Oncorhynchus tshawytscha (Chinook salmon): 112244826
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Entry
112244826 CDS
T05605
Name
(RefSeq) neurofascin-like isoform X1
KO
K06757
neurofascin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112244826
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112244826
Cell adhesion molecules [BR:
otw04515
]
Immunoglobulin superfamily
L1 family
112244826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
Bravo_FIGEY
V-set
Ig_DSCAM-DSCAML_C
Ig_5
Ig_4
C2-set_2
Ig_VEGFR-1-like_5th
Ig_6
BiPBP_C
Dicty_REP
DUF3792
Mucin
Motif
Other DBs
NCBI-GeneID:
112244826
NCBI-ProteinID:
XP_042155193
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All DBs
Position
LG02:complement(43483490..43641789)
Genome browser
AA seq
1361 aa
AA seq
DB search
MLAQGGPWALSVISLVLLLWQEVSAIDVPLDSKIQQDLKQPPTIMKQSLKDYIVDPRDNI
IIECEAKGNPVPTFSWRRNGKFFNVGKDPRVTMRKRSGTLEISFRSGGRPEDYEGEYQCF
ASNIFGTALTNKILLRVSKSPLWPKEVLEPVVVGEGSPLVLACNPPPGLPPPLTFWMDSA
MMPITQDKRVSMGLNGDLYFSNVLAKDSHTDYSCNARFLFTHTIQQKNPFTLKVQTKEPY
NDTSSVNSTDPYGGRKVAETTPNFLSPTGTDSSRMVMRGEKLKLECIASGVPTPSIKWFK
KGGDLNQKVKLDNFNKTLRIDSVSEEDAGEYMCMANNQIGSIRHSIYVQVKAAPYWLDQP
SNLVLAPDENGRLVCRANGNPKPHIQWLVNGGPIDSNSTLPNPSRTVAGDTIMFRSVQIG
SSAVYQCNASNDHGYLLANAFISILDMAPRMLGPKNQLIKVIENNRTFLDCPYFGSPLPE
LRWFKNGQGSGLDGGHYRVYINGTLEIKRARAEDQGTYTCVANNILGTEENQVRLEVKEP
TRIVRAPEHQSAIRGTMARFDCRVKSDLTLPITVTWLKDDKPLSLGSRLKKDEDSLSIHN
VHEGDEGTYTCTVKTEIDQDTASARLTVSEDASLSSVLPTDRPDSPMDLELSDAKERNIR
LTWIHGDDHNSPVTLFVVQFEEDRWESGKWQNLSSYPGDVNTVILELSPFVNYQFRVIAV
NSVGQSLPSLPSQRYQTSGAPPDAIPRGLKGWGTKKNNMEISWEPLLDTERNGPNLHYSV
WWRRKDTGEEWSNVTTVGAKHIVHDTETYVPYEIKLRAVNDFGLGGESNIIIGYSGEDKP
TAPPTDLRVSKIDSTKVNVHWTPVDPSTVLGEFKEYRVYYWREGSMVKGLRVNKEKKTKG
FYSTVAQPTGILTDLQPYSHYRIYMVVANNRYEGPPSNHVEFRTKEGVPEAPKFFKIIQR
STDVIHLEWDKPLEPNGILIGYKLNYQTVNGSRVGLMQMQSFLPNVTTYTLHLPERAIRY
KFYLAALTQVGAGEVYAEESPHFTNEEDFFSSVEPTDVSVSTTFPPPPPTTTAATTTIST
STTTPPTTTTTTTTTTTTTTTTTTAATTATTPVLVTSTKQAHTNVLVGMAPGSVIWNLTV
EPNSNYANVSWNHNFPAGSSEFQLEFTLDSNGSMSSVPVNQPPIKLAGLIEGAKYHLRVY
SNEYHSISSNVVTFETSAAYSKDQVDIATQGWFIGLMCAIALIILILLIVCFIKRSRGGK
YPVREKKDLPLDAVDQKGEDGSFDYHSDEDNKPLQGSQNSLDGGVKESDDSLVDYGEGGD
GQFNEDGSFIGQYTVKKDKDETEGNESSEATSPVNAIYSLA
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgttggcgcagggcgggccttgggccctgtctgtcatatcactggtcctgctgctgtgg
caagaagtgtctgctatcgatgttcctctcgattcaaagatccagcaggacctgaagcag
cctcccaccattatgaaacagtcgttgaaggactacattgttgatcccagagataacatc
atcattgagtgtgaggccaaggggaaccccgtgccaacgttctcatggcgacggaacggg
aagttcttcaatgtggggaaggatccgcgggtgacgatgcggaagcgctcaggaacgctg
gaaatcagcttccggagcggagggaggccagaggactacgagggggaataccagtgtttt
gcctccaacatctttggaacggcgctgactaacaagatcctactacgagtgtccaagtct
cctctgtggcctaaggaggtgttggagccagtggtagtgggtgagggatctcccctggtc
ctggcctgtaaccctcctcctggtctgccccctccgctcaccttctggatggacagcgcc
atgatgcctataacccaggacaagcgtgtgtccatgggtctgaatggagacctgtatttc
tctaatgtgctggctaaagactcccacacagactacagctgcaacgcccgattcctcttc
acacacactatccagcagaagaaccccttcacactcaaagtgcagaccaaggagccgtat
aatgacacttcctctgtcaactccactgacccgtatggtggtcgtaaggtagcagagacc
acacctaacttcctctcccccacggggactgacagctcgaggatggtgatgagaggagaa
aagctaaagctggagtgtatcgcttccggagttccaactcccagtataaagtggtttaag
aaggggggagacctgaaccagaaggtgaaactagacaacttcaataaaactctgcgtatc
