Oncorhynchus tshawytscha (Chinook salmon): 112245969
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Entry
112245969 CDS
T05605
Name
(RefSeq) ATP-binding cassette sub-family A member 2 isoform X1
KO
K05642
ATP-binding cassette, subfamily A (ABC1), member 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw02010
ABC transporters
otw04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
112245969
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
112245969
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
otw02000
]
112245969
Transporters [BR:
otw02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
112245969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
ABC2_membrane_2
Motif
Other DBs
NCBI-GeneID:
112245969
NCBI-ProteinID:
XP_042187309
LinkDB
All DBs
Position
LG12:14033605..14177511
Genome browser
AA seq
2547 aa
AA seq
DB search
MGFLHQLHLLLWKNVSLKRRGPWVLAFEIFIPLVLFFILLGLRQKKPAIPVKEVSFYSAA
PLTSAGIIPIMQSLCPDGQRDEFGFLQYKNSTVTQLLERISDVVLQNHLLTADRPGLGQE
LESLQQHLERLSTPTGRSPLDNGFNTSQGFTVASMLKNQSVFRQFLVRNLSLPNNTANLL
LSTPVNLKEVFNMIFGLYPRAGGGSSHASGGAKETAQTPAEKSLQLEEKLLGAMHRLDGG
LIHKALRDPTKAAHRQGLLKLMSQALGLAEGEAGQRYDPQGLKEMEGVLLTGAMLEMLTC
GEDGTGELSKILLVPEKQQSLLQAYRSTVCDGGEGQRTERFGEMSQELRDQIDTQSLVDK
LRLEKVNFSAPLSQSHLGALLKDLADVERLFRDVDLLSGLARLLPKGACAGGHTAPGAPA
NTTTSWARNATTWGPNTTETPGEEGGEEEGGGREKEKGKENPHSQFSAFVQLWAGLQPIL
CGNDRIIEPEALKQGNMSSLGFTSKEQRNLGLLVHLMTTNPKILYSPVGSQVDKVIQKAN
ETFAFVGNVTHYARVWLNISAQLRTYLEEGKLHHQLAWLQLLTSNLRGHPELLNGTDSDL
LRGLLDGNYTLSNTSTLLGQLDTIDNAACGWTHFMSKVSVDIFKGFPDEDSIVNYTLNQA
YHDNISVFASVIFQTNRDGSLPPHVLYKIRQNSSFTEKTNEIRRAYWRPGPNTGGKFYFL
YGFVWIQDMIERAIINTFVGHDVVEPGNYVQMFPYPCYTRDDFLFVIEHMMPLCMVISWV
YSVAMMIQHIVAEKEHRLKEVMKMMGLNNAVHWVAWFITGFVQLSISVTALTAILKYGRV
LLHSDILIIWLFLSIYAIATIMFCFLVSVIYSKAKLASACGGIIYFLSYVPYMYVAIREE
VAHDKITAFEKCIASLMSTTAFGLGSKYFALYEVSGVGIQWRTINQSPVEGDDFNLGLSM
MMLIIDASVYGVLTWYIEAVHPGMYGLPRPWYFPLQKSYWLGSGRVETWEWPWGGAARLS
VMEEDQACAMEHRRCEEMRGMEEEPSHLPLVVCIDKLTKVYKTGNKLALNKLSLNLHENQ
VVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTDMERIRQNLGMCPQHNVLFDK
LSVEEHLWFYSKLKGMAEEDIRKEMDKMIEDLELNNKRHSLVQTLSGGMKRKLSVAIAFV
GGSRAVILDEPTAGVDPYARRAIWDLILKYKQGRTILLSTHHMDEADLLGDRIAIISHGK
LKCCGSPLFLKSTYGDGYKLTLVKKQSESGDQVTQPPFFLSPCSSSSLSPSSSLSPSSLS
PCSEARVTKFIRQFVGSCLLVSDSNTELSYVLPSEAVKKGCFERLFQALEQSLDLLALTS
