatggagacccagatccagacatgt
ggtcagactccatcccagctgctgatcgagccacacccccctcgctcctctgccatgcac
ctgtgttttcttcctcagagtcctctgatgtttaaggaccagatgcagcaggatgtgatc
atggtgctgaagttcccctccaactcccctgtgacccacgtagcagccaacaccctgccc
cacctctctgtccctgctgctgtcaccgtcacctgcagcagactgttcgctgtcaaccgt
tggcacaacaccgtcggtctgcggggcgctccaggttactccctagaacaggctcatcac
ctgcccatagagatggaccctctcattgccaacaactcaggtgtgagtaagcgtcagatc
acagacctggtggaccagagcatccagatcaacacacactgcttcgtggttaccgccgac
aaccgctacatcctggtgtgtggcttctgggacaagagcttcagagtctactctaccgag
acaggtaaactgacccagatagtgtttggccactgggacgtagtgacgtgcctggcccgg
tcagagagctacatcgggggggactgttacatcgtgtcggggtccagagacgctaccctg
ctgctgtggtactggagcggacgccatcacatcattggagacaaccccaacaacagtgac
taccctgctcctagagctgtgctgacgggtcatgaccatgaggtggtgtgtgtgtccgtc
tgcgctgagctgggactggtcatcagtggggccaaagagggtccatgtctggtccatact
ataacaggggatctgctgcgggccctggagggcccagagttgtgcctgaggccccgcctc
atctctgtgtccagcgagggccactgtatcatctgttatgagagaggacgcttctgtaac
ttcagcatcaacgggaaactactggctcagatggaggtcaacgactctacacgggcgatc
ctgttgagtagtgacggtcagaacctggtgacaggaggagacaacggggtggtggaggtg
tggcaggcctgtgacttcaaacagctctacatctacccaggctgtgacgctggcatccgc
gccatggacctctctcacgaccagaggactctgatcactggcatggcgtctggcagcatc
gtagctttcaacatcgacttcaaccgctggcactacgaacaccagaacaggtactga
DBGET
integrated database retrieval system
