Oncorhynchus tshawytscha (Chinook salmon): 112243626
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Entry
112243626 CDS
T05605
Symbol
xrcc5
Name
(RefSeq) X-ray repair cross-complementing protein 5
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
112243626 (xrcc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112243626 (xrcc5)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
112243626 (xrcc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_N
Ku_PK_bind
Ku_C
VWA_2
VWA
Motif
Other DBs
NCBI-GeneID:
112243626
NCBI-ProteinID:
XP_042176006
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All DBs
Position
LG03:complement(80691454..80722836)
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AA seq
715 aa
AA seq
DB search
MARSAKTALVLCLDVGFSMSNSAPGQEPPFQQAKKVIQKFVQRQVFAENKDELGLVLFGS
DITKNNLAKDDQYQNISVHRQLMIPNFELLEEIQNDVHPGSQQADWLDALVVCMDLLQNE
TLGKKYERLNIVMLTDLNTPSSPDQLDIIIGNLKRAGITLQFFLPFPVDGGGSNPPHGGK
ALSREQQQGLEMTKQVMMSLDEEDGLEEVYTFSDAIEKLSVFKRVEKRPMAWPCTLTIGS
SLAIKIVGYKAVCEERPRKSWSVVDAQTHQKDDIKRDVVYCLNDDEETEVQKDDTIQGYR
YGSDIVPFSKVDQDQMKYKTDGKSFAVLGFTKQSMINRHQFVGTQVLKVFAPKDDEHAGV
ALSGLIRALDDLKMVAVVRYVYARNGNPQVGAAFPCIKEKYECLVYVQLPFMEDLRQYSF
PSLENNKKYTPSEDQLSAVDSLIDSMMLVEEDKDGVKKDLFKVNHIPNPQYQRLFQCLHH
RAVNPSAPLPPMDPWLTTALQRPLAVATRCQAPLETLKKKFPLKEVVKKKELKTSKELFG
NSTEEPDAKKAKVDEEEDFNLADITEGSITQVGSVDPARDFRTLIRQKSLPFGEVCQQLT
GRIEQLLGNKNMNYYIKCIPCIQTFREQSVQVGNADHYNSYIQSLKTSIPVRGLQEFWDM
LVQDALTLINKDEVDGSTFSSHDAKQFLTAGEKKEELVAAVVDDTGDVDDLLDMM
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgttcagcgaagacagcattggttctgtgtctggatgtgggtttctccatgtcc
aactctgccccgggacaggaaccgcccttccaacaggccaagaaagtcatccagaagttt
gttcagcgccaggtgtttgctgagaacaaagatgagctgggtctggtgctgtttgggtca
gacatcactaagaacaacctagctaaagacgaccagtaccagaacatctcagtacaccgc
caactcatgatcccaaactttgagctgctggaagagatccagaatgatgtgcaccctggg
agtcaacaggctgactggctggatgctctagttgtatgcatggacctgcttcagaacgaa
actctggggaagaaatatgagcgtctgaacatcgtcatgctcacagacctgaacacaccg
agcagtcctgaccagctggacattatcataggcaacctgaagagagccggcatcactctg
cagttcttcctacccttccctgtagatggagggggttccaacccccctcacgggggtaaa
gctctgtccagagagcagcagcaggggctggagatgaccaagcaggtcatgatgtctctg
gatgaagaggacggtctggaggaagtctacaccttcagtgatgctatagagaagttgtct
gtgtttaaacgtgttgagaagagacccatggcctggccctgtactctgaccatcggcagc
tctctggccatcaagattgttggctacaaagcagtatgtgaggagagacccaggaagtcg
tggtcggtggtagatgctcagacacaccagaaagacgacataaaaagagatgtagtttac
tgtctgaatgatgacgaagagaccgaggtacagaaggacgacaccatacaagggtatcgt
tatggcagtgacatcgtccccttctccaaagttgaccaggaccagatgaagtacaagaca
gatgggaagagttttgctgtgctgggcttcaccaaacagagcatgatcaacagacaccag
ttcgtggggactcaggtcctcaaggtgttcgcccctaaagatgatgagcatgcaggtgta
gctctctcaggtctgatccgtgctctggatgacctcaagatggtggcggtggtgaggtat
gtttacgcccgcaatggaaacccacaagtaggagcagccttcccctgtattaaggagaag
tatgagtgtctggtgtatgttcagcttccgttcatggaagatctgaggcagtacagcttc
ccttctctggagaacaacaagaagtacactccctcagaggaccagctgtcggcggtggac
tctctgattgactccatgatgttggtggaggaggataaggatggagtgaaaaaagacctc
ttcaaagtcaaccacatccccaaccctcagtaccagagactgttccagtgcctgcaccat
cgggcggtgaaccccagtgccccgctcccgcccatggacccctggctgactacagctctc
cagcgccccctcgcggtggccacccgctgtcaagcccccctggagacactgaagaagaag
ttccctctgaaggaggtggtcaagaagaaggaactgaagaccagcaaggagctgtttggg
aacagcactgaggagcctgatgccaagaaggccaaagttgacgaggaagaagactttaac
ctggctgacatcacagagggaagcatcacacaggtgggtagtgtagatccagcacgggat
ttccgcactctgattcgccagaagagtcttccgtttggagaggtgtgtcaacagctgact
ggcaggatagagcagttgcttggcaacaagaacatgaactactacataaagtgcatcccc
tgtatccagaccttcagagagcagtctgttcaggttgggaatgctgatcactacaacagc
tacatccagtctctgaagaccagtattcctgttagaggccttcaggaattctgggacatg
ctagtccaagatgccctgaccctgatcaacaaggacgaagttgacgggagcacgttctcg
agtcatgatgccaagcagttcctgactgcaggggagaagaaagaggagctagttgcagct
gtggtggacgatacaggagatgtggacgacttgctggacatgatgtga
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integrated database retrieval system