gacagtgtgtcagaggaggacgcaggggagtacatgtgtatggccaacaatcagatagga
agcatccgacactccatctacgtccaggttaaagcggctccctattggctggaccagccg
tccaatctggtgctagcgccggatgagaacggtcgtctggtgtgtcgggccaatggaaac
cccaaacctcacatccagtggctggtcaacggagggccgatcgatagcaatagcaccttg
cccaaccctagcagaacggtggcaggtgacaccatcatgttccgctctgttcagatcggc
agcagcgctgtgtaccagtgtaatgcatccaatgaccatggttacttgctggctaacgca
ttcattagcatactggacatggcccccagaatgctgggtcctaagaaccagctgataaag
gtgatagagaacaacagaaccttcctggactgtccctattttggctcgccacttcctgag
ctacgctggtttaagaatggtcaaggaagtggtctggatggtggtcactatcgggtctac
atcaacgggaccctggagatcaagcgtgcacgggctgaggaccaggggacctacacctgc
gtggccaacaacatcctgggcacggaggagaaccaggtccgcctggaggtcaaagagccg
acacgtattgtcagggctccagagcaccagtcagccatcagaggcaccatggctcgtttc
gactgccgggtcaaatccgacctcaccctgcccatcactgttacctggctgaaggatgac
aagcctctctccctgggatcgaggttgaagaaggatgaggattctctgtccatccacaat
gtccatgagggagatgagggaacatacacctgcactgttaaaacagagattgaccaagac
actgcctcagcacgccttactgtgtcagaggacgcctccctgtctagtgtcttgcctaca
gaccgtcctgactctcccatggacctggagttgtctgacgctaaagaacgcaacatacga
ctcacctggatacatggagatgatcacaacagccccgtcacattgttcgtggttcagttt
gaggaggaccgttgggagtcaggcaagtggcagaacctgtctagttatcccggagacgtc
aacactgtcatcctggagctctctcctttcgtcaactaccagttcagagtcatcgctgtc
aattctgtgggccagagcctccccagcctcccctcgcaacgataccagaccagcggagcc
cctccagatgctatccctagaggcctgaaaggctggggcaccaagaagaacaacatggag
atcagctgggagcccttgttggacacagagcgaaacggccctaacctgcactactcggtg
tggtggcgacgtaaggacacgggggaggaatggagtaatgtgactacagtgggtgcaaag
cacattgtacacgacacagagacctacgtaccctatgagatcaaactgcgggctgtgaat
gactttggactgggaggcgagtccaacatcatcataggatactctggggaggacaagccc
acagcccctcccactgacctgcgagtgtctaagattgacagcaccaaggtcaatgtccac
tggaccccagtagatcccagcactgtattgggagagttcaaggagtacagggtgtactac
tggcgtgagggcagcatggtgaagggtctgcgtgtaaataaagagaagaagactaaaggg
ttctacagtaccgtggcccagcctactggcatactgacagacctacagccatacagccac
taccgcatatacatggtggtcgccaacaatcgctacgagggaccgcctagcaaccatgtg
gagttccgtaccaaggaaggagtgccagaagctcctaagttctttaagatcatccagcgg
agtacagatgttatccacctggagtgggacaaacccctggagcctaacggcattctgatt
ggatataaactcaactaccagacagtgaacgggtcacgtgtaggccttatgcagatgcag
agtttcctacctaacgtgacaacatacacactccacctgcccgaacgagccatccgctat
aagttctacctggcggccctcacacaggtgggagcaggggaggtctatgctgaggagtct
ccacacttcaccaatgaggaagactttttcagctcagtcgagcctacagatgtgtccgtg
tctacaactttcccaccacctcctcccactactaccgctgctactacaaccattagtacc
tcaactactactccccctaccactactaccactactaccactactactactactactact
actaccactactgctgcgactactgctaccactcctgtgctggttaccagcaccaagcaa
gcacatacgaatgtgttggtaggcatggctcctgggagtgtgatctggaacctgacggtg
gagcctaacagtaactacgctaacgtcagctggaaccacaacttcccggccggcagcagc
gagttccagctagagttcacactggacagcaacggcagtatgtcaagcgtacctgtgaac
cagccgcccattaagctggcgggactgatcgaaggggccaagtaccacctgagggtgtac
tccaatgaataccacagcatctccagcaatgttgtcacctttgagaccagtgcagcctac
agtaaagaccaggtggacattgctacccagggctggttcatcgggctgatgtgtgcaatt
gctctcatcatcctcatccttctcatcgtctgcttcatcaagaggagtcgcggaggcaaa
tacccagtgcgagagaaaaaagatctccctctggatgcagtggatcagaaaggagaggac
ggatcatttgactaccacagcgacgaggacaacaagcctctgcagggcagccagaactct
ctggacggcggggtgaaggagagtgacgacagcctggtagactacggcgagggaggggat
ggccagttcaacgaggacggctccttcattggccagtacacagtcaagaaggacaaggac
gaaacagagggcaatgaaagctcagaagccacctcacccgttaacgccatctactccctg
gcataa
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