Oncorhynchus tshawytscha (Chinook salmon): 112242875
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Entry
112242875 CDS
T05605
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
112242875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
otw03009
]
112242875
Ribosome biogenesis [BR:
otw03009
]
Eukaryotic type
Pre-60S particles
RNases
112242875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
Motif
Other DBs
NCBI-GeneID:
112242875
NCBI-ProteinID:
XP_024266520
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All DBs
Position
LG01:21551981..21566994
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AA seq
1307 aa
AA seq
DB search
MLRSTGFFLGIDCPFYTDSCNVKSVKDGCKRPYCHFRHSQQRRASYGSNDIRKSNELYSK
QKEQCGYDPFKPEVVRHGEPAAATVDMGALELELVNRAIEEVRSEVEREKKKLSRIGDQE
YDPTDSSPKVVTKWPKPLAVTSHLAYDPGSYQMTTTADYNPTPRSSKYTLDSDSKDNHAS
SMEYVPTSVTKIAVKKPVPRTQTPQLHSLPTSLKYSTIASCSKNKYTVDHSKPSTDMEYD
PLCNYSAKIAGKNKKPQRTGTTKGEGKKRPHLSGTGKQSTDEEYVPTIKKPWQVIPDPLK
YTASFSESDEESSGIEYRPTSLSRLQRRKSSSGSVEEASGPGKGERAEGAVGGLKQQRSQ
ESKKQQDATHWESEDLENQEIVARQKDKPETEIVAGKTSLVKSSKVKNVHKYEKESSKKS
GGGAGGSSNKKGAGDGEKISDSKKSSHEAAKRDRKNQGKKEEKCKIKDTSIDKGKEGKGD
KRSDGKSKIRTDTFKGESSKRENEREKGGGDNKLQTSDKGKDSKFKEHKNGKYDSNEREK
DSKKVSKGSSKIGKDQVKKSSSSSSDGKPGKVKQRSLSHVDLFGDESVEEESDEEEETIV
RKSVAPFKRGSLTRRNVSELTPSSSEDEDVGAEDDGGYGDMDDCGVDYSSLQVDMDFDLD
DDPMEECLRIFNESKDVKTEDKGRQAKPSKDSEDEDSTESNQTTLFPGQRKRVSHFSAKG
STEATPKPPPYRRLTAQEICYQRMQIAQQQAAQLAAAVKTASTPSPFPGERKRVAHRPTP
LPSSSKSGLAVAKSAGSRVLSPTSTLPAGLSVKAQTSAGILSKTTTTIVQKRVAHTPTMK
SSAMKRPVIPTTFGAKVPTNVRQRYLNTFIDECMKFCPSEDLAFQMALEEEKVVYDRSSS
KNIYLNVAVNSLKKLRSKSSSPNSLVAMNPAVVGNRKSQSHEEVLGGRLAAKTSFTINRT
GKQQAEKLSGATLYRKLRDYLMTEERLQEHGYPRPHPESSGRAVVHNFPEKNNVDRKSLQ
STYKPFSVWGWIQSFSTRHIKKKCSSTNLFSFQAFAKVCCRCGAEYKINANGNCVRKEEC
NHHWGRLRRHKVSGGWETNYNCCSGTVGSPGCSLSKQHVQDGRKESLGGYVQTFEKQLPP
DGNCGVYALDCEMCYTKQGLELTRVTVINSELKVIYDTFVKPESKVVDYNTRFSGVTEED
LENASITLRDVQAVMLNMFNAESILIGHSLESDLFALKVIHSTVVDTAIVFPHRLGLPYK
RALRNLMADHLKRIIQDSVEGHDSSEDACACMELMMWKIREDAKVKR
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atgctgagatccaccggtttcttccttgggattgactgcccgttttacacggatagttgc
aacgtgaaaagtgtcaaagatgggtgcaaaagaccgtactgtcacttcagacacagccaa
cagagacgggcgtcttatggatcaaatgacataagaaaatcaaacgagctttactccaaa
caaaaggagcaatgcggctatgacccattcaaaccagaggtagtgagacatggggagcct
gctgctgcaacagtggacatgggtgccttggaacttgagttggtcaatcgtgccatcgag
gaggtacgcagtgaggtggagcgggaaaagaagaaactctcacgaatcggggatcaggaa
tatgaccctaccgacagttcccccaaagtggttactaaatggccaaaaccactggccgtg
acatcacacttggcgtatgacccaggcagttatcagatgactacaacagctgattacaac
cctacccctcgctccagtaagtacaccttggattccgacagcaaagacaaccatgccagc
tccatggaatatgtgcccacctcagttaccaaaatagctgtgaaaaagcctgttcctcga
acacaaactcctcaactacactctttgcctactagtcttaaatactccactattgcatcc
tgctccaagaataagtacacagtggatcattctaaaccatccacagacatggaatatgac
cctctctgcaactattcagcaaaaatagctggcaagaataagaaaccccagaggacagga
actactaagggtgaaggaaaaaagagacctcacctgtcagggacaggaaagcagtcaaca
gatgaggaatatgtgccaaccattaagaagccttggcaggtaataccagacccactgaag
tacactgccagtttctctgagtctgatgaagagagctctgggatagagtatcgacccacc
