Oncorhynchus tshawytscha (Chinook salmon): 112242622
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Entry
112242622 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: probable ubiquitin carboxyl-terminal hydrolase FAF-X
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
otw01002
]
112242622
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112242622
Enzymes [BR:
otw01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
112242622
Peptidases and inhibitors [BR:
otw01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
112242622
Ubiquitin system [BR:
otw04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
112242622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
DUF3517
UCH
UCH_UBL1
UCH_1
FAST_1
Vps23_core
DUF2014
Motif
Other DBs
NCBI-GeneID:
112242622
NCBI-ProteinID:
XP_042175859
LinkDB
All DBs
Position
LG03:69409702..69486666
Genome browser
AA seq
2627 aa
AA seq
DB search
MTATTRGSPVGGNDSQSGQGQAPDAQSPSQPPLPQNQTLSPNSSNENSPVSPPDEQGQGD
GPPQLEEEVEEPAFPHTDLTKLDDMINRPRWVVPVLPKGELEVLLEAAIELSKKELDVKC
EACQRFFRDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLVELCVAKLSQDWFPLLEL
LAMAFNPHCKFHIYNGTRPSETVPAGAQLADDELFARPPDPRSPKGWLVDLINKFGTLNG
FQTLHDRFISGQALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPVIEMVPQFLENLTDEE
LKKEAKNEAKNDALSMIIKSLKNLASKVPGQEETVKNLEIFRLKMILRLLQISSFNGKMN
ALNEVNKVISSVSYYTHRHGNPEEEEWLTAERMAEWIQQNHILSIVLRDSLHQPQYVEKL
EKILRFVIKEKALTMQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFK
ASWTNASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQALSAHI
KILDYSCSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSLFGEAPQNLSQTQRS
PHVFYRHDLINQLQHNHALVTLVAENLSAYMETMRQFSKAEQAEFDPQTVRVGSRYSHVQ
EVQERLNFLRFLLKDGQLWLCAPQAKQIWKCLAENAVFLCDREACFKWYSKLMGDEPDLD
PDINKDFFENNVLQLDPSLLTENGMKCFERFFKAVNCREGKLVAKRRAYMMDDLELIGLD
YLWRVVIQGSDDIASRAIDLLKEIYTNLGPKLQVNQVEIHEDFIQSCFDRLKASYDTLCV
LEGDKDSINCARQEAIRMVRVLTVLKEYINECDSDYHEERTILPMSRAFRGKHITLIVRF
PNQGRQVDDLDIWSHTNDTIGSVRRGILTRIKANATHTKIELFIGGEVVDPADDRKLIGQ
LNLKDKTLITAKLTQVSANMPSSPDSSSDSSTGSPGNHGNHFSEGPNPEVESCLPGVIMS
LHLRYVSFLWQVADLGCSPNMPLLRDGARVLMKLMPPDNSTVESLRGVCLDHAKLGENGL
SPTLDSRFFGPSPSQVLYLIEVVYALLMPASSTLGEDASDFQYNFLKSGGLPLVLSMLTR
NNFLPSADMETRRGAYLNALKIGKLLLTAVGFGHVKAVAEACQPNAEGTTPVSPINQATH
DQALVLQSALQNLPNPASECMLRNVAIRLAQQISDENFFQASKYIPEICVIRAVQKIAWA
SGCGTIQLVFSSNEEISKIYEKTNVVKEPDGEDEQVCCEALEVMTLCFALLPTALDTLSK
EKAWQTFIIDLLLHCHSKSVRQMAQEQFFLMATRCCMGHRPLLFFITLLFTVLGSTAKER
