KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112246164
Entry
112246164         CDS       T05605                                 
Name
(RefSeq) DNA repair protein XRCC1
  KO
K10803  DNA-repair protein XRCC1
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    112246164
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:otw03400]
    112246164
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     112246164
SSDB
Motif
Pfam: XRCC1_N BRCT BRCT_2 PTCB-BRCT LIG3_BRCT F5_F8_type_C SLC12
Other DBs
NCBI-GeneID: 112246164
NCBI-ProteinID: XP_024270216
LinkDB
Position
LG03:complement(22003086..22025111)
AA seq 630 aa
MPEIKLMHIVSCSTEDNTHKADNLLSSDTYRKWKAAKAGEKQTSVIIQFEKEEQVYSIDI
GNEGSAFIEVLVGHSTSVKDQDYEVLLVTSSFMSPTESRNGTNTNRVRFFGPTQLVKAQA
QEKWDRVKIVCSQPYNKSIAYGVAFVKFHSPSEKSDLPTTTPPKLTKLGQFRVKDEAPSA
CPSLQPGSLFFNRESTSKGSPALKVSPQTEKLSYAAAALQSGSGSGHSSAPPSSSSPPPQ
APVKKKFEFSKERRSALAPPPSKKPSPMGSPELGTTTPKPKVKPSTASTPSPSTDKASPA
QNTPDTKKKESLPKPEAKSRPKPSKAQSSSSEAPVPVNKIMEGVVFVLSGFQNPFRGDLR
DKALAMGAKYHSDWTPDATHLICAFSNTPKYSQVKSAGGVIVRKEWVLDCHKRKQKISFK
QYLMGGAESSSEGSDDEESEEEKERRTPQKRREEERQPTPRKTPIKKEEEDLYGGSTDAD
EPGDESGMDTEDELKRVESESRQKKEERKGVEEEDPFGGSTDENTDAEAEEDEPIPELPD
FLTGKRFFLYGKFPNNDRRLLLRYIIAFNGAVEDYMSEKVQFVVTSEGWHDSFEDALMEN
GNLSFVKPTWIFAINDRQKTLPYQPYTVVP
NT seq 1893 nt   +upstreamnt  +downstreamnt
atgccggagataaaactcatgcacatcgtgtcttgcagcactgaagacaatactcacaag
gctgacaacctgctgagctcggacacatatagaaaatggaaagcagcaaaggcaggggag
aaacaaacctcagtcattatacagtttgagaaagaagagcaggtgtacagcatagacata
ggaaatgaagggtctgcttttatagaggtgctggtgggacactcaacctctgtcaaagac
caggactatgaggttctgctggtcacgtcgtccttcatgtcccccacggagagccgtaac
ggcaccaacaccaaccgtgtgcgcttctttggccctacccagctggtgaaggctcaggcc
caggagaagtgggaccgcgtgaagattgtgtgtagccagccgtacaacaagagcatagca
tacggtgtggccttcgtgaagttccattcaccatcagaaaaaagtgatctaccaaccact
acaccaccgaagttgaccaagcttggccaatttcgggtgaaggatgaggccccctcggct
tgccctagtcttcagccaggcagcctcttcttcaacagagagagcacctccaaaggcagc
ccagcgctcaaggtttcgccacagactgagaagctcagctatgcagctgccgccctgcag
tctgggtctgggtctggccactcctcagccccaccgtcctccagctctcccccaccacag
gcaccagtgaagaagaagtttgagttcagtaaagagcgccggtctgccctcgctccgccc
ccctcaaagaaacccagccctatgggctcccctgaactgggcactaccaccccgaaaccc
aaggtgaaacccagcacagccagtactcccagccccagcactgacaaagcgtcccctgcc
cagaataccccagacaccaagaagaaggagagcctgcccaaaccagaagccaagtccaga
cccaaaccctccaaagcccagtccagctcctctgaggcccctgttcccgtcaacaagatc
atggagggggtggtgtttgtgctgagcggcttccagaaccccttccggggggacctgagg
gacaaggccctggccatgggggccaagtaccactctgactggacccctgacgccacacac
ctcatctgtgccttctccaacacccccaagtacagccaggtgaagtcagcagggggcgtc
atcgtccggaaggagtgggtgctggactgtcacaagaggaagcagaagatctccttcaaa
cagtacctgatgggcggagcggagtccagctcggaggggagcgacgatgaggagagtgag
gaggaaaaagagaggaggactccacaaaagaggagagaagaagaacggcaacccactccc
agaaagacccccatcaagaaagaggaggaggatttgtatggtggttccacagacgcagat
gaaccaggagatgagtctggcatggacacggaggatgagctgaagagggtggagagcgag
agtcggcagaagaaagaggagagaaaaggagtggaggaggaggacccttttggagggtcg
actgacgagaacactgacgctgaggccgaggaggacgagcccatccctgagctaccagat
ttcctaactggaaagcgatttttcctttacggcaagttccccaacaatgacagacgccta
ctcctgcgttacatcatcgccttcaacggggcggtggaggactacatgagtgagaaggtc
cagtttgttgtcaccagtgagggatggcacgactcctttgaagacgcactgatggagaat
ggtaatttaagctttgtcaaacccacatggatttttgccatcaacgatcgacagaagacg
ctgccatatcagccctacactgttgtcccttga

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