Oncorhynchus tshawytscha (Chinook salmon): 112244701
Help
Entry
112244701 CDS
T05605
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112244701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112244701
03036 Chromosome and associated proteins [BR:
otw03036
]
112244701
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112244701
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112244701
PBAF complex
112244701
GBAF(ncBAF) complex
112244701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT
Chromo
BRCT_2
Motif
Other DBs
NCBI-GeneID:
112244701
NCBI-ProteinID:
XP_042167227
UniProt:
A0A8C8EKE2
LinkDB
All DBs
Position
LG03:18250557..18267224
Genome browser
AA seq
1039 aa
AA seq
DB search
MATAATAAGGTGSGGPAAGPVGVGTAVGRKKDGGPSSKYWESAETVSQIDSVRQWIGKHY
KKYVQADSPSNKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPTKTFLDFKAGGALCHILG
STYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKTLVQNNCLTRPTVFLVPDMEQKQANK
LKDIIKRHQGSITEDKSKATHHIYPSLTQQEDEEWLRPVMRKDKQVLVHWGMYPDSYDTW
VSTSDVEGDVEDPPTSEKPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKTVSFRQRIFPK
EEESSRTPDRKERKANAAGKKRRRSPSPPTTPAESRKKGGKKGNPGSHWKRRGHRGEDEE
EEEDLTKDMEDPSPVPSMEEVTLPKNVNSKKDSENTPVKGGAVADLDDLEDDSVLSGGKE
EEEQGKAEVNRLIDSSEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKSK
SPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDAE
SRPLPMGPPPTPHFNVLADTPSGLTPMHHRPPQIPSGQQMLNFPEKGKDKPSDMQNFGLR
NDLYSKKNPKSKGTSGGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLR
LPIEDPYLENSESSLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFS
RVREEVPAELVEAHVKKVQEAARSTGKVDPAYGLESSGIAGTAPEEPEKTEPAETEKMDT
DSDSQQPDKAESKDEAEKPGESAEKLAEGEKVKSEMAEPSEREEGESEGGEGKATADKDK
EEAMETSEEDKEEQGTMEEEEEERKKLEPDGGEGNIATAAAAALASAATKAKHLAAVEER
KIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLKYA
EMKARQQMEQQQASAAAQGPAPHHGPPGPGMHHGPPHHGPPPAMHSGHGPPAPGSTPWVP
TTRNRQDQWEGPVSPCQGA
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcaactgcagcgggtggaacgggttcagggggacctgcagccggccct
gtgggcgttggtactgcggtgggccgtaagaaagatggaggtccttcgtcgaaatactgg
gagagcgcagaaacggtctctcagatcgattcggtgcgccaatggatcgggaaacactac
aaaaagtatgtacaggcagactctccctccaataagtccctggcagggctggtggtgcag
ctgcttcagttccaggaagatgctttcggacggagggtcaacaaccctgccctcaccaag
ttacctaccaagaccttcctggacttcaaggcagggggtgctctgtgtcatatcctgggc
tccacctacaagttcaagagcgagcagggctggcgtaggtttgacctgcagaacccctcc
aggatggacaggaatgtggagatgttcttgaatgtagagaagaccctggttcagaataac
tgcctgactcgaccaaccgtgttcctggtgcctgacatggagcagaagcaggccaataag
ctgaaggacatcatcaaaagacaccagggctctatcacagaggacaagtctaaggccacc
catcatatctacccctctctaacccagcaggaggatgaggagtggctgcgtccggtcatg
cgtaaggacaagcaggtgctggtgcactggggcatgtacccagacagttatgacacctgg
gtgtccaccagtgacgtggagggggatgtggaggacccacccacctctgagaagccctgg
aaggtgcatgctaagtgggtcctggacaccgatgccttcaacgagtggatgaatgaggaa
gactatgaggtggacgagaacaagaagactgtgagcttccgccagaggatcttcccaaag
gaggaggagtcttcccgtacacccgatcgcaaggagcgcaaggccaacgccgccgggaag
aagaggaggcgctcgccatctcccccgaccaccccagccgagtcccgcaagaagggtggc
aagaaggggaaccctgggtctcactggaagcgtcgtggccaccgtggcgaggatgaggag
gaggaagaggacctgaccaaggacatggaggacccctcgcctgttcccagcatggaggag
gtcactttgcccaagaacgtgaactctaagaaagacagcgagaacaccccagtgaaggga
ggggcagtggcagatttggatgatctggaggatgattctgtgctctctggaggcaaggag
gaggaggagcagggcaaggccgaggtcaaccgcctcatcgactccagcgaggacaacgtg
accgagcagacccaccacatcatcatccccagctacgccgcctggttcgactacaactgt
atccacgagattgagaggcgtgcactgccagagttcttcaacggcaagaacaagtccaag
tcccctgaaatatacctggcctaccgtaacttcatgatcgacacgtaccggctcaacccc
caggagtacctgacctccacctcctgccgcaggaacctgacgggagacgtgtgtgccgtc
atgagggtccatgcattcctggagcagtgggggctggtgaactaccaggtggatgctgag
agccgccccctccccatgggccccccgcccaccccccacttcaacgtgctggctgacacc
ccctctggcctgacgccgatgcaccaccgccccccacagatcccctctggccagcagatg
ctcaacttcccagagaagggcaaagacaagccctctgacatgcagaactttggcctgcgt
aatgacctctactccaagaagaaccccaagagtaaaggaaccagcggcggccgggagtgg
accgagcaggagactctgctcctattggaggctctggagatgtacaaggacgactggaac
aaggtgtcggagcacgtgggctcgcgcacccaggacgagtgtatcctgcacttcctgcgt
ctgcccatcgaggacccctacctggagaactctgagtcgtccctgggccccctggcctac
cagcccgtacccttcagccagtcaggcaaccctgtcatgagcaccgtggccttcctggcc
tccgtggtggacccccgtgtggcctccgccgccgccaaggcagccctggaggagtttagc
cgtgtgcgtgaggaggtgccagcagagctggtggaggcccatgtgaagaaggtgcaggag
gcggcccgcagcacgggcaaggtagaccccgcctatggcctggagagcagcggcatcgca
ggaaccgcccccgaggagcccgagaagaccgagccagcagaaaccgagaagatggacaca
gactccgactcccagcagcctgacaaggctgagtctaaggatgaggcagagaagcccggt
gagtctgctgagaagctggctgagggagagaaggtgaagagcgagatggccgagccgtcg
gagcgggaggagggggagagcgagggaggagagggcaaggctacagcagacaaagacaag
gaggaggccatggagacctcggaggaggacaaggaggagcagggaacgatggaagaggag
gaagaggagaggaagaagctagagccggacggaggggagggtaacattgccactgctgcc
gctgctgccctcgcctcagctgccaccaaggccaagcacctggcggcggtggaggagaga
aagatcaaatctctggtggctctgctggtggagactcagatgaagaagctggagatcaag
ctcagacactttgaggagctggaaaccatcatggaccgagagaaagaggctttggagttg
cagaggcagcagctgctgacggagcgccaggccttccacatggagcagctgaagtatgct
gagatgaaggcccgccagcagatggagcagcagcaggccagtgcagcggcccagggcccc
gcaccccaccatggccccccagggccaggcatgcaccacggacccccccaccacggaccc
cctcccgccatgcactctggacacggccccccggccccgggttccaccccatgggtcccc
accacccgcaacagacaggaccaatgggagggcccggtcagcccatgccagggcgcatga
DBGET
integrated database retrieval system
