Oncorhynchus tshawytscha (Chinook salmon): 112243772
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Entry
112243772 CDS
T05605
Symbol
tarbp1
Name
(RefSeq) probable methyltransferase TARBP1 isoform X1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
otw03016
]
112243772 (tarbp1)
03036 Chromosome and associated proteins [BR:
otw03036
]
112243772 (tarbp1)
Enzymes [BR:
otw01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
112243772 (tarbp1)
Transfer RNA biogenesis [BR:
otw03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
112243772 (tarbp1)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
112243772 (tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
112243772
NCBI-ProteinID:
XP_042173762
UniProt:
A0AAZ3PWB8
LinkDB
All DBs
Position
Unknown
AA seq
1673 aa
AA seq
DB search
MSSILINALLSSCHDPDTLFNTLRWPTDSWPDTERVEALTTFIDGIGKLPQSDTSDDGDK
VAFSIAKRDIFLRKVESIIWTQCLPLLLKVSNGDGACKGKRVPDGRAEITIAVCRLLSVC
INTLCDTAVSGRVARAVLPSFQLPDGETEEELPGQGEGRLGIDVAIEALSVILPALSSNE
ELTTSILSSALSCIKTLPDALVSKITVRLIFTLLNCYSEDGIASKLRFILEDLCSWHKSD
SSNTDSPVVTERALLCLTTLSDYLFSPAKLQQHTLPQSLSYTRPDPRRSLQFWRILQDGL
THKDNVSRKRALYLLKRCVALSEDEAVEFPSSSVSSEDNEEIIFRWAPDRCKLLREFWED
YALVMETLEENQIHVVRPVLNRIHTLIQTAANDSQGVSLFHPSWLLGVYQRMFHSENKSV
MREGVDHLLELQVLRRPAFSLAFSQFILGPFMDVMSESSLFHRTAGQSVGECPELGVKLQ
VFMVTFFSSLPQENRGPVLLQLVQRLGSQHWCAVPILFLSRALSHLPPCPLLGPDGLQAL
REVLRCTMITHQVLLRGAAQCFLLNSALSLTDVTLVTLDDVFSLLVHFRADESLRRGTPL
WNQLCDWLADSEGSFRPCVRESADGTSTSPEGETVRGYIQQQMELFLRVPASTDQTDSVP
DPGEAELLAKAILLCVDIEGRTQRSGGEQTTGVSGGMDSLLRPLLDTLSRLHTNVYLPLR
KTDKSLQLLLRLLQLTPARHTPAAVLQLTPARHTPAAVEKEQEDSVTVSMETMVLGVVEP
IQEFILRRLSGELQELCDVERAELYLSVLKEVVLMYSVLEWNHSKVQEAYFPRLLRYVLR
TLEADQIPSVAGQVSRAVAMASLAMTCEVAALGVFNLQSETTILLVHLSSYFYSPAPPPA
PPLSLVNFNQTLLKPPTAAQSTGVSEQGPLLKDWGRMAAHFIRDQWTCLGYWRRIGPPGP
LELPRASGSLQAAIEALSLLPSGLVLPVLDFMASMLPQVALSEEALCVEAVTVSWKLVLG
LSSNPHDFWPTLQGFVTMAFHHSLLELTKEQAPGLTVTLQQIAVELMDLSQAKTGVFNVL
IQHCCHTWLPSDPGSEGQSQSDAMFSSALLHLDILAEACVYGPVFRRDQRLIQEVQVYVE
RLGEECAANTAVPSDNRDDQFPRVCVVAFLSRLQPSNQLHERLMEELVLCLLKKDEAISK
SKQRYYSNSLQHRVKNRVWQTLLMLLPKLRGEFVGTVLGRVFEAGFVSNQASVKYLIEWK
MVLILVQYPEHIDRLWACFSVDQEKTKTSVCTFLSVLVHLNIIMPQLKEKAVQWRKALDV
ILQWCFSHNFSVRLYALLALKRVWGLEGARAEAEEGAGGADGLGGLATVVKACLHQAEAM
QSTGNASKNWSRIQDHFFFGVFHPVRDYSVETIFYTFPSLSEVFEDEWIPPWKFEKLVDF
SQSASLPLRNPVPDLSQIQPGDWIQQDKGDQDGVERWAEVQKKMTPWRLGIQEQEPELGL
VPQQRAARLGKLHSALLVVASLIDKPTNLGGLCRTCEIFGASALVLDSLRHVSDKHFQAL
SVSSELWLPLLEVKPVELADFLQLKKREGYCIVGVEQTANSQSLKDYKFPVKTLLLLGNE
REGIPANLLQLLDVCVEIPQQGVIRSLNVHVSAALLVWEYTRQYLPSTGVKSD
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctattttaatcaatgcccttttatcaagttgccatgatccggatactttgttt
