Oncorhynchus tshawytscha (Chinook salmon): 112244926
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Entry
112244926 CDS
T05605
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112244926
03015 mRNA surveillance pathway
112244926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112244926
03041 Spliceosome [BR:
otw03041
]
112244926
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112244926
Spliceosome [BR:
otw03041
]
Complex C
Other components
EJC/TREX
112244926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Aconitase_C
Motif
Other DBs
NCBI-GeneID:
112244926
NCBI-ProteinID:
XP_024268585
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All DBs
Position
LG11:complement(25099263..25104475)
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AA seq
691 aa
AA seq
DB search
MAVAVGSLQAQLEKAKESLKNVDDNIRKLTGRDPNELRPGQVRRPTIPGVGGGRGRGINL
LRRGLSDISGGPGGPPVKQRDIEGALLRLAGDQRGRRDSRHDSDAEDDDDVKKPVLQSSV
VATSKERTRRDLIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESNVATDRQKKRIEIEQK
LEVQAEQERKKVEGERRELFEERRAKQTELRLLEQKVELAQLQEEWNVHNTKIVKYIRTK
TKPPIFFLPGRMCSATQKLLDESQKKMNVMFEERREAFAEHLNKMEARPRRQSQRDTALG
KDLKKEDREEGKPTGQVVKVTGNRFDVEMEEEDEATIEEGGGEGVKRKEDRKKKPVEKVG
EQESKKGGTKADEMEEAEEDSQDTRIVEFRDVGEQMEGTALVREAEGQAGDGDQKMEDSP
VEVGNEKGVEEQQPVKAEKEPLHGQDLTAVSDGQEKSIEIQPNEDEEPRTEVATPLLSEC
NPRVEVSDVTSMAPEVQIPLLETGTDPEPLTTEQSQEADQGAIKQTTNAQPAQAQDDAAP
KELAPPSKEASRGRKKSKDKKGGGGGRSSSSSSSSSSGSSSSGSSGSSSSGSSSRSSSSS
GSSSSSSSRSRSRGRKDKKRRRPSERDRERKKAVVERSHKSSKGSGRESKGSKDKSSKSD
RKRTTSEGSRSGKRSSRGDRDRKSDRKEKRR
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcagtgggatctttgcaagcccagcttgagaaagcgaaagagagtttgaaa
aatgtagacgataatattcgtaaattaactggtcgggatcctaatgaattgagacccggc
caagttagacggccaaccatcccaggtgttggaggaggtagggggcgaggaatcaacttg
ttgaggcgtggactctccgacatcagcggtggaccaggaggacccccagtgaaacagagg
gatattgaaggggccctcctgaggctggccggtgaccagagagggaggagagattcacgc
catgacagcgacgctgaagatgatgacgatgtcaaaaagccagtgttgcagtcatcagta
gtagctacctccaaggagcgtacacgtcgagacctgatccaggatcagaccatggatgag
aggggaaaacaaaggaatcgacgcatgtttggcctgttgatgggaacattacagaaattc
aagcaggaatctaatgtggcaacggataggcaaaagaaacgcattgagattgaacaaaaa
ttggaagttcaagctgaacaagagcgcaaaaaagtagagggcgaaagacgagagctcttt
gaggagaggcgtgccaagcagacagagctgagactgttggaacagaaagtggagcttgct
cagttgcaagaggagtggaatgtgcacaacacaaaaattgtcaagtacatccgcacaaag
accaagccacccatcttctttctgcctgggaggatgtgctcagccactcagaagctctta
gatgagtctcagaaaaaaatgaatgttatgtttgaggagagacgcgaggcatttgctgaa
catctgaataagatggaggctcggcctcggcgccagtctcagagggacaccgctctgggt
aaggacctgaagaaagaagatcgagaggagggtaagcccacgggtcaggtagtcaaagtg
acaggtaacaggtttgatgtggagatggaggaggaagatgaggcaacaatagaggaaggg
gggggtgagggtgtaaaacgtaaggaggacagaaagaaaaagccagtagagaaagtcggg
gagcaggagtctaagaagggggggactaaagcagatgagatggaggaggctgaggaagac
agtcaagacactagaatagtggagtttagagatgtgggggagcagatggagggtactgca
ctagtgagggaggctgaagggcaggccggggacggggatcagaagatggaggatagtcca
gtggaggtaggtaatgagaaaggagtagaagagcagcaaccggttaaggcagaaaaggag
ccccttcacggtcaggacctcacagctgtgtcagacggccaggagaagagcattgaaata
caaccaaacgaagatgaagagccacgtacagaagtggccacacccctgctctcagagtgc
aaccctcgtgtggaagtctctgatgtaacatctatggctcctgaggttcagatcccccta
ctggagactggaacggatccagagccgctcacaaccgagcagagccaagaggctgatcaa
ggtgccataaagcagaccactaatgcccagcctgcccaggcccaggatgatgcggctccc
aaggagctggcgcccccgagcaaggaagccagtaggggacgtaagaagtcaaaggacaag
aagggaggtggtggtggcagaagcagcagtagctcatctagcagctcctctggctcctcg
tccagtgggagctctggctcctcctctagtggctcctccagcaggagcagctcctccagt
ggcagctcctccagctcttctagcaggagccgcagccgagggaggaaggacaagaagcgt
aggaggccatccgagagggacagggagaggaagaaggcagtagttgagaggagccacaag
tcatccaagggcagtggtcgtgaatccaaaggttccaaagataagagctccaagtctgac
aggaagaggaccacctctgaaggcagccggtcagggaagaggtcctctcgcggcgacagg
gatcgcaagtcagataggaaggaaaagaggcgttaa
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