FGVMDTTLEEVFLKVSEEDQSLENSDADMKDSPGGSSMGKPAAAVVGLGASGPQGDGPGP
GAPAGGSSSVLRPGVELSNLVNCSRLSQSQSSLRSSSSLGSVRGDEGGLYTDFYGDYCPL
FDNGQDPDSTSLTAEADETSGPEQPVVLEDQGSFKLEGWWLKLRQFHGLIVKRFHCAKRN
TKGLFSQILLPAFFVCVAMTVALSVPSIGDLPPLVLSPSQYHNYTQPRGNFIPYANEDRP
QYSSKLSPDASPQKIANTLRLPSGVGATCVLKTPFNSTLDQLAQTLNPSANNSKTLAARY
FDSMCLDSFTQGVPLSNFVPPPPSPAPSDDPDPRFEDRLWNFTAATLTTVRETVTSPPTL
PLSIREPVRCICSMQGTGFSCPSGVGGRPPLMKVVTGDILVDITGRNVSEYLLYTSDRLR
LHRYGGLTVGNIQKSVPASFGKNNPPMVRKIAVRRSAQVLYNNKGYHSMPTYLNVLNNAI
LRANLPPGKGNPAAYGITLTNHPMNRTSARLSLDYLLQGTDVVIAIFIIVAMSFVPASFV
VFLVAEKSTKAKHLQFVSGCDPVIYWLANYVWDMLNYLVPATCCVLILFVFDLPAYTSPT
NFPAVLSLFLLYGWSITPVMYPASFWFEVPSTAYVFLIVINLFIGITATVATFLLQLFEH
DKDLKLVNSYLKSCFLIFPNYNLGHGLMEMAYNEYINEYYAKIGQFDKIKSPFEWDIVTR
GLVAMTIEGFVGFFITILCQYNFLRKPSRVPVSCQPIEDDDEDVASERRRVLRGEADNDM
LKIDNLTKVYKSRKMGRILAVDRLCLGVRPGECFGLLGVNGAGKTTTFKMLTGDESTTGG
EAFIGGSSILKELLRVQQSIGYCPQFDALFEDLTAREHLELYTRLRGIPWKDEERVVSWA
LEKLELSKYADMPAGTYSGGNKRKLSTAIALIGYPSLVFLDEPTTGMDPKARRFLWNLIL
DILKTGRSVVLTSHSMEECEALCTRLGIMVNGRFKCLGSIQHLKNRFGDGYMITVRTKTS
SSVKEVVRFFNRNFPEAVLKESHHTKVQFQLKSERISLAQVFSKMEQVVEVLGIDDYSVS
QTTLDNVFVNFAKKQSDNLEQQESSPPGGGQSPLQRLLTLLRPRLANTELDALVSEEPEE
LESDDDEGLISFEEERVQLSFNTDTLC
NT seq
7644 nt
NT seq
+upstream
nt +downstream
nt
atgggattcctccaccagctacatcttctgctgtggaagaatgtgtctttgaagagaaga
ggaccgtgggtgttggcctttgagatcttcatccccctggtccttttcttcatcctgctg
ggcctgcgccagaagaaacctgccatccctgtcaaggaagtctccttctacagtgcagca
cccctcacctcagcaggcatcatccccatcatgcagtctctgtgtcccgacggccagagg
gacgagtttggcttcctgcagtacaagaactccactgtgacccagttgttggagcggatc
agtgatgtggtgttacagaaccacctgctcacagcagacaggccaggactgggccaggag
ctggagtccctgcaacaacacctggagagactcagcacgcccacagggcgctccccgctg
gacaacggcttcaacaccagccaagggttcaccgtggccagtatgttgaagaaccagtct
gttttccgtcagtttctggtcaggaatctgtctctccccaataacacggccaaccttctg
ctctccactcctgtcaacctcaaagaggtcttcaacatgatatttggcctgtaccccaga
gctggaggggggagtagtcatgcttcaggcggggcaaaagagaccgcacaaacccctgca
gagaagagccttcaactggaagagaagcttctgggagccatgcatcgtctggacggagga
ctgatccacaaagctttacgagacccaaccaaagcagcccatcggcagggcctactcaaa
ctcatgtctcaggcattaggcctagcagaaggagaggcaggccagagatacgatccccag
ggactgaaggagatggagggtgttctcctgactggtgccatgttggaaatgcttacttgt
ggggaggatgggactggtgagctgagcaagatcctattggttcctgagaagcagcagtcc
ctgctccaggcctatcgcagcacagtgtgtgatggaggggagggacagaggactgagcgc