aacacgttgcgctggccaactgactcgtggccggacacagaaagagtagaggcactgaca
acgtttattgatggaattggtaaactaccccagtctgacacatctgacgatggcgacaaa
gttgccttttcaattgcaaaaagagacatctttctacgaaaagttgaatcgatcatttgg
acacaatgtttaccacttctcttgaaagtctctaacggagacggggcgtgcaaaggtaaa
cgtgtgccagatggaagggctgaaatcaccatcgctgtgtgcaggcttctttctgtctgc
atcaacacactgtgtgacacggcagtttcggggcgagtcgcccgcgctgtcctgccatcc
ttccagctgccagacggggagacagaggaagagcttcccggccagggtgaggggcggctg
ggtatcgacgtggctatcgaagccttgtcagtcatcctacccgctctctcatccaacgaa
gaattgaccacgtcgatcctctcatctgccctgtcctgtatcaagacgttgccggatgct
ctggtctccaaaatcaccgttcggcttattttcactctcctcaactgctacagcgaggat
gggatagcgagtaaactccggttcattttagaggatttgtgtagttggcacaagagtgac
agctcaaacacggactcacctgtggtgacagaacgcgccttgctgtgtttaacaactctc
tcggactatctcttctctccggctaaactacagcaacacacccttcctcaaagtctgagc
tatactcgacctgaccctcgtcgttctctgcagttctggaggattctacaagatggactg
acgcacaaagacaacgtgtcccggaaacgggcgttgtacctgctgaaaaggtgtgtcgct
ctgtcagaggatgaggcggttgagtttccaagcagttcagtgtcaagtgaagataatgag
gagatcatattcagatgggccccagacagatgcaagctgctcagagagttctgggaggac
tatgccttggttatggagacactggaggagaaccagattcacgtggtccgccctgtgctc
aacaggatccatacgttgatccaaacagcagccaatgatagtcaaggcgtcagtctgttc
cacccgtcatggctgctgggtgtgtaccagcgtatgttccacagtgagaacaagtccgtc
atgagagagggagtggatcacctactggaactccaggtgctccgacgccctgccttctcc
ctggccttctcacagttcattctgggtcctttcatggatgtgatgtctgaaagctccctc
tttcacaggactgcaggacagagtgtaggagagtgtcctgagctgggagtcaagctgcag
gtcttcatggtcacgttcttcagcagcctgccacaggagaacagaggtcctgtgttgctg
cagcttgtccagcggctaggttctcaacactggtgtgctgtccccatcctcttcctctct
cgggccctgtcccaccttcctccctgccctctcctgggccctgatggcctgcaagctctc
agggaggtgctccgctgcactatgatcacccaccaggtgctactgagaggagctgcccag
tgtttcctgctgaacagtgccctctccctgacagatgtgaccttagtgacattggatgat
gtgtttagtttgctggtgcatttcagagcagacgagtctctacgtagaggaacacccctc
tggaatcagctgtgtgactggctggctgacagtgaaggcagcttcaggccctgtgtcaga
gaatcagctgatggtaccagtacttctccagagggagagactgtgagaggctacatccaa
caacaaatggagctcttcctcagagtcccagctagcacagaccagacagacagtgtccca
gacccaggagaggcggagctgctagccaaggccatcctactgtgtgttgacatagagggg
aggactcagaggtctggaggagagcagactactggtgtcagcggtgggatggactcgctc
ttacgccccctactggacacactgagcaggctccacactaatgtctacctgccgctacgc
aagacagacaagagcctgcagctgctgctacgactactgcagctcacaccagccagacac
acccctgctgcagtactgcagctcacaccagccagacacacccctgctgcagtagagaaa
gaacaagaagacagtgtgacggtctccatggaaacaatggttctgggcgtggtggagccc
attcaggagtttatcctccgaagactgagtggagaacttcaggagctatgtgatgtagag
cgtgctgagctctacctgtcagtgctgaaggaggtggtgctgatgtacagtgtgttagag
tggaaccactccaaggtacaggaggcctatttccccagactcctcagatacgtcctgagg
accctagaagctgaccagatcccctctgtggcgggtcaggtgtccagggccgttgccatg
