Oncorhynchus tshawytscha (Chinook salmon): 112245305
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Entry
112245305 CDS
T05605
Name
(RefSeq) cadherin-related family member 5-like isoform X1
KO
K16505
cadherin-related family member 5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112245305
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Cadherin related
112245305
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Fibulin_C
TgpA_N
Motif
Other DBs
NCBI-GeneID:
112245305
NCBI-ProteinID:
XP_024269096
LinkDB
All DBs
Position
LG06:34015915..34028535
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AA seq
1016 aa
AA seq
DB search
MDPRGVCGGSQKGQSGQGLWCERLGLGPEHGAVLRKVLDPRLGAVIKTWCWIEAVMMQPQ
RPCLSRWRVLLWSTLLLLSPLRVTGHPYTIVEDGLPWEAGSGDQTVRRENWNPCLEGQDV
FSTVRENSMMGELIIELNTELTANDVVWNLTGEDADWFFLEGRSIRLKAPLDRVLDREVQ
GPVLMAALTCFEEDIGQSEYSIMVEILNENDNTPEFVESTIQPRSISELAEVNTVVFTVQ
ATDADDDTIMYSIDQTLPDAAYFRVDLPNSGEVILAKPLDYETKTQLEITISALEINTAE
KFNTSAILIVNILDREDQYPHFLPCTPISNNQSNRVCTNPIYMVNITEGEQDILLDFSPG
PINAVDGDRGLSTPLSYSILSGADSGHFVMDELTGEVRLTRGVENRLQTPTLHLQVMAYQ
RNDPRKYSVATVVVRVVAVNHFPPQFSWPEYRGFVIEGDSPASLVNTYGNTVLLIQTQDR
DFSDGINPNMHYSLRSSSNHTQFYHITQEGLLIARTNQLWPSQTHSLKVVAVDLESGEMD
TALIKVEVLFEGQTVPQGQLGDGLLPGSCAVGKAMGMVILGLTLLGCTLYALQHVLQTYR
GLKDPEDRGCIAQGKHPNVRLQCFQLVSHSSPMPVLDEVKFKKEGLSSSTSKLLGSQSIY
SPAEFNSSPLNALPIAIPSTTYIQPILPSTTPTDPSHCPASPNSSHTPATTTTPELLTTS
TQPLDNSSFNTPTLPTPTPNLMDEPLSTDRFSHTHPFPIAEEVGTPTQVEETPKDTHPPT
SPTQQQVHTPLPPPIPINSPPHATPPPTSITTPLPLSPAADPIHTPECTGDTHTPLLTPP
CPEQDSVGTPPPKPTTGQAHIPVLTMPTPEQVGPPGYPEKCKLSTHSPETASIGDDDCFL
GDEEAIRTSDDDEDEELVRLCFRVQPTFLITNYDNDITTEIPPSSGEDEGTENGEGVERA
MELMEGDKGGVERGSDYMEGKGGHLESEAESLKQGSQSSQPCNTEQEVSVGQSKER
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atggatcccagaggtgtgtgtggaggaagtcaaaagggacagtcaggccaggggttgtgg
tgtgagaggctgggactaggcccggagcatggagctgtgctaaggaaggttctagatcca
aggctaggggctgtgattaagacctggtgttggattgaggctgtaatgatgcagccacag
aggccttgtctgtccaggtggagggtcctgctctggtccacactactcctcctcagtccc
ctcagagtcacagggcatccctatacaattgtagaagatggcttgccttgggaggccggg
agtggtgaccaaactgtgagacgagaaaattggaacccttgtctggagggccaggatgtg
ttttccacggttagagagaacagcatgatgggagaacttatcattgagcttaacacagag
ctgacagccaatgatgttgtctggaacctaactggggaggatgctgattggttcttcctg
gaagggcggagcatcagactcaaggccccattggacagagttctggaccgggaggttcag
ggcccagtcctgatggcagcgttgacctgctttgaggaggacattgggcagagtgagtac
agcatcatggtggagattttgaatgagaatgataacactcctgagtttgtggagagcacc
attcagcctcgcagcatcagtgagctggctgaggtgaatacagtggtgtttacagtccag