tttggagagatgagccaggagctgagagaccagatagacacacagagcctcgttgacaag
ctgcgtctggagaaggtcaacttctcggctcctctgtcccagtcccacctgggtgctctg
ctgaaagacctggctgacgtggagaggctcttcagggacgtagacctgctgtcaggcctg
gctcgcctgctccctaagggggcctgtgctgggggtcatacggcccctggggcccccgcc
aacaccaccacctcctgggcccgcaacgccactacctgggggcccaacaccactgagacc
cctggggaggagggaggagaggaggagggtggaggacgagagaaagagaaagggaaagag
aatcctcattcacagttttctgcttttgtacagctgtgggcagggctgcagcctattctg
tgtgggaacgataggatcattgagcctgaagctttgaagcaggggaatatgagctctctg
ggtttcaccagtaaagagcagcgcaatctgggtttactcgtgcatctgatgactacaaat
cccaagatcctctactctcccgttggctcacaggtggacaaagtcattcagaaggcaaat
gagacatttgcgtttgtggggaacgtgactcactacgccagggtgtggctcaatatctct
gcccagctcaggacctacctggaggagggaaagctgcaccaccagctggcctggctgcag
ctgttgacctctaacctgcgtggtcacccggagctgctgaacgggacggacagtgacctg
ttgcgtgggctgctggatggcaactacaccctgtccaacacctccaccctgctggggcag
ctggacaccatcgacaacgcagcctgcggctggacacacttcatgtccaaggtcagtgtg
gatatcttcaagggtttccctgatgaagacagcatcgtcaactataccctgaaccaagcc
taccacgataacatctcagtgtttgccagtgtgatattccagaccaacagagatggctcc
ctgcctcctcatgtcctctataagatcagacagaactccagcttcacagagaaaaccaac
gagatccgccgggcctactggcgcccggggcccaacacagggggaaagttctactttctc
tatggctttgtgtggatccaggatatgatagagagagccatcattaacacgtttgtgggt
catgacgtggtggagcctgggaactatgttcagatgttcccctacccctgctacaccaga
gacgacttcctgtttgtgatcgagcacatgatgcctctgtgcatggtgatctcctgggtg
tactctgtagccatgatgatccaacacattgtggctgagaaggagcaccggctcaaagag
gtgatgaagatgatgggcctgaacaatgcggtccactgggtggcctggttcatcactggc
ttcgtccagctgtccatctcagtgaccgccctgacggccatcttgaagtatggcagagtg
ctcctccacagtgacatcctcatcatctggctcttcctctccatctacgccatcgcaacg
atcatgttctgtttcctggtgtcagtgatctactccaaggccaagctggcgtctgcctgt
ggcgggataatctacttcctaagctacgtcccctacatgtacgtggccatcagggaggag
gtggcccatgacaagatcaccgcctttgaaaagtgcattgcttctctgatgtcgaccaca
gcgttcggcctgggctctaagtactttgccctgtatgaggtgtcaggagttggcatccag
tggcgcaccatcaaccagtcgcctgtagagggcgatgactttaaccttggtctgtccatg
atgatgctcatcatcgatgccagtgtgtatggagttctcacctggtacatagaagctgtg
catccagggatgtatgggctgccccggccgtggtacttccccctgcagaagtcctattgg
ctgggcagtgggcgtgtggagacgtgggagtggccttggggaggagcagccaggctgagt
gtcatggaagaggaccaggcgtgtgccatggaacaccggcgatgtgaggagatgcgtggt
atggaagaggagcccagccacctgcccctggtggtgtgtatagacaagctgaccaaggtg
tacaagacgggcaataaactggccctcaacaagctgagcctcaaccttcatgagaaccag
