Oncorhynchus tshawytscha (Chinook salmon): 112245136
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Entry
112245136 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase subunit gamma-1
KO
K02332
DNA polymerase gamma 1 [EC:
2.7.7.7
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112245136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
otw03032
]
112245136
03029 Mitochondrial biogenesis [BR:
otw03029
]
112245136
Enzymes [BR:
otw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
112245136
DNA replication proteins [BR:
otw03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase gamma complex (mitochondrial)
112245136
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial DNA replication factors
Mitochondrial DNA polymerase
112245136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNApol_Exo
DNA_pol_A
Motif
Other DBs
NCBI-GeneID:
112245136
NCBI-ProteinID:
XP_024268892
LinkDB
All DBs
Position
LG06:39307754..39319571
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AA seq
1207 aa
AA seq
DB search
MQHLLHLLPFRGPLSSVLRRRLCCTSYSTQQPHSLQGSLPPETRLNPLNIQMLSQNLHEQ
IFRGAEQEYEDEKVERSIRHLQRHQLWGKEASLLPGVEFQLPHMYGENINDHFRLLAQKQ
SLPYLEAASELQQAPLPPMPQDWVWEVGWMRYGPGGEARRVDFPDEAGLVFDVEVCMAEG
HCPTLAVAVSPTAWYSWCSKRLIEERYSWSSQLTPADLIPMETPTNSSRPPGGQWRERLI
VGHNVSFDRSYIKEQYLLKGSKARFLDTMSLHMAISGLTGFQRTLWMANKHGKRRGLLEV
KAHMKKVGRPGRKEGPMIGSWDWVNISSINNLADVHALYVGGEPLQKEAREIFVKGSMAD
VRNNFQDLMQYCALDVQATHQVFCEQLPLFMERCPHPVTFAGMLEMGGCYLPVNQNWGRY
LEDSQDTFEELQREMKKSLMSLADDACQLLQDDRYKEDAWLWDVEWDVQEFKQKKVTVSK
SKRSKAEAEPAPSTPLRDWDQDPGPPTEEEIAGTCPSREALERLKKMVSRLPKRRQHLPG
HPGWYRKLCVKMSEEEEESWSPGASLISLAMRVTPKLMGLTWDGFPLHYTEQHGWGYLVP
GRRDNLMEPHGGEEDAMGPVCPHRAIESVYREYCEQKGKEQPRCLDNGLSDDLMLTDSTL
WQTVEELGRLESVSEEENGGRVTRKSNKEMQDINSLPGESHCPYHHGNGPYNDVNFPGCW
FFKLPHKDGNDNNVGSPFSKDFLSKMEDGTLRAGRGATNATRALEINKMISFWRNAQKRI
SSQKVVWLRKGELPRSVSRHEEYDEEGQYGAILPQVITAGTVTRRAVEPTWLTASNARRD
RVGSELKAMVQVPPGYHLXGADVDSQELWIAAVLGEAHFGGMHGCTAFGWMTLQGKKSQG
TDLHSRTADTVGISREHAKVFNYGRIYGAGQPFAERLLMQFNHRLSQPEAASKARQMYAL
TKGLRRYRLSEEGEWLLKELDVEVERDEDGSISPQDLRRITRLASQSSRRRKWEVAGQRL
WAGGTESEMFNKLESIALSAQPATPVLGCRISRALEPQAVKDEFITSRVNWVVQSSAVDY
LHLMLVAMRWLMEEHDIDGRFCVSIHDEVRYLVRSEDRYRAALALQITNLLTRCMFTHAL
GMQDLPQSVAFFSAVDIDRCLRKEVTMDCVTPSNPTGLERKYGLPQGEALDIYQIIDITK
GSLGKGR
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgcaacatcttctgcatcttcttcccttccgggggcctctctcctctgtcctacggagg
agactatgttgtacctcctactccacccagcagccccactccctccagggctccctcccc
ccagagacccgcctgaaccccctcaatatccagatgctgtcccaaaacctccatgagcag
atattccgcggcgcagagcaggagtacgaggatgaaaaggtggagcggagcatcaggcac
ctacagaggcaccagctgtggggaaaagaagcctccctgctgcctggtgtggagttccag
ctgccccacatgtacggggagaacataaacgaccacttccgcctgctggcccaaaagcag
agccttccctacctggaggctgccagtgaactccagcaggccccgctgccacccatgccc
caggactgggtgtgggaggtgggctggatgcgctacgggccgggtggggaggccagacgg
gttgacttcccagacgaggcaggcctggtgtttgacgtggaggtgtgcatggcagaggga
cactgtcccacgctggctgtggctgtatcccctactgcctggtactcgtggtgcagcaag
cgtctgatagaggagagatactcttggtccagccagctgacccctgctgacctcatcccc
atggagaccccgaccaactccagccgccctccagggggccagtggagggagagactgatt