AKHAGDYFTLLRHLLNYAYNSNINLPNAEVLLNNEIDWLKKIRVRLRRTQDPHREKHILE
KHIGVTKELLAFQTPEKKYYIGCENGGANLIKELMDDFIFPASNVYLQYMKSGEFPTEQA
IPVCSSPAXINAGFELLVALSVSCVRNLKQIVNMLTDMYYLGCEALTEWEYLPPVGPRPT
KGFVGLKNAGATCYMNSVIQQLYMIPPIRDGILAIEGTGTDVDDDMSGDEKQESESNADP
RDEVFSYNHQFDDKPSLSKSEDRKEYNIGVLRHLQVIFGHLASSRLQYYVPRGFWKQFRL
WGEPVNLREQHDALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQKICQGCPHRYEC
EESFTTLNVDIRNHQNLLDSMEQYVKGDLLEGANAYHCEKCNKKVDTVKRLLIKKLPPVL
AIQLKRFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDDVNPENQVIQQNEPS
DPEPPGSSKYRLVGVLVHSGQASGGHYYSYITQRNVGVADGERNRWYKFDDGDVTECKMD
DEEEMKNQCFGGEYMGEVFDHMMKRMSYRRQKRWWNAYILFYERMDSLDKDSELVKYIQE
LTISSSSNNKPSHQVKMPNVIECSVRKQNVQFMHNRMQYSLEYFQFVKKLLTCNSVYLNP
PPGQDHLLPDAEEMAMISVQLAARFLFSTGFHTKKVVRGAASDWYDALCVLLRHSKNVRY
WFAQNILFAYANRFSEYLLECPSAEVRGAFAKLIVFIAHFSLQDGPCPPPTASPAGASTQ
SQACDNLRLSDHLLRAVLNLLRREVSEHGRHLQQYFNLFVMYANLGLAEKTQLLKLSVPA
TFMLVALDEGPGPPIKYQYAELGKLYTVVSQLVRCCDVAARMQSSINGNPPLPNPYGDAN
QTTPVMPVQQLVGEILFVRTSYVKKIIEDCSNSEETVKLLRFSCWENPQFSSTVLSELLW
QVAYSYTYELRPYLDLLLQILLIEDSWQTHRIHNVLKGIPDDRDGLFDTIQRSKNHYQKR
AYQCIKCMVALFSSCSVAYQILQSNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWS
PPVQSNETSNGYFLERSHSARMTLAKACELCPEECHLTKPGEAMSEEEAAMRKSSSPQQL
LPGDGTGPQQHTEPDDQEASEDQDTSPPEDTSLYPHSSPGTTTQFQQNNHPHGQPYTGPA
AQLMNNPQHPGPAPSTPGPDPGPRAQENWESTEEVPSTSTAPTSPKE
NT seq
7884 nt
NT seq
+upstream
nt +downstream
nt
atgacggccaccacgcgtggctctccggtggggggcaacgacagccagtcgggccagggc
caggcacccgatgcccagagtccgagtcagcccccgctgccacagaaccagactttgtcc
cctaactcgtccaatgagaactctccagtgagccccccggatgagcagggtcagggggat
ggacccccacagctggaggaggaggtggaggagccagccttccctcacacagacctgaca
aagctggatgacatgatcaacagaccccgctgggtggttcccgttctgccaaagggagag
ttggaggttcttctagaagctgctatagagcttagtaaaaaggaacttgatgtgaagtgt
gaggcatgccagaggtttttcagggacggcctgaccatctctttcaccaagattctcaca
gacgaggccgtcagcgggtggaagttcgagatacataggtgtatcatcaacaacacccac
cggctggtggagctgtgtgtggccaagctctctcaggactggttccccttgctggagctg
ctggccatggccttcaacccccactgcaagtttcacatctacaatggcacgaggccctct
gagacggtgcccgccggggcgcagctggcagacgatgagctctttgcccgcccccctgac
cctcgctctccaaagggctggttggtggatttaattaacaaattcggcacgttaaacggg
tttcaaacgctgcacgatcgcttcataagtggccaagcactgaacgtccagatcatcgct
gcccttatcaagcctttcgggcagtgttacgagtttctcacgttgcacacggtgaagaag
tacttcctgcccgtcatcgagatggttcctcagttcctggagaatctgacagacgaggag
ctgaagaaggaagctaagaacgaagccaaaaatgatgccctgtccatgatcatcaagtcc