gtggtctccttcctgggccacaacggagctggaaagacaaccaccatgtctattctgaca
ggtctgttcccgcccacctcgggctcagccaccatctacggccatgacatccgtactgac
atggagcgtatcaggcagaacctgggtatgtgtccccagcacaacgtgctctttgacaag
ctcagtgtggaggagcacctgtggttctactccaaactcaaaggcatggccgaggaggac
atccgcaaggagatggacaagatgatcgaggatctggagctgaataataaacggcacagc
ctggtccagactctgtctggaggaatgaaacggaaactgtccgttgccatagcgtttgtg
ggcggctcccgggcagtcatcctggatgagcccacggcgggtgtcgacccttacgcacgc
agagccatctgggacctcatcctcaagtacaaacagggccgcaccatcctgctgtccacc
caccacatggatgaggctgacctgttaggagaccgcatagccatcatctcccatgggaaa
ctcaagtgctgcggctccccactctttctcaagagcacctacggagacggctacaaactc
accctggtcaagaaacagagtgagagcggcgaccaggtcacccagcctccattcttcctg
tctccctgctcctcctcctccctgtctccctcctcctccctgtccccctcctccctgtct
ccctgctcggaggcccgggtcaccaagttcatccgtcagttcgtggggtcctgtctgctg
gtgtctgactccaacactgagctgtcctatgtgctgccttcggaggctgtcaagaagggc
tgctttgagaggctctttcaggcgttagagcagagtctggacctcctggctctgaccagc
ttcggggtgatggacaccactctggaagaggtcttcctcaaggtgtcagaggaggaccag
tccctggagaacagtgatgctgacatgaaggattccccgggcggtagctcaatggggaag
cctgctgctgcggtggtgggtctgggggcctctgggccgcagggtgatggcccggggccg
ggggctcctgcaggaggcagcagcagtgtgctgagaccaggggtagagctcagtaacctg
gtaaactgctccaggctcagccagagtcagtcgtccctgcgctcatcctcctccctgggg
tccgtgcggggagacgagggggggctctacacagacttctatggagactactgccccctc
ttcgacaacggacaagaccctgactctaccagcctgacggcggaagcggatgagacctct
ggccctgagcagcctgtggtcctggaggaccagggcagcttcaagctggagggttggtgg
ctgaagctacgtcaattccatggcctcatcgtgaagaggttccactgtgccaagaggaac
accaagggtcttttctctcagatcctgctgcctgcattcttcgtctgtgtggccatgacc
gtagccctgtctgtgccttccatcggagatctgccaccattggtcttgtctccatcccag
taccacaactacacccagcctcgtggcaacttcataccctacgccaacgaagaccgccca
cagtacagcagtaaactgtccccagacgccagccctcagaagatcgccaacacgctccgt
ctgccttctggcgtgggcgccacctgcgtcctcaaaacgcccttcaacagcaccctggac
cagctggcacagacgctcaaccccagtgccaacaactccaaaaccctagctgcccgctac
tttgactccatgtgtctggattccttcacccagggagtgcccctgtccaacttcgtaccc
cctcccccctcgccagccccctcagatgaccccgaccctcgttttgaggatagactgtgg
aacttcactgctgccactcttaccactgtacgggaaacagtgacctctccccccaccttg
cctctgtctatccgggagccggttcgttgtatctgctccatgcaggggacgggcttctcc
tgccccagtggggtcggggggcggccgccccttatgaaggtggtcactggggacattctg
gtggacatcaccgggcgcaacgtgtcagagtacctcctctacacctctgacagactgcgc
ctgcacagatatggaggactcactgtaggcaacatacagaaatcagtcccagcatccttt