gcgtcgttggccatgacctgtgaggttgcagcgttgggagtgttcaacctccaatcagag
accacgattctactggtccatctgtctagctacttctactcccctgctccacccccagcc
cctcctctctctctggtcaacttcaaccagaccctgctgaaacctccaactgcagctcag
tcaacaggtgtttcagagcagggtcctctcctcaaggactggggccgtatggcagctcat
ttcatccgggaccagtggacgtgcctgggatactggaggagaataggcccacccgggccc
ctggagctccccagggcgtcagggtccctccaggctgctatagaggctctgtctctgcta
cccagtggcctggtactgcctgtactggacttcatggcctccatgttgccacaggtggcg
ctgtctgaggaggccctgtgtgtagaggctgtgactgtctcctggaagctggtgctggga
ctgagcagtaaccctcatgacttctggcccaccctgcagggctttgtgaccatggccttt
caccacagcctgctggagttaacaaaggagcaggcacctgggctcactgttactctacaa
cagatagccgttgagttgatggacctctcccaggccaagaccggtgtattcaacgttctg
atccaacactgctgccacacctggctgccctctgacccaggaagtgaaggccagagccaa
tcagatgccatgttctccagtgccctactgcaccttgacatcctggctgaggcatgtgtg
tatggacctgtgttcaggagggaccaaaggctgatccaggaggttcaggtctatgtggag
aggcttggagaggagtgtgctgctaacactgcagtccccagtgataaccgggatgaccag
ttcccacgtgtgtgtgtcgtggcgttcctcagccgcctccagccctccaatcagctgcat
gagagactgatggaagaactggttctctgcttgctgaaaaaggatgaggccatatcgaag
tcaaaacagcgttactatagcaactccctgcagcatcgtgtcaagaacagggtgtggcag
acactactgatgctgctgcccaaactgagaggggagtttgtaggtactgttctgggtcgt
gtgtttgaggcaggtttcgtcagtaaccaggcctcagtcaagtacctgatagagtggaag
atggttctaatcctagtccagtatcctgaacacatagaccgactctgggcctgcttcagt
gtggatcaggagaagaccaagaccagtgtctgtaccttcctgtctgtgttggtccacctc
aacatcatcatgcctcaactcaaggagaaggcagtacagtggcgtaaggccctggatgtt
atactccagtggtgtttcagccataacttcagtgttcgtctgtacgccctgctggccctg
aagagggtgtggggtctggagggggcgagggccgaggccgaggagggggccgggggggcg
gatgggctcggggggctggccaccgtcgttaaggcctgtctgcaccaggctgaggccatg
cagagtactggaaatgccagtaagaactggagcaggattcaggaccacttcttctttggc
gtctttcatcctgttagagactatagtgtggaaaccatattctacacattccccagccta
tcagaggtgtttgaggacgagtggattccgccctggaagtttgagaagttggtggacttc
tcccagagtgcatctctcccgttgaggaaccctgtccctgacctaagccagattcagcct
ggagactggatccagcaggataaaggggatcaggatggtgtggagcgctgggccgaggtc
cagaagaagatgaccccctggaggttggggatccaggaacaggagccagagctgggtctg
gtgccccagcagagagcagcacgcctgggcaagctgcacagtgccctcctggtggttgcc
tcgctcatagacaagcccaccaacctgggaggtctgtgtaggacgtgtgagatctttggg
gccagtgctctggtgttggacagtcttcgccacgtcagtgataaacacttccaggccctg
agtgtctcctctgagctatggctccccctactggaggtgaagcccgtagaactagctgac
ttcttgcagctgaagaagagggagggctactgcattgtgggagtggagcagacagccaat
agtcagagtctaaaggactacaagttccctgtgaagactctgttactgctgggtaatgag
cgtgagggtatcccagctaacctgctccagctgctggatgtgtgtgtggagatccctcag
caaggtgtcatccgttccctcaacgtacacgtgagcgccgccctgctggtgtgggagtac
acccgccagtacctgccctctactggagtgaagtcagactga
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integrated database retrieval system
