Oncorhynchus tshawytscha (Chinook salmon): 112246248
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Entry
112246248 CDS
T05605
Name
(RefSeq) thrombospondin-4-B-like
KO
K04659
thrombospondin 2/3/4/5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04145
Phagosome
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112246248
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112246248
09144 Cellular community - eukaryotes
04510 Focal adhesion
112246248
09142 Cell motility
04820 Cytoskeleton in muscle cells
112246248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112246248
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112246248
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112246248
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Opsonins
112246248
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112246248
Exosomal proteins of colorectal cancer cells
112246248
Exosomal proteins of bladder cancer cells
112246248
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112246248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
cEGF
EGF
EGF_MSP1_1
Prominin
Motif
Other DBs
NCBI-GeneID:
112246248
NCBI-ProteinID:
XP_024270317
LinkDB
All DBs
Position
LG20:complement(7217436..7239322)
Genome browser
AA seq
937 aa
AA seq
DB search
MGLWTMLIVASQLILNLCSDGAQGSVYDLLNSPDCLPDLLQGGLVEQGVNEAFILTTFKL
QPKTGTTVFGLYNPRDNSKYFEFTVLGKLNRAVLRYLRSDRRMSSVTFNNIQLADGQRHR
LLFHLKGMQQGPGAVELHLDCRLVETVRDLPSVFQGLPAGYGVVELKSMQGKAEDELEEL
KLVVGDTFENVASLQNCHQQGDSVQTLGVNTKQLSNQMLELTQVINELKDVLIQQVKETS
FLRNTISECQACGLGGSEVIEPKCAPGVCFRDDMCIETEEGVECGPCPDGYTGDGFSCDD
VNECQFNPCFAGVKCVNTAPGFRCDACPLGYTGLAVEGVGVVYAQTNKQVCDDIDECKGP
NNGGCTADSLCHNSAGSYVCGGCKTGYIGGQVKGCKPERSCGNSRTNPCDVNAQCIQERD
GSITCQCGIGWAGNGYLCGKDTDIDGYPDEKLKCKDMVCKKDNCMRVPNSGQEDADEDGQ
GDACDDDADGDGILNEQDNCRLKPNVDQRNSDKDNHGDACDNCRTVENPDQRDTDGDRKG
DACDDDMDGDGLKNFLDNCQMVVNRDQLDRDGDGVGDACDSCPDIPNPNQSDIDDDLVGD
SCDTNQDSDGDGHQDTKDNCPNVINSSQLDTDKDGLGDECDDDDDNDSIPDFLPPGPDNC
RLVPNPDQLDENNDGVGDVCESDFDQDKVIDRIDNCPENAEVTLTDFRAYQTVVLDPEGD
AQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFHVNTVTDDDYAGFIFGYQ
DSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSKSGPGEHLRNSLWHTGDTNDQV
RLLWKDPRNVGWKDKVSYRWYLQHRPQVGYIRARFYEGTELVADSGVTIDTTMRGGRLGV
FCFSQENIIWSNLKYRCNDTIPEDFQFSTQHGVNDSL
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggggctgtggacgatgctgatcgtggcttcgcagctgatcttaaacctgtgctcagac
ggagcccagggatcagtctatgatctcctaaactccccggactgtctgccagacctgctg
cagggcggcctggtagagcagggggtgaatgaggcgttcatcctcaccacctttaaactg
cagcccaagactggcaccacagtgtttggtctgtacaacccccgggacaacagcaagtac
tttgagttcaccgtgctggggaaactcaacagagctgtgctgcgttacctgaggagtgat