gggaaaaataatccgcccatggttcgcaaaatagccgtgcgcagatcagctcaggtgctg
tacaataataaagggtaccacagcatgccaacctatctcaatgtcctcaacaacgccatc
ctgcgcgccaatctgcctccaggcaagggcaaccctgctgcatacggaatcaccctgacc
aaccaccctatgaaccgtaccagtgcaaggctctctttggactacctgctccagggcact
gatgtggtgatagccatcttcatcatcgtggccatgtcctttgtaccagccagctttgtg
gtcttcctagtggcagaaaagtctaccaaggcgaagcacctgcagtttgtctctggatgt
gacccagtcatctactggctggccaactatgtatgggacatgctgaactacctggtgcca
gccacgtgctgtgtccttatcctgtttgtctttgaccttcctgcgtacacatccccaacc
aacttccccgcggtcctctctctcttcctcctctacgggtggtctataactcctgtcatg
taccctgcctccttctggttcgaggtgcccagcacggcctatgtgttcctcatagtcatc
aacctcttcataggaatcactgccactgtagccaccttcctgctgcagctctttgaacat
gacaaggatctgaaactggtgaacagctacctaaagtcctgtttccttatcttcccaaat
tacaacctgggtcacggcctgatggaaatggcctacaacgaatacatcaatgagtactat
gctaaaataggtcagtttgacaagatcaagtctccatttgagtgggatattgtgactcga
gggctggttgccatgacaatcgagggctttgtaggcttcttcataaccatcctgtgccag
tacaatttcctcaggaaaccctcgagagtaccagtcagctgccagcccatagaggatgat
gatgaggatgtggcctctgagagaaggagagtactgagaggagaagctgacaacgacatg
ctgaagattgacaacctcaccaaggtgtacaaatcgaggaagatggggcgtatcttggct
gtggaccggctatgtttgggcgtgcgtcctggggagtgtttcggcctcctgggtgtgaac
ggagcagggaagaccaccaccttcaagatgctgactggagacgagagcaccacgggagga
gaggccttcataggggggagcagtatcctgaaggagctgttgagggtgcagcagagcatt
ggctactgtcctcagtttgacgccctgtttgaagacctgacagccagagagcacctggag
ctgtacacacgcctccggggcatcccctggaaggacgaggaaagggtggtctcatgggcc
ctggagaaactggagctgtccaagtatgcagacatgcccgctggcacctacagtggggga
aacaagcgcaagctgtccactgccatcgccctcatcggatacccctctctcgtattcctg
gatgaacccactacagggatggatcctaaggcccgcagattcctctggaacctcatcctc
gacatcctcaagacgggacgctctgtggtgctgacatcacacagtatggaggagtgtgag
gctctgtgcaccagactgggcatcatggtcaacggcaggttcaaatgcctgggtagcatc
cagcacctcaagaacaggtttggtgatggttatatgatcacagtccggaccaagaccagt
tccagtgtgaaggaggtggtgagattcttcaacaggaatttccctgaggctgtactaaag
gagagccaccacactaaggtccagttccagctgaagtcagagaggatctccctggcccag
gtgttcagtaagatggagcaggtggtggaggtgctgggaatagacgactactctgtcagc
cagaccacactggacaacgtatttgtgaactttgcaaagaagcagagcgacaacctggag
cagcaggagagttcgccccctggtggaggccagtcgccactgcagcgcctgctaaccctg
ctcagacctcggctggccaacacggagctcgacgccctggtcagcgaagaaccggaggaa
ctagagagtgatgacgatgagggcctcatcagcttcgaggaggagagggtgcagctctcc
tttaacacagatacactctgttga
DBGET
integrated database retrieval system