gccacagatgcagatgatgacaccatcatgtactccatcgaccagaccttgcctgatgct
gcatacttcagagtggatctccctaacagtggagaggtgatactggccaagcctctggac
tacgagaccaaaacacaactagagattaccatatccgctttggagattaacactgcagag
aagttcaacaccagtgccatcctgatcgtgaatatcttggacagagaggaccagtaccca
catttcctgccgtgcacgcccatctccaacaaccaatcaaatcgtgtctgcaccaatccc
atctacatggttaacatcacagaaggcgaacaggacattcttctggacttctctcccggg
ccaatcaatgctgtggatggagacagaggcctcagcacacctctcagctacagcatcctg
tcaggggctgatagcgggcatttcgtgatggatgagctgacaggggaggtgcgtctgaca
agaggagtagagaacagactacagacacccacactacacctccaagtcatggcataccag
aggaatgaccctaggaagtactcagttgccacagtggtggtccgtgttgttgctgtcaac
cactttcctcctcagttcagttggcctgaataccgtggctttgtcatcgaaggcgacagc
cctgcctcactggtcaacacttacggcaacactgtgctgctgatacagacacaggacagg
gacttctctgatggcatcaatcccaatatgcactattccctgaggtcctcgtccaatcac
acacagttctaccacatcacacaggaggggcttctgattgccagaaccaatcagctatgg
ccatcacagacacacagtctgaaggtagtggctgtggatttggagtcaggtgaaatggac
acggctctcataaaggtggaggtgctgtttgaaggacaaacagtccctcagggccaattg
ggggatgggcttcttcctggtagctgtgcagtgggcaaggctatgggtatggtcatcctg
gggctgactctgttaggctgcactctgtatgcactgcagcatgtactccagacatacaga
ggactgaaggacccagaggacaggggctgtatagcccaggggaagcaccccaacgtgaga
ttacaatgcttccaactggtgagtcacagtagtcccatgccagtactggatgaggtgaaa
tttaaaaaagagggtctgagcagctccacctccaagctactgggcagtcagagcatctac
agtcctgcagaattcaactcttctccactcaatgctttacctatagctataccctcaacg
acctacatccagcctatactacccagcaccactcctacagaccccagtcattgccctgct
tcacccaactcctcccatacacctgctacaaccaccacacctgaactactcacaacatcc
actcaacccttggacaactctagctttaacacacccacactccccacacctaccccgaat
ctgatggatgaacctttatctacagacagattttcacatacacaccccttccctattgca
gaagaggtaggtacacccactcaggtagaagagactcctaaagacacccacccacctact
tcacctacccaacagcaggtacacacacctttacctcctcccattcctatcaactcaccc
ccccatgccaccccacctcctacctcaattaccacacctctccctctttcacctgctgca
gacccaatacacactccagagtgtacaggagatactcacacacctttacttactccaccc
tgtccagagcaggacagcgttgggacacccccacctaaacccactacagggcaggcacac
atacctgtactgaccatgcccaccccagagcaggtaggaccaccggggtaccctgagaag
tgcaaactctccacacacagccctgagacagcctccattggggatgatgactgcttcctg
ggggatgaggaggccatcaggaccagtgatgatgatgaggatgaagagctggtgagactc
tgttttcgagtacagcccacattcctgataacaaactatgacaatgacatcactactgag
atcccccccagcagtggagaggacgaggggactgagaatggcgaaggagtggagagagcg
atggaattgatggagggagacaagggaggggtcgagagaggcagtgattatatggaagga
aaggggggtcatttggagagcgaagcagagagcttgaaacaggggagtcaatcatctcaa
ccctgtaataccgagcaggaagtatcagtgggccaatcaaaggagagatag
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