ctgaagaacctggcctccaaggtgcctgggcaggaggagactgtcaagaacttagagatt
tttaggttaaaaatgattcttaggttattgcaaatttcctcttttaatggcaaaatgaat
gcactaaacgaagtaaacaaagtaatctccagtgtgtcctattacacacatcggcatggc
aaccccgaggaggaggagtggctaactgcagaacgcatggcggagtggatccagcagaac
cacatcctgtccattgtgctgagggacagcctccaccagcctcagtatgtagagaaacta
gagaagatactgcgcttcgtcatcaaggagaaagctcttaccatgcaggacctggacaac
atctgggctgcacaggctggtaaacatgaggccattgtgaagaacgtacacgacctgttg
gccaagctggcctgggacttctctcctgagcagctcgaccacctctttgactgcttcaag
gcgagttggacgaacgccagtaagaagcaacgtgagaagctgttggaactgatccgtcgc
ctggcggaggatgacaaggatggcgtgatggcccacaaggtgctgaacctattgtggaac
ctggctcacagcgatgacgtgcctgtagacatcatggaccaggcactcagtgctcacata
aagatactggactacagttgctctcaggatagagacacgcagaagatccagtggatcgat
cgcttcatagaagagttgcgcaccaatgacaaatgggtgattcctgcactaaagcagatc
cgagagatctgtagcctgttcggagaggctcctcagaatctcagtcagacccagaggagt
cctcatgtgttctatcgtcatgacctgattaaccagctgcaacacaaccatgccctggtc
acgctggtggctgagaacctctctgcctacatggagaccatgaggcagttctctaaagcc
gagcaggcggagtttgacccccagacggtgagggtagggagccgctacagccacgtacag
gaagtccaggagagactcaacttcctgaggttcctgctgaaggatggccagttgtggctc
tgtgctcctcaggccaaacagatctggaagtgcctggctgagaacgcagtctttctttgt
gaccgagaggcctgcttcaaatggtactccaagctgatgggtgatgagccagacctggac
ccggacatcaacaaggacttctttgagaacaacgttctgcagctggacccgtctctgctc
acggagaacggcatgaagtgctttgagaggttcttcaaggctgtcaactgcagggaaggc
aagctggtggccaaacgtagggcttacatgatggacgacctggaactcataggcctggac
tacctctggagggtcgtaattcaagggagtgatgacatcgccagtcgagccatagacctg
ctgaaagagatctacaccaaccttggaccaaaactacaagtcaatcaggtagagatccac
gaggatttcatccagtcatgtttcgaccgtctgaaggcgtcgtacgatacgctctgtgtt
ctggaaggggacaaggacagcatcaactgtgcccggcaggaggccatccgcatggtccgc
gtgctcactgtgctcaaggagtacatcaacgagtgtgacagtgactaccatgaggagagg
accatactgcccatgtccagggcgtttcgggggaagcacatcacattgatcgtgcgtttc
cctaaccagggccgtcaggtggatgacctggacatctggtctcacaccaacgacaccatt
ggctcagtgcgccgcggtatcctcacacgcatcaaggccaacgccacgcacaccaagata
gagctcttcattggcggggaggttgttgacccagccgacgacaggaagctgattggccag
ctcaacctgaaagacaaaacgttgatcacagccaagctgacccaggtgagtgccaacatg
ccctccagcccagacagctcctcggactcttccactggctcaccgggtaaccatggcaac
cacttcagcgaagggcccaaccccgaggtggagagctgcctccctggagtgatcatgtct
ctccacctgcgctacgtctccttcctgtggcaggtagcagacctgggctgtagccccaac
atgcctctgctacgagacggagccagagtactgatgaagctgatgcctccagataacagt
accgtggagagcctgcgtggtgtatgtctggaccatgccaagctgggagagaacggcctc
agcccaacactggactcacgcttctttggcccctcgccatcacaagtcctctacctcata
