Oncorhynchus tshawytscha (Chinook salmon): 112245531
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Entry
112245531 CDS
T05605
Name
(RefSeq) nuclear pore complex protein Nup133
KO
K14300
nuclear pore complex protein Nup133
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112245531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112245531
03036 Chromosome and associated proteins [BR:
otw03036
]
112245531
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112245531
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
112245531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_C
Nucleoporin_N
CHASE3
Motif
Other DBs
NCBI-GeneID:
112245531
NCBI-ProteinID:
XP_024269416
LinkDB
All DBs
Position
LG32:complement(10762587..10768417)
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AA seq
1140 aa
AA seq
DB search
MFSPRSTPSSGRRQSLRVTGRKSLAGTPTGLLFSPRRTSLAARSTPTRVQSYSTSDALHF
DVQTFGSSLPVKVMEALTMADADDQISVKVDESGWAWMVCGERLIIWKICQTAVAKLSVC
KGLQLPTSEFAYYADLVSISSPSPLETASVQSISVMAVAPEGTARFWPSLAHEGNYTETV
VDMGENLCNFVVAVRGGSFIVSSYKGQMMRLGADPSGKLLQRALQQGQGVLSGIGRRVSS
LFGMRAPLTNNNLHSVLWVGEMGCLYTLTSCGLSKWEVDEVTEHQVLSWDSSRALTESVA
DAIWGSESNYEEIKEGVNVTYMDMQLSQDGLVVLAAAWHPSDSPCLAYFCLVTLLDNGNN
ISDELSVEVTKYNPPFQSEDALQAMRLMLPRASSPAAFLYNEELVFACSTGTGRGGLPEE
KIPFNTPGDRLRGGGCCANLPVFFSQNSGLVAVVARESASMLPETMEDSLCFSLAGAGPE
ATAMETPTRMEPVAQEDKTKLLKAAFLQFCRNDLVGAQTMTDELFPPEGDGDGEVGGELD
LVVTRINLDLVDDYPASDPRWAESVPDESAGFPLTSLIILHQLEDKMKAHGCFMDFLLQV
GLLDRLGQTAVRSSPMATRLLLCEHAEKLQAAMTLKNHHTKHGELVNRAILIALRKSNAA
VSTSLTAADVFFREVSQISSVFECLLEEEERTLKENPVDSVKWAEVVLSVNTIIKDMLQA
AGQYRDTKASLYRASESTPAEPEYIPWTASSGLGGVRTVIARQHEVILRDVYPHADSELR
NGLNEQLAALLDVLLGGYVAQLTSLRPGRPGQQDRYNTLEMEYTQRRSELLAPLLELGQY
QWVAALAEKYCDFDILVQMCEQTDNQNRLQHYMAKFADQNFADFLFRWYMEKGKRGKLLS
QPIAQHQQLASFLQSHEHLSWLHHIHVHDFSSAYKTLYGQANMETRYFVKKKTLLALSKL
TALASDMPEAVMKKHVDEMVEQERFLLHQETLPKQLLEEKQQNPDTMPLLSAHNLINLYI
CDDNRRANEYDFKKALDLLEYIDEEDAVDIEGLKCEIFCKALKKDDWLSADGNDDPLEAA
KDSIFVKILLKLIQEGVPLQTYLPDVKDLLQLDEMEALKSKPTFEFVLRANYEHYLQAQI
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtttagccctcgttctacccctagttcaggccgaaggcagtccttaagggtcaccggt
agaaagagtctcgccggtacacctacagggcttctcttttccccacgtaggacgtcgtta
gcagcgagatcaactcccacgcgtgtccagagctactcaacttcagacgcactccacttc
gatgtccagacgtttggctcttctctacctgtcaaagtcatggaggctttgacaatggct
gatgccgatgaccagatctctgtgaaggtggatgagagtggctgggcctggatggtgtgt
ggagagagactgatcatctggaagatctgccagactgctgttgcaaagttgtcagtatgt
aagggcctccagctgcccactagtgagtttgcctactatgctgatctcgtctccatatca
tctcccagccctctggagactgccagtgttcagtctatctctgtcatggcggtggctcca
gagggaacagcccggttctggcccagtttggcccacgaggggaattacactgagactgtg
gtcgacatgggcgaaaacctctgcaactttgttgtggctgttagggggggtagtttcatc
gtgtcatcctacaagggccagatgatgcgcctcggggcagacccctccgggaagctgctg
cagagggcgctacagcagggccagggggtgctttccggcatcggacgccgcgtctccagc
