Oncorhynchus tshawytscha (Chinook salmon): 112244674
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Entry
112244674 CDS
T05605
Name
(RefSeq) homeobox protein SIX5
KO
K19474
homeobox protein SIX5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112244674
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
112244674
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
112244674
NCBI-ProteinID:
XP_024268171
UniProt:
A0A8C8GCP7
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Position
LG13:complement(50212116..50220944)
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AA seq
946 aa
AA seq
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MASLSLESAEQSENSTEESTQEAALVKEETDPDEVSEQLLKTFQNSALSFSTDQVACLCE
ALLQAGNVDRLWRFLSTIPPSAELLRGNETLLKAQALVAFHREEFKELYAILESHDFHPS
NHGFLQDLYLQARYKEAERSRGRSLGAVDKYRLRKKFPLPKTIWDGEETVYCFKEKSRNA
LKECYKGNRYPTPDEKKNLAKVTGLSLTQVSNWFKNRRQRDRTPSGTNSKSESDGNHSTD
DEGDDISDKPEDIVGSTASISLSGTPCSTGGQLFLNGAGGFLTASHPLLINGGSLISGAG
GGVIINGLTLSDGHTVTLSPISANSPLLFNGAQVISKSSEDMGLEGQGVMAMEAQPSSAI
SLPLTEDLKTDNVSLTNPSTIPTLDFINVPEGMVLKAEDIQTVSASSLSSPSTFSPTSLS
SLVLTQNGCLSDTLTLPVSMSSPGVVISSPVVGLPSQQGEFVVFATAGSQLTPSSSICQV
VSSYSYSTPQVFSLPQVVPSIQGVPVSQLVQHTPGGQVSQCPQLIPVSPLTSSLPQGTLS
QFQAHQTLNIAPRLAQPLPQHHSSSSTLGEGTTILSLSQLPNGQLPQGLTLQLGEQTSAT
IPTLTQIQSPLGHPQIISQSKETIPGQLVPLSLPQLVPVSSTGQLSFPQVGPSTPSLSGS
GGAFQILTSAPGGGMTQGPFRINQLGPLQTVGPPTSMAPGVQLLNSGVIQLPSASPGNLL
YGGSPILSYQNGKLILTIPAGIQFGSLPMKPVPEASNHHTNGVGPGLTLNPVSQPTPTLL
PVSTSVPTSNTLQTSPLCFINSSPLYCTPEMGVPTNQPLSTTSPHTLDLSATHTPPNALT
PESMLSLSPMCSGVTPTTQLSHTTWSPVPLSTSASLTMFDVRGKGDLPEDPPLLDLPGGE
ALLLGSTSPEQDVDRGSPLGDPVEMDGDPKILTQLQSVPVDDGLGL
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atggcttccttgtctttggagtctgcagaacaatccgagaatagcacggaggagtctacc
caagaggccgctctggtaaaagaggagacggatccggatgaagtttcagaacaattgctc
aaaactttccagaactccgcgctcagcttttcgacagatcaagtagcatgtctgtgcgaa
gcccttctacaggcgggcaatgtggatcgcctgtggagattcctatcaaccatccctcct
tcggcggagctgctacgtggcaacgagacgctgctcaaggcccaggcactggtcgctttc
caccgggaagaattcaaggagctgtacgcaatattggaaagccacgacttccaccccagc
aaccatgggttcctgcaggacctctacttgcaggcgcgctacaaggaggcggagaggtcc
cgaggtcgtagcctgggcgccgtggacaagtatcggcttcggaagaagtttcccctgccg
aaaacaatctgggatggagaggagactgtgtattgtttcaaagagaagtctcgcaatgca
ctgaaagaatgttacaaaggcaacaggtatcccactccagacgagaagaaaaacttggcc
aaagtgactggactctccctcacgcaagttagcaattggttcaagaaccgacggcagaga
gaccgaaccccgtccggtaccaacagcaaaagtgagtccgatggtaaccacagcacagat
gatgagggtgatgacatctcagacaaaccagaggacattgtgggctccacagcctccatc
tccctctctggcaccccctgcagcactggaggccagctcttcctcaacggggcaggtggg
ttcctcaccgcctcccaccccttactcatcaacggtggctccttgatctccggggcaggg
ggtggcgtcatcatcaacgggctgaccctgagcgatggtcacacggttaccctcagcccc
atatcggctaactcacctctgctcttcaatggagcgcaggtcatatccaagagcagtgag
gatatgggtcttgagggccagggggttatggccatggaggcccagcccagctctgccatc
tccctccctctgacagaggatcttaagacggacaatgtaagcctgacgaacccctcaacc
atccccaccctggacttcatcaatgtcccagaggggatggttctcaaagctgaggacatc
cagacagtctctgcttcctccttgtcttccccctcaacattctcccccacctccctttcc
tccctggttctgactcaaaatggctgcctctccgacaccctcacccttccggtctctatg
tcctctccgggcgtcgtcatctccagccctgtagtgggcctccccagccagcagggggag
tttgtggtgtttgccacggctggttctcagctcaccccctccagctccatctgccaggtg
gtgtcctcctacagctactccaccccacaggtattctccctgcctcaggtggtgccctcc
atccagggtgtccccgtatcccaactggtccaacacacacctggaggccaggtgtcccag
tgtccccagttaatccctgtgtcccccctcacctcctctctcccccagggcaccctttcc
cagttccaggcccaccagactctgaacatcgccccccgcctcgcccaacccctcccccag
catcatagtagttcctctacgttgggagagggaaccaccatcctctccctttcccagctc
cccaacggacagctcccccagggactcacactccagctgggtgaacagacctcagctacc
atccccactctgacccagatccagtccccactaggccatcctcagatcatctctcagtcc
aaagagacaatcccaggccagttggttcccctctccctgccccagctggtgcctgtctcc
tccacgggacaactctccttccctcaggtgggcccgtccaccccttctctatctggatct
ggtggagcctttcagatcctaacctcggcccctggaggtgggatgactcaggggcccttc
aggataaaccagctgggacccctccagactgtaggccccccgaccagcatggctcctggt
gtccagctcctcaactctggggtcattcagctcccctccgcctcgccagggaatctcctc
tatggtggaagccccatcctgagttaccagaacggcaagctgatcctaactatcccagct
ggcatccagttcggcagcctgcccatgaaacccgtccctgaggcttctaaccaccacacc
aacggagtaggccctggactcaccctcaaccctgtcagccaacctacacctaccctcctc
ccagtgtccacctccgtcccaacgtccaacaccctccagacgtcccccctctgcttcatc
aactcctctccgctctactgcactcctgagatgggtgtccccaccaaccagcccctctcc
accacctccccacacaccctggacctctctgccacccacactcctcccaatgccctcacc
ccagagagcatgctctccctcagccccatgtgcagcggagtgacccccaccactcagctc
tcccacacaacctggagccctgtccccctctccacctctgccagcctgactatgtttgat
gtccgtgggaagggagatctgcccgaggacccgcctctgctggacctacctggaggcgag
gccctgctactaggcagcacctctccagaacaggatgtggacagggggtcgccgttgggg
gacccagtggagatggatggagaccccaagatcctcacccagctacaatcagtccctgtg
gatgatgggttggggctgtaa
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