Oncorhynchus tshawytscha (Chinook salmon): 112245911
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Entry
112245911 CDS
T05605
Name
(RefSeq) vacuolar protein sorting-associated protein 33A
KO
K20182
vacuolar protein sorting-associated protein 33A
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04140
Autophagy - animal
otw04148
Efferocytosis
otw05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112245911
04148 Efferocytosis
112245911
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112245911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112245911
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
112245911
Hops complex
112245911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec1
Takusan
Motif
Other DBs
NCBI-GeneID:
112245911
NCBI-ProteinID:
XP_024269867
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All DBs
Position
LG04:29962536..29973043
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AA seq
601 aa
AA seq
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MSAHLSYGRVNLNILREAARKELREFLDKCGGSKAIVWDEYLTGPFGLIAQYSLLKEHEV
EKMFTLKGGRLPAADVKNIIFFVRPRLELMDIIAENVISEDKMHSPRDFHILFVPRRSML
CEQRLKEQGVLGSFINIDEYILDLIPYDGDLLSMESEGAFRECYLESDQTSLYHTAKGLM
TLQALYGTIPQIFGKGECARHVANMMLRMKREFAGSQTQILPVFDSLLLLDRNVDLLTPL
ATQLTYEGLIDEVYGITNGYVKLPPEKFSAQKKQGEAGKDLPTEPKKMQLNSAEELYAEI
RDKNFNGVGAALSKKAKIISAAFEERHSAKTVGEIKQFVSQLPHMQAARSSLANHTSIAE
LIKDITTSEAFFDNLTVEQEFMTGVDTDKVNTYIEDCIAQKDPLIKILRLVCMQSVCNNG
LKQKLLDYYKREILQTYGYEHMLTLNNLEKTGLLKPQTSTRNNYPTIRKTLKLWMEDANE
QNPNDISYVYSGYAPLSIRLTQVLARPGWRSIEEVLKMLPGPHFEERQQLPAGLHKKRQQ
GENRTTLVFFLGGVTYAEIAALRFLSQMEDGGTEYIIATTKLINGTSWIKSLMDRPEAQA
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgcacttatcatatggaagagtaaatttaaacattttgagggaagcagcgcgg
aaggagctccgtgagtttttggacaaatgtggaggaagcaaggctattgtgtgggatgaa
tacctgactggaccctttggattgatagcacaatattcattgttgaaggaacatgaggtg
gagaagatgttcaccctcaaaggggggcgtctccctgctgctgacgtgaaaaatatcatc
ttctttgtccgtcccaggcttgagctgatggatattatagctgaaaatgtaatcagtgag
gataagatgcattccccacgtgatttccacattttgtttgtgccacggcggagcatgctc
tgtgagcagcggctgaaagagcagggggtcctgggctcgtttatcaacatagacgagtac
atcctagacctcatcccctatgatggagacctgctctccatggagtccgagggggcattc
agggagtgctatctggaaagtgaccagacaagtctgtaccacactgccaagggccttatg
actctccaggctctgtatgggaccatcccccagatatttgggaaaggggagtgtgcacgg
catgtagctaacatgatgcttaggatgaaaagggagtttgctggcagccagactcagatc
ctacctgtgtttgactcactgctgctgctggaccgcaatgtagacctgctcacccctttg
gccacacagctcacatacgagggcctcattgacgaagtctatggaattaccaacggttat
gtgaagttgcctcctgagaagttttctgcccaaaagaagcagggtgaggcgggtaaagac
ctgcccacggagcccaagaagatgcagctcaactcagcagaggagctgtatgctgagata
cgggacaaaaacttcaatggcgtaggggctgcactgagcaagaaggccaagatcatctcc
gctgcatttgaggagcggcacagtgccaaaacagtgggcgagataaagcagtttgtgtcc
cagctgccccacatgcaggcagcacggagctcgctggccaatcacacctccatagctgaa
ctcattaaggacatcaccacgtctgaggccttctttgataacctgacagtggagcaggag
tttatgactggagtcgatacagacaaggttaacacatacatagaggactgcatcgcccag
aaggatcccctaatcaaaatcctgcggctggtctgtatgcagtcggtctgcaacaatggc
ctcaaacagaagttgttggactactacaagagggagattctgcagacttatggatatgaa
cacatgcttaccctcaacaacctggagaagacaggtcttctgaagccccagacaagcacc
aggaataactaccccaccatcaggaagacactcaaactctggatggaggatgccaacgaa
cagaaccccaacgacatctcctatgtgtacagtggctatgctcctcttagcatccgtctg
acccaggtgttggccaggcccggctggcgcagcatcgaggaggttctgaagatgctccct
ggtccacactttgaggagagacaacagctgcctgctggtctccataagaagcgccagcag
ggggagaacaggaccacactggtgttctttctgggaggggtgacatatgcggaaatcgct
gccctgcgcttcctgtctcagatggaggatggtggcacagaatacatcattgccaccacc
aagctcatcaatggtacgagctggatcaaatccctaatggaccgtcctgaggctcaggcc
tcctga
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