ctgtttggcatgcgtgccccgctcaccaacaacaatctccacagtgttctgtgggtgggc
gagatgggctgcctgtatactctgacctcctgtgggctcagtaaatgggaggtggatgag
gtcacagagcaccaggtcctcagctgggactccagccgcgctctgacggagagtgtcgcc
gacgccatctgggggtcagagagcaactatgaggaaatcaaggaaggagtgaacgttacc
tacatggacatgcaactgagccaggatggcctggtagtgttggcggcagcctggcacccc
tcagactccccctgcctggcctacttctgcctggtcaccctgctggacaacggcaacaac
atttctgatgagctctctgtggaggtcaccaagtacaacccccccttccagagtgaggat
gctctccaggccatgaggctgatgttaccacgggcctccagccctgctgccttcctgtac
aacgaggagctggtgtttgcctgctccaccggtaccggcagaggaggtctacctgaggag
aagatccccttcaacacacctggtgaccgtctgcgtggtgggggctgctgtgccaaccta
ccggtgttcttctcccagaacagtggtctggtggccgtggtggccagagagagtgcctcc
atgctgcctgagaccatggaggactccctctgcttctccctggctggggccggccctgag
gcaactgctatggagactccgactaggatggagcctgtagcgcaagaggacaaaaccaaa
ctcctaaaagcagcgtttctgcagttctgccggaatgacctggtgggggcccagaccatg
acagacgagctgttccccccggagggggacggagacggggaggtgggcggggagctggac
ctggtggtgacccggatcaacctggacctggtggatgactacccagcctcagacccccgc
tgggccgagtctgtccctgacgagagtgctggcttccccctgacctccctcatcatcctc
caccagctagaggacaagatgaaggcccacggctgcttcatggacttcctgctacaggtg
ggtctcctggaccggctgggccagaccgcggtgcgctcgtctcccatggcgacgcgcctg
ttgctgtgcgagcacgccgagaagctacaggcggccatgacactgaagaaccaccacacc
aagcatggcgagctggtcaatcgtgccatcctcattgccttgaggaagagcaacgcagcc
gtgtccaccagcctcaccgccgcagacgttttcttcagagaggtgtctcagatctcctca
gtctttgagtgtctactagaagaggaggagaggactttgaaggagaaccctgtggactct
gtgaagtgggctgaagtggtgctcagtgtcaacaccatcatcaaggacatgctgcaggct
gctggtcagtacagagacaccaaggcctcactgtacagagcctcagagagcacccctgct
gagccagaatacatcccatggaccgcctctagcggtctgggaggggttcgcaccgtcatc
gcccgccagcacgaggtgatcctgcgtgacgtgtaccctcacgccgactcggagctgcgc
aatggcctgaacgagcagctggcagcgctactggacgtgctcctgggaggctacgttgcc
cagctgacctcactgagaccgggccgcccgggccagcaggaccgctacaacaccctggag
atggagtacacgcagcgccgctctgaactgctcgcaccactgttggaactgggtcagtac
cagtgggtggcggcactggcagagaagtactgtgactttgacatcctggtccagatgtgt
gagcagactgacaaccaaaacagactgcagcactacatggccaagttcgccgaccagaac
tttgcggacttcctgttccgctggtacatggagaaggggaagaggggcaagctgctctcc
cagcccatcgcccagcaccagcagctggccagcttcctgcagtcccacgaacacctcagc
tggctgcaccacatccacgtccatgacttcagcagtgcttacaaaaccctgtatggccag
gccaacatggagacacgttactttgtgaagaagaagaccctgttggctctcagtaaactg
actgccctggcatcagacatgcctgaggctgtgatgaagaaacatgtagacgaaatggtc
gagcaggagcggttcctgctgcaccaggagactctgcccaaacagctgctggaggagaaa
caacagaaccccgacaccatgcccctgctcagcgctcacaaccttattaatctgtatatt
tgtgatgacaaccgacgagccaatgagtatgacttcaagaaggctctggatctactggag
tacatagacgaggaggacgctgtggacattgagggactcaagtgtgagatattctgcaag
gccctcaagaaagacgactggttgtctgctgatgggaacgatgaccctctggaggcagcc
aaggacagcatctttgtcaagatcctcctcaagctcatacaagaaggtgttcctctacag
acctaccttcctgacgtcaaagaccttcttcagctggacgagatggaggctttgaaatca
aagcccacttttgagtttgtactgcgggccaactatgaacattacctgcaagcacagatc
tga
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