tctctcagccgtctgcagaggaggaaaagcagcagtgggtcagtggaggaagcctcaggt
ccagggaaaggagagagggcggaaggagccgtaggtgggcttaaacaacagaggagtcag
gagtctaaaaagcagcaggacgccacacactgggagtcagaggacttggagaaccaggaa
atagtagctaggcagaaagacaagccagagactgaaatagtggcaggtaaaaccagccta
gtgaagagcagcaaagtaaagaatgtgcataaatatgaaaaggagtccagtaaaaagagt
ggtggtggtgctggtggtagtagtaataaaaaaggagcaggggatggtgagaaaataagt
gattcaaagaaatcaagccacgaagctgcaaagagagaccgcaagaatcagggaaagaaa
gaagaaaaatgcaagataaaggatacatctatagacaaaggcaaggagggaaagggagac
aagagaagtgatggaaagagtaagataaggacagacacatttaaaggggagtcaagcaag
cgggagaatgagcgagaaaagggaggtggggataataaactgcagacttcagacaaggga
aaggactctaagtttaaagaacacaagaatggtaaatatgacagcaatgaaagagaaaaa
gattcaaagaaagtaagcaaagggagttctaaaatcggtaaagaccaggtgaagaaaagc
agcagtagctcctctgatggcaaaccaggaaaggtgaaacaaagatctctgagtcacgta
gatctgtttggtgatgagagtgtagaggaggaaagtgatgaggaagaggagacaattgtg
aggaagtcagttgctcctttcaagagggggagtttgactaggaggaatgtctcagagctc
accccctcatcctcagaggatgaagatgttggtgcagaagatgacggaggctatggtgac
atggatgattgtggggtggactactccagtctgcaggtggacatggactttgacctggat
gatgacccaatggaggagtgcttacggatcttcaatgaatccaaggatgtgaagactgag
gacaagggaaggcaagccaagccctctaaagattcggaggatgaggattccacagagagc
aatcaaaccactcttttccccggtcagaggaaaagggtttcacatttctcagccaaagga
agtactgaggcaaccccgaagcctccaccgtacaggagactgactgcccaggagatctgt
taccagcgtatgcagatagcacagcagcaggctgcccagctggctgcagctgtgaagact
gcctccacacccagccctttccctggggagaggaagagagtagcccaccgccccacccct
ttaccatcctcttccaaatctggtcttgccgtggcgaagtcggcgggcagcagagtgttg
tcgcccaccagtaccctcccagcaggtctctctgtgaaggcccaaacatcagccggcatc
ctgtcaaagaccaccaccactattgtacagaagagggtggcacacactcccacaatgaag
agctctgcaatgaagcggccagttattcccaccacgtttggggccaaagttcccaccaac
gtccgccagcgatacctcaacacatttatagacgagtgtatgaagttctgcccctctgaa
gacttggccttccaaatggccctggaggaggagaaggtggtgtatgaccggagcagcagt
aagaacatctacctcaacgtggcagtcaactccctgaagaagctacgcagcaagagcagc
tcccccaactcactcgttgccatgaaccctgcagtggtggggaacaggaagtcccagtcc
catgaagaagtgctggggggacgcctcgctgccaagaccagcttcacgataaacaggacg
ggcaagcaacaggcagagaaactcagtggtgctactctgtaccggaagctgagggactat
ctgatgacagaggaacggctgcaggagcatggataccctaggccacaccctgagagctca
ggtcgagccgtggtccacaacttcccagagaagaacaacgttgaccgtaagtctttacag
agcacctacaaacccttctcagtctgggggtggatccaatccttctcgaccagacacata
aaaaaaaaatgttcttccactaatctcttctcgttccaagcgtttgccaaggtgtgctgt
cgatgtggggcagagtataagatcaatgccaacggcaactgtgttcgcaaggaggagtgt
aatcaccactggggccgtctgcgcagacataaagtgtcgggaggctgggaaaccaactac
aactgctgctcaggaactgtgggctctcctggttgctccttgtctaagcaacatgttcag
gacggccgcaaagagtctttgggtggctacgttcagacctttgagaaacagctgcccccg
gatggcaactgtggagtctatgccctggactgtgagatgtgctacacaaagcagggtctg
gagctgaccagggtgactgttatcaactctgagctgaaagtcatctatgacacatttgtt
aaacctgaaagtaaagtggtagactacaacacacggttttcgggtgtaacggaggaggac
ctggagaatgccagcatcaccctgagagacgtgcaggcggtgatgctcaacatgttcaac
gctgaatccatcctcataggacacagcctggagagtgacctttttgccctcaaggtcata
cacagcactgtagtggacacagcgatcgtgttcccccatcgcctgggcttgccctacaag
cgggccctaaggaacctcatggcagaccacctcaaacgcatcatacaggacagcgttgaa
ggtcatgactccagtgaggatgcctgcgcctgcatggagcttatgatgtggaagatccga
gaagacgccaaggtgaagaggtga
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