Oncorhynchus tshawytscha (Chinook salmon): 112246060
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Entry
112246060 CDS
T05605
Name
(RefSeq) collagen alpha-1(XXIII) chain isoform X1
KO
K24355
collagen type XXIII alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112246060
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112246060
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
112246060
NCBI-ProteinID:
XP_042165647
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Position
LG30:1436462..1583505
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AA seq
528 aa
AA seq
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MGSHAKSANKKAKESINCLKSNFSYCLVGLLIVFCIMLSVCSMAFCFLVNFKTSYLEYRV
HTLEMERMFLIHPDASAQDENGTVPGLQDIIEKIVQERLTIALPKLRTAREVIQECSCPP
GPPGKRGRLGRQGEPGSPGSPGRDGYPGPLGMDGKPGAPGPMGSQGLPGPKGDKGDQGQA
GPPGPPGPPGSPGLRGLSGNTGKDGPRGHLGEQGLPGRDGTDGLEGQMGPPGRQGEDGQH
GMLGPQGPPGLKGEPGHAGNQGRSGLDGLPGMKGEMGDTGPQGDMGLPGEKAVLESYDIG
LGHVFQGPPGPPGPPGGQGPKGESGSRGAPGADGDRGAKGERGDDGMPGVAGEKGERGLT
GLTGLVGADSKKGARGDSRFEDNLAQIISIAGPPGPPGPPGLQGFMGHHGMPGPKGEPGD
IVSGEKGDAGDRGPPGLRGIQGLPGSTGLVGLPGTIGRKGEQGLPGLDGFPGLMGEKGDR
GDRGDKGDRGMVGKKGLKGQKGEEGPPGLDQPCPVGRDGLPIPGCSHK
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgggatcccacgcaaaatcagcgaataagaaggccaaggaatctatcaactgcctcaaa
tcaaacttttcatattgtttagtcgggctgttaattgtcttttgtatcatgctgtcggtg
tgttctatggcgttttgttttttggtcaacttcaagacatcttacctggagtacagagtg
catacattggagatggagagaatgttcctgatccatcccgatgcatccgcgcaggatgag
aatggaacagtacctggtctccaggatatcattgaaaaaattgtgcaggagagactgacc
atagcactgcccaaacttcgcactgccagggaggtcattcaagagtgctcctgtcctcca
gggcctccaggaaaacggggaaggctgggaagacaaggcgaacctggatctccaggctcg
cctggacgggatggttacccgggcccacttgggatggatgggaagcctggtgctcctggt
cccatgggaagccagggactgcctgggccaaaaggagacaagggtgatcagggtcaggct
ggccctcccggccccccggggccccctggctcacctggcctcagaggactatctgggaac
acagggaaggatgggcccagaggtcaccttggggagcagggtctacctggtcgagatgga
actgatggattagagggacaaatgggtcctcctggacgacagggtgaggatggacagcat
ggcatgcttggaccacagggacctccagggctaaagggggagccggggcatgctggcaac
cagggcaggagtggccttgatggactaccagggatgaagggggagatgggagacacaggg
cctcagggggacatgggcttacccggagagaaggctgttcttgagtcttatgacatcggc
cttggccatgtctttcagggccccccagggccaccagggccaccaggaggacaagggcca
aagggagaatcaggctcacgtggtgcacctggagctgatggggataggggagccaaaggg
gagagaggtgatgacgggatgcctggagtggcaggggaaaagggagagagaggtctgacg
ggcctaactgggcttgtgggagctgacagcaaaaaaggagcgagaggagattcaaggttt
gaggacaatctggcccagatcatctctatcgcaggccctccagggccccccggacctcct
gggctccaaggattcatgggacatcatggaatgcctggccccaagggggaaccaggcgac
atagtgagcggagaaaaaggggatgcaggtgacagaggacctcctgggttaaggggtatt
cagggtcttccaggttctacaggattggttggtctccctggcaccatagggagaaaggga
gagcaaggattgccgggattggatggtttccccgggctgatgggagaaaagggggacaga
ggggaccgaggagataagggtgacagggggatggtgggaaagaagggactgaagggacag
aagggcgaggagggcccccctggactggaccagccctgtcctgtgggtcgggatggattg
cccataccagggtgttcgcataagtga
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