Oncorhynchus tshawytscha (Chinook salmon): 112246061
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Entry
112246061 CDS
T05605
Name
(RefSeq) transcription factor Sox-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112246061
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112246061
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
112246061
NCBI-ProteinID:
XP_024270123
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All DBs
Position
LG01:22806388..22808407
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AA seq
315 aa
AA seq
DB search
MYNMMETELKPTAPQTNSGVTGNSNASGNNQKNSPDRVKRPMNAFMVWSRGQRRKMAQEN
PKMHNSEISKRLGAEWKLLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKD
KYTLPGGLLAPGGNAMGAGVGVGGGLGGGVNQRMDSYAHMNGWTNGGYGMMQEQLGYGQH
PGLNAHNTAQMQQMHRYDMSALQYNSMTNSQTYMNGSPTYSMSYSQQSTPGMTLGSMGSV
VKSESSCSPPIVTSSSHSRGAPCQTGDLRDMISMYLPGAEVPEQTAQSRLHMSQHYQSAP
VPGTTINGTLPLSHM
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatgatggaaactgaactgaaaccaaccgcaccccagacaaattctggggtt
acggggaattcaaatgcatctggaaacaaccagaaaaacagtccggaccgagtcaagaga
cccatgaatgccttcatggtttggtcgaggggacaacgaagaaagatggcacaggaaaac
cccaaaatgcacaattcggaaataagcaaaagacttggggccgagtggaagcttctatcc
gagagcgaaaagcgacctttcattgacgaagcgaagcgtctccgggctctccacatgaag
gaacatccggattacaaatacagaccccggaggaaaaccaagaccctgatgaagaaggac
aagtatactctgccaggtggacttcttgcgccaggcggcaatgccatgggcgctggagtg
ggtgtagggggaggcttgggcggtggggttaatcaaaggatggacagttacgcacatatg
aacggctggaccaatggaggttatgggatgatgcaggagcagcttggctacgggcagcac
cctggtttaaacgctcacaacaccgcgcagatgcagcaaatgcaccgctatgacatgagc
gcacttcagtacaactccatgacaaactcccagacctacatgaacggatcacccacgtat
agcatgtcatactcacagcagagcactcctggaatgactctgggctccatgggttcggtg
gtcaagtcagagtccagttgcagtccccccatagtcacgtcttcgtctcactcaaggggt
gctccgtgtcagactggagacctacgggacatgatcagtatgtacttacccggtgctgag
gtgccggagcaaactgcccaaagcagactccatatgtcccaacattaccagagcgcacct
gtaccaggcacgacgattaatggcacactcccattatcacatatgtaa
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