Oncorhynchus tshawytscha (Chinook salmon): 112244896
Help
Entry
112244896 CDS
T05605
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112244896 (upf3b)
03015 mRNA surveillance pathway
112244896 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112244896 (upf3b)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112244896 (upf3b)
mRNA cycle factors
P-body specific factors
112244896 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
112244896
NCBI-ProteinID:
XP_024268529
LinkDB
All DBs
Position
LG21:20351324..20359663
Genome browser
AA seq
480 aa
AA seq
DB search
MKEDKENTRPIEKIMEIKCEDTEKTEKPKPEKKEAMTKIIIRRLPPSITKEELEDQLQPL
PEVDYLEFFSNDSSMYPHVFARAYINFKNQEDIVLFRDRFDGYVFIDNRGQEYPAIVEFA
PFQKIAKKRSKKKDAKSGTIDEDADYKKFLEIYNGDDEKFTSTPETLLEEIEAKTKELVA
KKTTPLLDFLKNKQRIREEKKEERRRRELERKRQRDEERRKWREEDRRKRKEAEKFKKGD
KTAEKDKDQAKEEPKIKLLRKPDRGDDVDVDKPKEKSKKPEKDKMKDDRAPGGSDMKKRQ
NHESREDRGSRKTDEDGHKEGHRDGHKDFRERDIERYRDRERDRERERRQKEKERIRRQD
EDRRRRRERHDGENSYRKREDEGKKEKGDRVWEKRKGENAGDSVSHTSSHTDKPKKSEET
LREEKAKRDRLRNKDRPAIQLYQPGARNRGARGGGGGGESHAGERKSESESKRSQEKGDE
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaggacaaggaaaacactcgtccgattgagaaaattatggagataaaatgcgaa
gatactgaaaaaacagagaagccaaagccggagaagaaagaagcaatgacgaagatcatt
atccgacgtctgcctcctagcataaccaaggaggaactggaggatcaattgcagccactt
ccagaagtggactacctcgaatttttctccaatgacagcagcatgtacccccacgtcttc
gccagagcatacatcaacttcaagaatcaggaagatattgtccttttcagagaccggttt
gatggatatgtgttcattgataatagagggcaggagtatccagccattgttgaatttgct
ccttttcaaaagattgccaaaaaaaggagtaagaaaaaggatgccaaaagtggaacaatc
gacgaagatgctgactacaagaaattcctggagatttataatggtgatgatgaaaagttt
acatccactcctgagactctactggaggaaatcgaggctaaaacaaaggagctagtggct
aagaaaacgactcccctcttggacttcttgaagaacaaacagagaatccgtgaggaaaag
aaagaagagaggaggagacgagagctagaacggaagcgccagcgggatgaggaacgtcgg
aagtggagggaggaggacaggaggaagcgcaaagaagccgagaagtttaagaaaggggac
aaaactgcagagaaagataaagaccaggcaaaggaggagccaaaaatcaagctcctgaga
aaaccagaccggggagatgacgtggatgtggataagcctaaagagaagtcaaagaaacct
gagaaggacaagatgaaagatgacagagctccagggggttctgatatgaagaagcgccaa
aaccatgaaagcagggaggataggggatcacggaaaactgatgaagatggacacaaagag
ggacatagagatggacacaaagacttcagagagcgagacatagaaagatacagggaccgc
gaacgagaccgggagagggaacggcggcagaaagagaaggagcgcatcagacgacaggat
gaggatcgacgaaggaggagggaacggcacgacggagagaactcgtacagaaagcgagaa
gacgaagggaaaaaggagaaaggagatcgtgtctgggaaaagagaaagggcgagaatgca
ggagactctgtaagccatacttcaagccataccgataagcctaaaaagtcagaagaaacc
ctgagggaggagaaagctaaaagagatcgtttaagaaacaaggatcgtcctgccattcag
ctttaccagccaggtgctaggaaccgaggagctcgaggtggtggaggaggaggagaatct
catgctggggagagaaagtcagagagtgagagcaagagatcccaagagaagggagatgaa
tga
DBGET
integrated database retrieval system