cggaggatgagctctgtgaccttcaacaacatccaactggcggacggtcagcgccaccgc
ctcctcttccacctgaaggggatgcagcagggcccaggggcggtggagctgcacctggac
tgcagactggtggagacggtcagggatctcccctccgtgtttcagggcctgcctgcaggc
tacggcgtggtggagctgaagagtatgcagggcaaagcagaggatgagctggaggaattg
aaactggtggtgggagacacgtttgagaacgtagcctctctacaaaactgccaccaacaa
ggagactcggtgcagactctgggggtcaacacaaagcaactctccaatcaaatgcttgag
ctcacccaggtgataaatgagctgaaagatgtccttattcagcaggtcaaagagacatct
tttctcagaaacaccatctctgagtgccaggcttgtggactgggtggaagcgaggtcatt
gagccaaagtgtgcccctggtgtttgtttccgtgacgacatgtgtattgagacagaggag
ggtgttgagtgtggaccctgtcctgatggatacacaggggatggcttcagctgtgatgat
gtgaatgagtgtcagtttaacccttgcttcgccggggtaaagtgtgtgaacacagctcca
gggtttcgctgtgacgcatgtcctctgggctacactggtctggctgtggagggggtggga
gtggtctacgcacagacaaacaaacaggtctgtgacgacattgatgagtgcaaaggaccc
aacaatggagggtgcactgctgactctctctgtcacaactctgcgggttcatatgtctgt
gggggctgtaaaacaggctacatagggggccaggtgaagggctgtaagccagagaggagc
tgtggtaacagtcggaccaacccctgtgatgtcaacgcccagtgtatccaagaaagagac
ggctccatcacctgtcagtgtgggattggctgggctggtaatggctacctatgtgggaag
gacacagacattgatggataccctgatgagaaactcaagtgcaaggatatggtctgtaaa
aaggataactgcatgcgtgttcccaactctggccaagaagatgctgacgaggacggacaa
ggggacgcttgtgacgatgacgctgatggagacggtattctgaatgaacaggataactgc
aggttgaagcctaacgtggaccagaggaatagtgacaaggacaaccacggtgatgcctgt
gacaactgtcgtacggtggagaaccccgatcagagggacactgacggtgacaggaaagga
gacgcctgtgatgatgacatggatggagacggcttgaagaacttcctggataactgccag
atggtggtgaaccgggaccagttggaccgggatggagacggagtgggagacgcctgtgac
agctgccccgatattcctaatcctaaccagtccgacatcgatgatgacctggttggggat
tcttgtgacacaaaccaagacagtgatggtgacggtcaccaggacaccaaggacaactgt
cccaacgtgatcaacagctcccagctggacacagacaaagacggcctgggggatgagtgt
gacgatgacgatgacaacgacagcatccctgacttcctgccaccaggacccgacaactgt
agactggtgcccaaccccgaccagctggatgagaacaatgacggtgttggggatgtgtgt
gagtcagactttgaccaggacaaggtgattgacagaatagacaactgtccagagaacgct
gaggtcactctgacagacttcagagcctatcagacggtggtgctggaccccgagggtgac
gcccagattgaccccaactgggttgtcctcaatcagggaatggagattgtgcagaccatg
aacagtgaccctggactggctgtgggttacactgcgttcagtggggtggactttgagggg
acgttccatgtaaacacagttacggacgatgactacgcaggcttcatctttggttaccag
gactcctcctccttctacgtggtcatgtggaaacagactgagcagacctactggcaggcc
acacctttcagagcagtggccgagcctggcatccagctcaaggctgtgaagtctaagtcg
ggtccaggtgaacacctgaggaactccctttggcacacaggggacaccaacgaccaggtg
cgtctgttgtggaaggaccccaggaatgtgggctggaaggacaaggtttcctaccgctgg
tacctgcagcaccggccccaggttggatacatcagggcccgtttctatgaaggtacagaa
ctggtggctgactctggtgtgaccattgacaccaccatgagaggagggcgactgggcgtt
ttctgtttctctcaggaaaacataatctggtccaacctaaagtatcgctgcaatgacacc
atccctgaggacttccagttcagcacgcagcacggcgtcaacgacagtctctaa
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integrated database retrieval system