gaggtggtgtatgccctgctcatgccagccagctccacattgggtgaggacgccagcgac
ttccagtacaacttcctgaagagtggcgggctaccgctggtactgagcatgctcacgcgg
aacaacttcctgccatcggccgacatggagacgcggcgaggggcgtacctcaacgctctt
aagatcggcaaactgctgctcaccgctgttgggttcggacacgtcaaagctgtggccgag
gcttgccagcccaacgctgaggggaccacacccgtctcaccgattaaccaggccactcac
gaccaggctttggtcctccagagtgccctgcagaacctccccaaccctgcctctgagtgc
atgctccgcaatgtagctatacgcctggcccaacagatctctgacgagaacttcttccag
gcgtcgaagtacatccctgagatctgtgtgatccgggcggtgcagaagatagcatgggct
tcaggctgtggcaccatacagttggtcttcagctccaatgaagagatcagcaaaatctat
gagaagacaaatgtggttaaagagccggatggggaggatgagcaggtgtgctgtgaggcc
ctggaggtcatgaccctgtgtttcgccctgctgcccaccgctctggacacactcagtaag
gagaaggcctggcagaccttcatcatagacctgctactgcactgtcacagcaagtcagtt
cgtcagatggcccaggagcagttcttccttatggccaccaggtgctgcatgggccaccga
cccctcctcttcttcatcaccctcctcttcactgtgctggggagcacagctaaagagcgg
gccaagcatgctggggactacttcaccctgctcaggcacctcctgaactacgcctacaac
agcaacatcaacctgcccaacgcagaggtgttgctcaacaacgagatcgactggctgaag
aagatcagggtacgactacgcagaactcaggatccgcatcgcgaaaaacatattcttgaa
aaacacatcggagttaccaaggagttgctggccttccagacaccggagaagaagtactac
atcggctgtgagaatggaggggccaacctcatcaaggagttgatggacgacttcatcttc
ccagcgtctaacgtgtacctgcagtacatgaagagtggggagttccctacggagcaggcc
atccctgtctgtagcagccccgccnncatcaacgcaggcttcgagctgctggtggctctg
tcagtgagctgtgtccggaacctcaagcagatcgtcaacatgctcactgacatgtactac
ctaggttgtgaagctctgacagagtgggagtatctccctccggtggggccgcggcccact
aaaggctttgtggggctgaagaacgctggggccacctgctacatgaactcagtcatccag
cagctttacatgatccctcccatccgcgacggaatcctggccatcgagggcaccggcacc
gacgtggacgatgacatgtccggcgacgagaagcaggagagcgagagtaacgcagacccg
cgggatgaggtatttagctataaccaccagtttgacgacaagccgtcgctcagtaagtcg
gaggacaggaaggagtacaacattggggtgctgcgccacctacaggtcatctttggtcac
ctggcctcctccagactgcagtactacgtaccccggggcttctggaaacagttcaggtta
tggggtgagccggtgaacctgcgagagcagcacgatgccctggagttcttcaactcccta
gtggacagtctggatgaggctctgaaggccctgggtcacccggccatgcttagcaaggtg
ctggggggatccttcgccgaccagaagatctgccaggggtgcccacatagatatgagtgt
gaggagtcgttcaccactctgaatgtagacatcaggaaccaccagaacctgttggactct
atggagcagtatgtcaagggagacctgctggagggagccaacgcataccactgtgagaag
tgcaacaagaaggtggacacagtgaagcgtctgctgatcaagaagcttcccccagtgctg
gccatccagctgaagaggtttgactacgactgggagagggagtgtgccatcaagttcaac
gactactttgagttccccagggagctggacatggagccctacactgtagccggggtggcc
aagctggagggggacgacgtcaacccagagaaccaggtgatccagcagaacgagccctct
