Oncorhynchus tshawytscha (Chinook salmon): 112244619
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Entry
112244619 CDS
T05605
Symbol
samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03250
Viral life cycle - HIV-1
otw04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
112244619 (samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
112244619 (samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112244619 (samhd1)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
112244619 (samhd1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_2
SAM_1
HD
PDEase_I
HD_assoc_2
Motif
Other DBs
NCBI-GeneID:
112244619
NCBI-ProteinID:
XP_024268116
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Position
LG28:45165445..45187974
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AA seq
628 aa
AA seq
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MDRRKRSREDLPTADHFNTPEERVYAGLSLDGDLRQWSVEDTCRYLRLEGLGIWEEKFRE
HQITGVGLRYLTETHLENMGIGPLGTRLQILHCLRKLWQIAAETKVFNDPIHGHVEMHPL
LVRIIDTPQFQRLRHIKQLGGTYFVFPGASHNRFEHSIGVGYLAGSLVQELNERQPELFI
SRRDILCVQIAGLCHDLGHGPFSHMFDGMFIPKVRPESKWNHEEASLAMFDHLVCENALE
PAMKEHGLVLPDDLVFIKEQIAGPQNTVPLSQGLSQPASEPWPYKGRPEEKSFLYEIVAN
KRNGIDVDKWDYFARDCFHLGIQNNFDYRRFLKFARVCEVNGKKHICTRDKEVGNLYDMF
HTRNCLHRRAYQHKVGNIIETMITEAFLKADPHIQIQGSGGKMFTISTAIDNMEAYTKLT
DHVFEQILYSSSSELAEAREILQNITCRRLYKCVGQTQAEKRMEVSQEKLLDWAGCVARS
RPQNDLQNVTLQPGDFVVNIINMDWGMKEKNPIDKVRFYCKNDPTKAYRIRKDQVSKLLP
ERFAEQLIRVYCKKTDERTMEAAKKNFVQWCMDMNFSKPQDGDVIAPELTPLKASWAHNN
DSDEEDSQGGRGWDAVNGGQEKAKTRLF
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggataggcgaaagcgctccagagaagatttaccgacagcggaccatttcaataccccg
gaggagagagtttatgccgggctgtcgctggacggggacttaaggcagtggagtgtcgag
gacacttgcagatacctgcgtctggaagggctcgggatatgggaggagaaattcagagag
catcagataacaggagtggggttacgataccttacagagacacatctggagaatatgggc
atagggcctcttggcacacggctgcagattctgcactgcctgaggaagctgtggcagatt
gcagcagagaccaaggtgtttaatgaccccatccatggccatgtagagatgcatcctctg
ctggtccgtatcatcgacacccctcagttccagaggctccgccacattaagcagctggga
ggaacatactttgtcttccctggagcctcccacaaccgcttcgaacactccataggggta
ggctacctggcaggttcgctggtccaggagttgaatgagagacaaccagagctcttcatc
tctcgtagagacatattgtgtgtccagatcgccggtctctgtcacgacctgggtcatggt
cctttctcccatatgtttgatgggatgttcatccccaaagtgcgtccagaatctaagtgg
aatcacgaggaggcgtccctggccatgtttgaccacctggtgtgtgagaatgccttggag
ccggcgatgaaggagcatggcctggtccttcctgatgacctggtcttcatcaaggagcag
attgctggaccacagaacactgtccccctcagccagggactaagtcagccagccagtgag
ccgtggccatataagggccgaccagaggagaagtccttcctctatgagattgtggccaac
aaaaggaacggcatcgatgtagacaagtgggactacttcgccagggactgcttccacctg
ggtatccaaaataactttgactaccgtcgctttctcaagtttgcccgtgtgtgtgaggtg
aacgggaagaagcacatctgcacccgagacaaggaagtgggtaatctgtatgacatgttc
cacacacgcaactgcctgcatagaagggcctaccagcacaaggtgggcaacatcatagag
acaatgatcacagaggcctttttaaaggcagacccccacatccagatacaaggttcaggg
ggaaagatgttcaccatctccacagcaatagacaacatggaggcctacactaaactcaca
gaccatgtgtttgagcagattctgtactcgtcatcctctgagctggctgaggccagagag
atcctccaaaacatcacctgcagacgcctctacaagtgtgtgggacagactcaggctgag
aagcgaatggaggtttcacaggaaaagctcctggactgggcaggctgtgtggcgaggtcc
aggcctcagaatgaccttcaaaatgttactctgcagccaggggactttgttgtcaatatc
atcaacatggactggggtatgaaggagaagaaccccatcgacaaagtgcgcttctactgt
aagaacgacccaaccaaagcttaccggatccgcaaggaccaggtgtccaagctgctgcca
gaacggtttgctgagcagcttatcagggtctactgtaagaagaccgatgagaggaccatg
gaggcagctaagaagaactttgtccagtggtgcatggatatgaacttctccaaacctcag
gatggagacgtgatcgcaccagagctcacccctcttaaggcaagctgggcacacaacaat
gacagtgatgaagaggatagccagggaggaagaggctgggatgcagtcaatggtggacaa
gagaaggcaaagaccagactcttttaa
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