Oncorhynchus tshawytscha (Chinook salmon): 112245488
Help
Entry
112245488 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF2-like isoform X3
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04120
Ubiquitin mediated proteolysis
otw04137
Mitophagy - animal
otw04144
Endocytosis
otw04340
Hedgehog signaling pathway
otw04350
TGF-beta signaling pathway
otw04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112245488
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
112245488
04350 TGF-beta signaling pathway
112245488
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112245488
04137 Mitophagy - animal
112245488
09144 Cellular community - eukaryotes
04520 Adherens junction
112245488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112245488
04121 Ubiquitin system [BR:
otw04121
]
112245488
03029 Mitochondrial biogenesis [BR:
otw03029
]
112245488
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
112245488
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
112245488
Autophagy
Mitophagy
Other mitophagy associated proteins
112245488
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
HECT type E3
112245488
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
112245488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Motif
Other DBs
NCBI-GeneID:
112245488
NCBI-ProteinID:
XP_024269376
LinkDB
All DBs
Position
LG02:63607617..63697078
Genome browser
AA seq
783 aa
AA seq
DB search
MSNQGVRRNGPVKLRLTVLCAKNLSKKDFFRLPDPFAKVVVDGSGQCHSTDTVRNTLDPK
WNQHYDLYIGKSDSITISVWNHKKIHKKQGAGFLGCVRLLSNAINRLKDTGYQRLDLNKL
GPNDNDTVRGQIVVSLQSRDRIGTGGPVVDCSRLFDNDLPDGWEERRTASGRIQYLNHIT
RTTQWERPTRPASEYSSPSGRPLSCVVDENTPVMTPNGAAIGVLPSSGSDPRVQERRVRS
QRHRNYMSRTHLHTPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNVNCEE
LGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLSANLHLVLNPNGPGPNGSRVAMESQ
SQNTNLSSRQSNQLKEQQPPPQVPALSPAQLPEEAECLTVPKYKRDLVQKLKILRQELSN
QQPQAGHCRIEVCREEIFEESYRQVMKMRPKDLWKRLMVKFRGEEGLDYGGVAREWLYLL
SHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFT
LPFYKQLLGKPITLDDMESVDPDLHNSLVWILDNDITGVLDHTFCVEHNAYGEIIQHELK
PNGKTVSVSEDTKKEYVRLYVNWRFLHGIEAQFLALQKGFNEVIPQHLLKSFDEKELELI
VCGLGKIDIADWKSNTRLKHCTTDSNVVKWFWKAVESYDEERRARLLQFVTGSSRVPLQG
FKALQGAAGPRLFTIHQIDANTNNLPKAHTCFNRIDVPAYEQYDKLYDKLLTAIEETCGF
AVE
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatcaaggagttaggagaaatggcccagtgaaactgcggttgacagtgctgtgt
gcgaagaacttgtcaaagaaagacttcttccggctgcctgacccctttgccaaagtggtg
gtggacggctcggggcaatgccactccacggacaccgtgaggaacacgctggacccgaag
tggaaccaacattatgacctgtacattgggaagtctgactccatcaccatcagtgtgtgg
aaccacaagaagattcacaagaagcagggggccggcttcttgggctgtgtacgccttctc
tccaacgccatcaaccgcctcaaagacaccggctatcagagactggacctgaacaagctg
ggccccaatgacaacgacacagtgagaggccagatagttgtgagtctacagtccagagac
cgtatcggcacaggaggccccgtggtggactgcagccgtctgtttgataatgatttacct
gatggctgggaggagcggagaacagcctctggtcggatccagtaccttaaccacatcaca
cgcaccactcaatgggagaggcccacccggccggcgtctgagtactccagcccctccggg
cggcccctcagctgcgtggtggatgagaacacgccggtcatgacacccaacggggcagcc
atcggtgtgctgcccagcagtggcagtgacccgcgggtccaggagagacgcgtccgttcc
cagagacacaggaactacatgagcaggacccacctccacaccccgccggacctgccagag
ggatacgagcaaagaaccacgcagcagggccaggtgtacttcctccacacccagacgggc
gtcagcacatggcacgaccctcgagtgcccagggatctgagcaacgtcaactgtgaggag
ctgggtcctctgccgccgggctgggagatccgcaacacggcaacgggacgcgtctacttt
gtggaccacaacaaccgaaccacgcagttcaccgacccgcgcctctccgccaacctccac
ctggtcctcaatccaaacggccctggtccaaacggttcccgcgtggccatggagagccag
agccagaacactaacctcagtagtcgtcagtcgaaccagttgaaggagcagcagcccccc
ccgcaggtcccggcgttgtccccggcccagctccccgaggaggccgagtgcctcaccgtg
cccaagtacaagagggacctggtccagaagctcaagatcctccggcaggagctgtccaat
cagcagccccaggcaggacactgtcgcatcgaggtctgccgtgaggagatctttgaggag
tcgtaccgccaggtgatgaagatgcgtcccaaggacctgtggaagagactgatggtcaag
ttcagaggagaggagggcctggactacggaggagtggccagggagtggctgtacctgctg
tcccatgagatgttgaacccctactacggcctgttccagtactccagagacgacatctac
accctgcagatcaacccagacagcgccgtcaacccggagcacctgtcctacttccacttt
gtgggccgtatcatgggcatggctgtgttccacggccactacatagacgggggcttcacc
ctgcccttctacaaacagctgctggggaaacccatcaccctggacgacatggagtcagtg
gatccggacctccacaacagcctggtctggatcctggacaatgacatcacgggggtgctg
gaccatacgttctgtgtggagcacaatgcctacggagagatcatccagcacgaactgaag
cccaacggcaagactgtctctgtctccgaggacaccaagaaggagtatgtcaggctgtat
gtgaactggaggttcctccacggcatcgaggctcagttcctggccctgcagaagggcttc
aacgaggtcatcccacagcacctgctcaagtcctttgacgagaaggaactagagttgata
gtgtgtggcctcgggaagatcgacatagcagactggaagagcaacacgcgcctgaagcac
tgcaccacggacagcaacgtggtcaagtggttctggaaggccgtggagtcctacgacgag
gagaggagggccagactgctgcagtttgttaccgggtcatctagagtcccactgcaggga
ttcaaggctttacaaggtgccgcggggcccaggctgttcaccatccaccagatcgatgcc
aacaccaacaatctacccaaagcccacacctgctttaaccggattgacgttcccgcctac
gagcaatatgacaagctgtacgacaagctgctgacagccatcgaggagacgtgtggcttt
gcggtggaatga
DBGET
integrated database retrieval system