gatccagagcccccgggcagctccaagtaccgcctggtgggggtgctggtccactcaggc
caggccagcggcggacactactactcctacatcacgcagaggaacgtgggcgtggccgac
ggcgagcggaaccgctggtacaagtttgacgacggcgacgtgactgagtgcaagatggac
gacgaggaggagatgaagaaccagtgcttcggaggggagtacatgggcgaggtgtttgac
cacatgatgaagaggatgtcctaccggcgccagaaacgctggtggaatgcctacatcctc
ttctacgaacgcatggactcattggacaaggacagtgagctggtcaagtacatccaggag
ctgaccatctcgtcctcgtccaacaacaagccgtcgcaccaggtcaagatgcccaacgtg
atcgagtgcagcgtgcgaaagcagaacgtgcagttcatgcacaaccgtatgcaatacagc
ctggagtatttccagtttgttaagaaacttctgacctgtaacagtgtctatttaaaccct
ccgccaggacaagaccatctactgcccgatgcagaggagatggctatgattagtgttcag
ctggctgctaggttcctcttcagcactggtttccacaccaagaaagtagtgaggggggcc
gccagtgactggtatgatgcgctgtgcgtcctgctgagacacagtaagaatgtacgctac
tggtttgcacaaaacatcctgtttgcctacgccaaccgcttctccgagtacctgctggag
tgccccagcgctgaggtccggggcgcgttcgccaaactcatcgtcttcatcgcacacttc
tcccttcaagacggaccctgccccccgcccacagcatcccctgccggcgcctccacccaa
tcacaggcgtgtgataacctgcgtctcagtgaccacctgttgagggctgtgttgaacctc
ctcaggagagaggtgtcagagcatggccgacacctgcagcagtacttcaacctcttcgtc
atgtatgccaacctagggctggcagagaagactcagttgttgaagctgagtgtcccagct
accttcatgctggtggctctagacgagggacccggtcctcccatcaagtaccagtatgca
gagctggggaaactctacaccgtggtctcccagctggtgcgctgctgtgatgtggccgca
cgcatgcagtcatccatcaatggtaacccccctctccctaacccgtacggcgatgccaac
cagaccaccccggtgatgcctgtgcagcagctggtgggagagatcctttttgttaggacc
agctacgtgaagaagatcatcgaggactgcagcaactcagaggagacagtcaagctgctg
cgcttcagctgctgggaaaatccccagttctcctctactgtgctatcagagctgctctgg
caggtggcgtactcctacacctacgagctgaggccttacctggacctgctgctgcagatc
ctgctcatcgaggactcctggcagacacacaggatccacaacgtgttgaagggtatacca
gacgacagggacggcctgtttgacaccattcagcggtccaagaaccactaccagaaacgg
gcctaccagtgtatcaagtgcatggtggccctgttcagcagctgctctgtggcctaccag
atcctacagagtaacggggacctgaagcgtaagtggacctgggcggtggagtggctgggg
gatgagctggagaggagaccctacacagggaacccccagtacacctacaacaactggtct
ccacccgtccagagcaacgagacctccaacgggtacttcctggagcgctcgcactctgca
cgtatgaccctggccaaggcctgcgaactttgccccgaggagtgtcacttaacgaagccc
ggtgaggccatgtctgaagaagaagctgccatgcggaaatcgtcctcgccacagcagctt
ttgccaggggacgggacaggaccacagcaacacactgagcctgatgaccaggaagcctct
gaagatcaggacacctcccctccagaggacacctccctctacccacactcatctcctggg
acgaccacacagtttcagcagaacaaccacccccacggacagccatacacaggccctgct
gcccagctcatgaacaacccccagcaccctggccctgccccttctaccccaggccctgac
cccggcccaagagcacaagagaactgggagagcactgaggaggtcccctccacctccacg
gcccctacctcacctaaggagtaa
DBGET
integrated database retrieval system
