Oncorhynchus tshawytscha (Chinook salmon): 112243139
Help
Entry
112243139 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1 isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112243139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112243139
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112243139
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112243139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
zf-B_box
ANCHR-like_BBOX
RING_XB3-XBAT31
zf-RING_UBOX
fn3
PRY
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
FN3_DSCAM-DSCAML_C
zf-RING_2
TRIM_CC
zf-RING_5
Pur_ac_phosph_N
Spectrin_Anc-1_2
Motif
Other DBs
NCBI-GeneID:
112243139
NCBI-ProteinID:
XP_042175916
LinkDB
All DBs
Position
LG03:72820944..72897390
Genome browser
AA seq
691 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILISHCSPNEPVQSISAFQCPTCR
YAITLNQRGLEGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERVAPDGTAMTSPSERVQ
CQFCEQDPPQDAVKTCVTCEVSYCDECLKATHPNKKPFTSHRLIEPMPDCHIRGLMCLEH
EDEKVNMYCVTDEQLICALCKLVGRHRDHQVAALSDRYEKLKRTPDCYLSERSEQEEADQ
EISTQTLDSNLSNLIKRNNELETLMGKLIQICQHVEGNASRQENKLLEECDLLMDVVQQR
RQIIATKINEGKAIRLRKLAQQIATCKQIIERSSSLITQADHTLREGDHARFLQTAKSIC
ERVSMATASSQILIPEINLNDTFDTFALDFTREKKMLEGLDYLTAPNPPIIREELCTASY
DTITAHWTSDDEFCVVSYELQYAIFTGQANVVSLCNSADSWMIVPNIKQNHYTVHGLQCG
TKYIFMVKAINQAGSRSSVPGKLKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETSSKKS
HNQDRFTSQGSYGVTGNVYIDSGRHYWEALIGGSTWFAVGVAYKSAPKHEWIGKNSASWV
LSRCNNSWVVRHNSKEMPIEPSPHLRRVGVLLDYDAGSLAFYDGAGSQHLYTFDITFAQP
VCPVFNVWNKCLTVLTGLPIPDHLEGTDCRD
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggaaacactggagtcggagctgacctgcccaatctgtctggagctcttcgaagacccc
ttgctcttgccctgcgctcacagcctgtgtttcaactgtgcccaccgcatcctgatctcc
cactgcagccccaacgagcctgtgcagtccatcagcgccttccagtgcccaacctgtcgc
tatgccatcaccctcaaccagaggggcctagagggactgaagcgtaacgtcactttgcag
aacatcatcgaccgcttccagaaggcttccgtgagcgggcccaactcccccagcgagact
cgccgtgagcgggtcgccccggacggcacggccatgacctcccccagcgagagggtgcag
tgtcagttctgtgagcaagaccctccccaggacgccgtcaagacctgtgtcacctgtgag
gtgtcctactgtgacgaatgcctgaaggccacccaccccaataagaagccctttaccagc
caccgtctgatcgagcccatgcctgactgccacatcaggggactcatgtgtctggagcac
gaggacgagaaggtgaacatgtactgtgtcacagatgaacagttgatctgtgccttgtgc
aaactggtcggtcggcatcgggaccaccaagtagccgccctcagcgaccgctatgagaaa
ctcaagagaactccagactgctatctcagtgagaggagcgaacaggaggaagcagaccag
gagatatctacgcaaaccttggactccaacctcagcaatctgattaagaggaacaatgag
ttggaaactctgatgggcaagttgatccagatctgccaacatgtggaggggaatgcatcc
agacaagagaacaagctcctggaagagtgtgacctcctgatggacgtggtacagcagaga
agacagatcatagccaccaagataaacgagggcaaggctatccgtctgcgaaagctagcc
cagcagatcgccacctgcaagcagatcatcgagagatcgtcatccctcatcactcaggca
gatcacaccctgagggagggagaccacgcccgcttcctgcagacagcaaaaagcatctgc
gagagagtgtccatggcgacagcatcctctcagatcctgataccagagatcaacctgaat
gacacctttgatacgtttgcgttggactttacaagagaaaagaaaatgctggaaggcttg
gattacctcacagcaccaaatcccccaataatccgggaggaattatgtacagcatcgtat
gacaccatcactgctcactggacatcagatgacgagttctgtgtggtctcctatgagctg
cagtatgccatcttcactggacaagccaatgtcgtcagtttgtgtaactcagctgacagt
tggatgattgtgcccaacatcaagcagaaccactacacagtgcatggactccagtgtggc
accaagtacatctttatggtcaaagctatcaaccaggcagggagtcgcagcagtgtacct
gggaagctcaagaccaacagtcagccgttcaagttggacccaaagtctgctcacaagaag
ctgaaggtctcccacgacaacctgacggtggagcgagacgagacgtcgtccaagaagagc
cacaatcaggaccgcttcaccagccagggcagctacggcgtcactgggaatgtgtacatc
gatagcgggcgccactactgggaggccttgataggagggagcacatggtttgctgtgggt
gttgcttacaagtcagcaccgaaacacgagtggatcggcaagaactcggcctcgtgggta
ttatctcgatgcaacaactcctgggtagtacgtcacaacagcaaggagatgcccatcgag
ccgtccccccacctgcgtcgcgtgggggtgttgttggactacgacgccggttccctggcc
ttctacgatggcgccggctcacagcacctgtacacgttcgacatcaccttcgctcagcca
gtgtgtcctgtgttcaacgtgtggaacaagtgtctgactgttctcacggggctgcccatc
ccagaccacctcgaggggacagactgccgggattaa
DBGET
integrated database retrieval system
