Oncorhynchus tshawytscha (Chinook salmon): 112245924
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Entry
112245924 CDS
T05605
Symbol
atg4b
Name
(RefSeq) cysteine protease ATG4B isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04136
Autophagy - other
otw04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112245924 (atg4b)
04136 Autophagy - other
112245924 (atg4b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
otw01002
]
112245924 (atg4b)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112245924 (atg4b)
03029 Mitochondrial biogenesis [BR:
otw03029
]
112245924 (atg4b)
Peptidases and inhibitors [BR:
otw01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
112245924 (atg4b)
Membrane trafficking [BR:
otw04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
112245924 (atg4b)
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
112245924 (atg4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
112245924
NCBI-ProteinID:
XP_042178538
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All DBs
Position
LG05:85765897..85777280
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AA seq
400 aa
AA seq
DB search
MHFYISATLTYDTLGFGEFDDFPETSEPVWILGKEFNALTEKEDILSDVTSRLWFTYRKN
FPPIGGTGPTSDTGWGCMLRCGQMILGEALVRRHLGRDWRWVRSQTQREDYIGILNAFLD
KKDGYYSLHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDSWSRLAVHVAMDNTVVIE
EIKRLCMPWLDYGGAACVDLQGGMSERNGCLEGACALAEEETALWNPLLLLIPLRLGLSD
INEAYIETLKQCFQLPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPCEDSQV
PDDTYHCQHPPCRMHICEIDPSVAVGFFCRTEDDFDDWCLRFRKLSHTRAGLPMFELIDC
QPSHFACSVDVLNLNPDFSDSDRLERFFDSEDEEFEILSL
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgcatttttatatttcagctactctcacatacgacacacttggctttggagagtttgac
gattttccagagacctcagagccagtgtggatcttggggaaagaattcaatgcactcaca
gaaaaggaagacattctttcagatgtcacttcacgactatggttcacctacagaaaaaac
ttcccgcccattggagggacagggcctacgtccgacacaggctggggctgcatgctgcga
tgtggacagatgatcctaggcgaggccctggtccgcaggcatctaggccgagactggaga
tgggtgaggagccagactcagagagaagactacatcggtatcctcaacgccttccttgac
aagaaagacggctactattctttacatcaaatcgcccagatgggagtcggggaggggaag
tctataggccagtggtacggaccgaacacagtggcacaggtactgaagaaactagctgtg
tttgactcgtggagtcgcctggctgtacacgttgctatggacaacactgtggtgatcgaa
gagatcaagcggttgtgtatgccctggctggactatggtggagcagcgtgtgtggatctc
caggggggtatgtcagagcgtaacggctgcctggagggggcctgcgccctggctgaggag
gagacagctctctggaaccccctgctcctcctcattcctctcaggctgggcctaagcgat
atcaacgaggcctacatcgagaccctgaagcagtgcttccagctgccccagtccctgggt
gtcatcggagggaagcccaacagtgcccattacttcataggctatgttggagaagagctg
atctacctggacccccacaccacccagcctgcggtagagccctgtgaggacagccaggtc
ccagacgacacttaccactgtcagcacccgccgtgccgcatgcacatctgtgaaatagac
ccctctgtcgcagtgggtttcttctgcagaacggaggacgactttgatgactggtgtttg
cgcttccgaaagttgtcccacactagagcaggcctgcccatgtttgaactgatagactgt
caaccatctcacttcgcctgttctgtagatgtactcaacctcaaccctgatttctcagac
tctgataggttggagcggttctttgattctgaggatgaagagtttgaaattctgtccctg
tga
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