Oncorhynchus tshawytscha (Chinook salmon): 112245297
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Entry
112245297 CDS
T05605
Name
(RefSeq) protein NEDD1 isoform X1
KO
K16547
protein NEDD1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112245297
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112245297
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centrosome formation proteins
Pericentriolar materials (PCM)
Other PCM proteins
112245297
Microtubules and associated factors
gamma-tubulin ring complex
112245297
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Gamma-tubulin complex components
112245297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40
WD40_WDHD1_1st
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
EIF3I
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
WD40_RFWD3
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_WDR75_1st
PEP5_VPS11_N
Beta-prop_Vps41
eIF2A
WD40_like
Beta-prop_IFT122_1st
Beta-prop_SPT8
KNTC1_N
Frtz
SdiA-regulated
Motif
Other DBs
NCBI-GeneID:
112245297
NCBI-ProteinID:
XP_024269084
LinkDB
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Position
LG06:39074610..39090612
Genome browser
AA seq
769 aa
AA seq
DB search
MRWLASQLEPWGLSGPLSWLQMQECPHAGSPPIAGCNCTLLKLFVTIPVFRQTIHRTISQ
GNQEQVTVAMEEVTHLVSSGDCVKIWDSASMTVLEQFNPHSATHPVAQVCWSSNNQYLVS
ASSIGDKLVVSSLKSAPIPVVELAEGKKQTRVSLNSTSQYLVSGGLDNSVNIWDLKAKRL
HRTLKDHKEEVTCVSFNGSDSYIASGSTSGDIILHSITTNLSSNAFGHGINQPIHDLMYS
VVKRSLLGSVSDSGSVVLWDANTQKELHVFDGAHKAPASGLAFSPANDLLFVTVGLDKKI
ICYDTSSKIILRNMCVESPLTAIDFTPDGAGLVVGSTQGRLYLYDLRNLSSPTKTAVAHK
TSITSLRFQSSQSRHLKSSKIASSKSSRAQTSKRISARLGSTYLPVTTPSSSSTSNPPSS
LPAHHAVERGDGQAQGTGTHREEEGQLGVDCLPSLDKFSSVGRNSLDIFSPVKDDYKAHR
MSGDASGGIKGKAISLDMFSREGQQSMEKFSKVGRNSLDIFSPVREDYKTHGMTADESNV
KKGNNLDFLPTYSGGPPHHKTPLGTLGGGCCYSPLPVFQTPSPIKEELAMPPAPAQTDTQ
DSKRYEKGSGSSLEGEGPTTLTSSAQTSYSQPAPPFFTTEPGLRTNELQAQLSYNTPLNG
VLPIIVPVSLAVASSLSERIVEAVGTEGGGAPLTSLQIQFIRNMIHETLEDFRDACHRDI
VNLQVEMVKQFYIQLNEIHGLIEKYSVNDSLVEEIEKLREENKRLRESY
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgagatggcttgcttcccaactggaaccctggggacttagtgggccgctgtcctggctg
caaatgcaggaatgcccacatgcaggatcgccgccaattgcgggttgcaattgcacacta
ttgaaattgtttgtgacaattccagtctttcgacagacaattcataggacaatttcacaa
ggaaatcaggaacaagtaaccgttgctatggaggaggtgacgcatctggtgtcgtcgggt
gactgtgttaagatctgggactcagcctccatgacagttttggaacagtttaacccgcac
agcgctacacaccctgtggcccaagtgtgctggagcagcaacaatcagtatcttgtaagt
gccagcagtataggagacaagctggtggtatccagtctcaagtccgctcctatcccagtg
gtggagcttgcagaggggaaaaagcagacacgtgtgagtctgaactcaacgtcccagtac
ctagtgagtggggggcttgataactctgttaacatctgggacctgaaggccaagaggctt
catcgcaccctcaaggaccacaaagaggaggtgacgtgcgtgtccttcaacggcagtgac
agctacatcgcctcgggctccaccagtggtgacatcatcctgcacagcatcaccaccaac
ctgtccagtaatgcatttggacacggcatcaaccaacccatccacgacctgatgtactct
gtggttaagcgctccctgctgggcagtgtgtcagatagcggctcggtggtcctgtgggac
gccaacactcagaaggagctgcacgtgttcgatggagcccacaaggcccctgcctcaggc
ctggccttctctcctgccaacgacctgctctttgtcaccgttggcctggacaagaagatc
atctgctatgatacctccagcaagattattctccgcaacatgtgtgtggagtccccgttg
acggccattgacttcactccagatggggcagggctggtagtgggctccacccagggcaga
ctgtacctgtacgacctgcgcaacctcagctcccctactaagactgccgtggcacacaag
acctccatcaccagcttgcgcttccagagttcccagagcagacacctcaagtccagtaaa
atagcttcaagcaagtcttccagggcccagacaagcaagaggatctcagccaggctgggt
agtacctacctaccagtaactacccccagctccagctccacctccaatcccccctctagc
ctgcctgcacaccatgcagtagaaagaggggatggacaagcccagggcacaggcacacac
agagaggaagagggccagctgggtgttgactgcctgcctagtctggacaagttcagcagc
gtgggtagaaacagcctggacatcttctcccccgtaaaagacgattacaaagcccacagg
atgagtggtgatgcttctggtggaatcaaagggaaagcgatcagtttggatatgttctcc
agagaagggcagcaaagcatggagaagttcagcaaagtgggacgcaacagtctggacatt
ttctctcctgttagagaggattacaaaacccatggaatgactgcagatgaatcaaatgtg
aagaaaggaaacaatctggacttcctccctacctactctggtggtcccccacaccacaag
actcccctgggcacccttggaggagggtgctgttacagccccctacctgtcttccagacc
ccttcaccaatcaaagaggagctagccatgcctcctgcaccagcgcagacagacacacag
gactcaaaaaggtatgagaagggcagtggttccagtctggagggtgaaggcccaaccacg
ctcacgtcatcagcccagacctcatacagccaaccagcaccgccgttcttcaccactgaa
cccggcctgaggaccaatgaattgcaggcccagctgagctacaacacgcccctaaatggt
gtgctgcccattattgtaccagtgtctttggcagtggcatcctcgctatccgagagaata
gtggaggctgttggaacagagggtggaggggctcccctcacatctctacagatccagttc
atccgcaacatgatccatgagaccctggaagacttccgggacgcctgccaccgagacata
gtgaacctccaggtggagatggtcaaacagttctacattcagctgaacgagatccatggt
ctgatcgagaagtactctgtcaatgactcgctggtggaggagatcgagaagctgagggag
gagaacaagcgactccgagaaagttactga
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