KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112244612
Entry
112244612         CDS       T05605                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 4B
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03250  Viral life cycle - HIV-1
otw04144  Endocytosis
otw04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    112244612
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    112244612
  09143 Cell growth and death
   04217 Necroptosis
    112244612
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:otw04131]
    112244612
   03400 DNA repair and recombination proteins [BR:otw03400]
    112244612
Membrane trafficking [BR:otw04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    112244612
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    112244612
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_5 AAA_14 RuvB_N AAA_22 IstB_IS21 AAA_18 AAA_25 DUF815 AAA_2 AAA_33 RNA_helicase nSTAND3 AAA_17 AAA_24 PhoH Mg_chelatase AAA_7 AAA_28 Parvo_NS1 ResIII bpMoxR NACHT DUF5906 Viral_helicase1 Sigma54_activat MCM
Other DBs
NCBI-GeneID: 112244612
NCBI-ProteinID: XP_024268139
LinkDB
Position
LG01:21955309..21960790
AA seq 438 aa
MANNNLQKAIDLASKAAEEDKAKNYEEALRLYQHSIQYFLHVVKYEAQGDKAKQSIRAKC
AEYLDRAEKLKEYLKKKDKAPPAKPVKESGSDDKGNDSDEGEGDPEKKKFKNQLSGAIVM
EKPNIKWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKA
VATEANNSTFFSISSSDLVSKWLGESEKLVKNLFSLARENRPSIIFIDEIDSLCGSRSEN
ESEAARRIKTEFLVQMQGVGNDNEGVLVLGATNIPWTLDSAIRRRFEKRIYIPLPEGHAR
SFMFKLHLGSTPNELTESDYVTLGKKTEGYSGADISVIVRDALMQPVRKVQSATHFKRVQ
GSSWNHPNLVVDDLLTPCSPGDPDAIEMTWMDVNGEKLMEPIVCMADMLRSLHNTKPTVN
EQDLDKLKKFTEDFGQEG
NT seq 1317 nt   +upstreamnt  +downstreamnt
atggctaataacaatttacagaaagcaatagatcttgcaagcaaggctgcagaagaggat
aaggctaaaaactacgaggaagctctccggttgtaccagcattccattcaatacttcctt
catgttgttaaatatgaggcccagggagacaaggccaagcagagcatcagggcaaagtgt
gcagagtacctggaccgagcagagaagctgaaggaatacttgaagaagaaggataaggcc
cctccagccaagcctgtcaaggagtccggctctgatgacaaagggaatgacagtgatgaa
ggtgaaggtgacccagagaaaaagaagtttaaaaatcaactctcaggggccatcgtcatg
gaaaagccaaacatcaagtggaatgatgtagctgggcttgagggtgcaaaggaggccctt
aaagaagctgtcatcttgcccatcaaattccctcacctcttcaccggaaagcgaactcca
tggagagggatcctgctgtttggccctcctggtacagggaagtcttatctggccaaggct
gtggctacagaagccaacaactctaccttcttctctatctcctcctctgacctggtgtcc
aagtggctgggggagagtgaaaagttggtgaagaacctgttcagcctggccagggagaac
aggccctccatcatcttcatcgacgagatagactctctgtgtggctccaggagtgagaac
gagagtgaagcagcccgccgcatcaagactgagttcctggtccagatgcagggtgttgga
aatgacaatgagggagtcctggttctaggagccacaaacatcccctggacactggactct
gctattaggagaaggtttgagaagcggatctatatccctctgcctgaggggcacgcccgc
tccttcatgttcaagctgcatctgggctccacccccaatgagctcactgaatcagactat
gtgaccctgggtaagaagacggaaggctactctggagcagacatcagcgtcatcgtaagg
gacgccctcatgcagccagtcaggaaggtgcagtcggccactcacttcaaacgggtccaa
gggtcatcatggaaccatcccaacctcgtggtagacgatctcctgaccccatgctcacca
ggagatccagacgccatagagatgacctggatggatgttaatggggagaaactcatggag
cccattgtttgcatggctgatatgctgaggtcactgcacaacaccaagccaactgtgaac
gagcaggacttggacaaactcaagaagttcacagaggactttggtcaggaaggctaa

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