gtgggtcacaacgtcagctttgaccggtcttacatcaaggagcagtacctgctgaagggg
tccaaggctcgtttcctggacaccatgagtctccacatggccatctctggtctgactggg
ttccagcgcacgctgtggatggccaacaagcacggcaagaggcgtggcctcctggaggtc
aaagcgcatatgaagaaagtgggccgacctgggcggaaggaagggcccatgatcggctca
tgggactgggtgaatatcagcagcatcaacaacctggctgatgtgcatgctctgtatgtg
ggaggggagccactgcagaaggaggccagagagatctttgtgaagggcagcatggctgac
gtcaggaacaacttccaggacctgatgcagtactgcgctctggacgtccaggccactcac
caggtgttctgtgagcagctgcccctcttcatggagaggtgccctcatccagtaacattt
gcagggatgctggagatgggcgggtgctacctacctgtcaatcagaactgggggaggtac
ctggaagactctcaagacacgtttgaggagctgcagagagagatgaagaagagtctgatg
agtcttgcggatgacgcttgtcaactgctacaggacgacaggtataaggaggacgcctgg
ctttgggatgtggaatgggacgtccaggagttcaagcagaagaaggtgaccgttagcaag
agtaaacgctcaaaggctgaggctgagccggcacccagcacaccattgagagactgggat
caggacccaggtccccccactgaggaggagatagcaggaacgtgcccaagtagggaggct
ctggagaggctgaagaagatggtcagcaggctgcctaagaggagacagcacctgcctgga
catcctgggtggtatcgtaagttgtgtgtgaagatgtcagaggaggaggaggagagctgg
tcgccgggggccagcctgatcagtctggctatgcgggtgactcccaagctgatggggctg
acgtgggacggcttccccctgcactacacggagcagcacggctggggctacctggtgcct
ggccgcagggacaacctgatggaaccccatgggggggaggaggacgccatggggcctgtg
tgtccccacagggccatagaaagtgtgtacagagaatactgtgagcagaaaggtaaagag
cagcctaggtgtctggacaacggcctctctgatgacctcatgttaaccgacagcacactg
tggcagacggtggaagagttgggtcgcttggaaagtgtgtcagaggaggagaacggtggc
agggtgacgaggaagagcaataaggaaatgcaggatattaattctctaccaggtgagagt
cactgtccctatcaccatggaaacggaccttacaacgatgtcaactttccgggctgctgg
tttttcaaactcccacacaaggatggaaatgacaacaacgtgggcagccccttctccaag
gacttcctgtccaagatggaagacggcaccctgagagcggggcggggggccaccaacgcc
acccgggctctggagataaacaagatgatctctttctggaggaatgcccagaaacgcatc
agctctcagaaggtggtgtggctgaggaaaggggagctccctcgcagtgtcagcaggcat
gaagagtatgatgaggaggggcagtacggcgccatcttgccccaggtcatcaccgcagga
accgtcacccgcagggctgtggagccaacatggctgactgccagcaacgctcggcgggat
cgagtgggcagtgagctgaaggccatggtacaggtgccccctgggtaccacctgngtggg
gcggacgtggactcccaggagctctggatcgctgccgttctgggagaggcccacttcggt
ggcatgcatggctgcacagcgttcggctggatgaccctgcagggcaagaagagccagggc
actgacttgcacagccgcacggctgacacggtgggcatcagccgcgaacatgccaaggtc
ttcaactacggacgcatctacggcgctgggcagccttttgccgaacgtctgctcatgcag
ttcaaccaccgcctcagccagccagaggccgccagcaaggcccggcagatgtatgccctc
accaagggcctacgcaggtaccgtctgtctgaggagggtgagtggctgctgaaggagctg
gatgtggaggtggagagggacgaagacgggagcatctccccgcaggatctccgccggatc
acaagactggcctcccagagttctcggaggaggaagtgggaggtggcgggccagcgtctg
tgggctggtggtacggagtcagagatgttcaacaagctggagagcatcgccctctcagcc
cagccagccacccctgtcctgggctgcaggattagcagagccctggagcctcaggctgtc
aaggacgagttcatcaccagcagggtgaactgggtggtgcagagctcggcggtggactac
ctccacctgatgctggtggccatgcgctggctgatggaggagcacgacatcgacggacgc
ttctgcgtcagcatccacgacgaggtacgctacctggtccgcagcgaagaccgctaccgg
gcagcactggccctgcagatcaccaaccttctcacaagatgtatgtttacccatgcactg
ggtatgcaggacctgccccagtcagtggccttcttcagtgccgtggacattgaccgctgt
ctgaggaaggaggtgaccatggactgtgtgactccctccaaccccacagggctggagcgc
aaatacggcctcccacagggtgaggctctggacatataccaaatcatagacatcaccaaa
ggctctctggggaaagggagataa
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