Oncorhynchus tshawytscha (Chinook salmon): 112246440
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Entry
112246440 CDS
T05605
Name
(RefSeq) rho GTPase-activating protein SYDE2 isoform X1
KO
K20655
Rho GTPase-activating protein SYDE
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112246440
Membrane trafficking [BR:
otw04131
]
Others
Rho GTPase associated proteins
Rho GTPase-activating proteins
112246440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGAP
C2
Motif
Other DBs
NCBI-GeneID:
112246440
NCBI-ProteinID:
XP_024270522
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All DBs
Position
LG05:complement(74351295..74427869)
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AA seq
1814 aa
AA seq
DB search
MADPLRRNLLAKLRGKKSKKGTPAGGYGAATNGGRAGKGKVTQNPDGQTRPVVMFAELHC
LTDNIMRGNDSYVNEIVVNKVGLDQEQSTVGVVETSEFPQQYEASANMHINTSRGPGDNQ
GSGCSGIRGRVNEELLGVSLQRATQYEGNDRDEMIRIHEQGPGYFSGQLQQGHIGRAHEQ
RKHFVPIPRQYSAGDSIGFGSNSPNNHIIYHRRPDGVVKMTNGHYPASKSNGTNVCFDKD
LKTRVSHGQTDDFCHQTVYNYKADNGQRSMNDFKVTANVHPGHNQILKTNVTNNGTQMCP
PGIPCAHHPDSNYTEENIVIRNIESYGSSPEFTGDNIRVTHLQSPTFFPTELEICDVNVA
SHFICAREGALRHYSLDSEDDDYYDNVILPFYVSESLGPNDRKSSDKIEAIESGKDVPKG
QVISDSVQETDRLRSQLKEAYYLLINTMHDISFDGQVSVNGFIDQASSSSHSRDSMCSRL
SIKHVDSDAWSSGEHSVQQVSDTDSILLCLLSENRGDPSLKKNVISKSLMNLSASRIGPP
LLRSTSDRAIKYRSGAHNAPCIQALGSQSPACENGDGASRPQAVGASDPFEKQARYNGDT
SSDDLLQDTGEDFKLNESSGSVNSLTGSSDNADTHQGGNSKHDGEMSAWDRGGSAKPHGV
TVNKMQEWMHKGRLLSSEMKQRIAGSTPQPHGTHGGLDSAPRPSQGQASSVPGGSKPAAL
MTRVHGAIPATVVPCQSQALHQSALIENVHSSSDRHEVGEGKASELSLWRPPLNTITVSK
KRNWLQQSSGRPHHTTQDDSQCILGAEEDNGHGHTPRPPPSPSPEYLKPPGPPPSRPLRL
HLPQVSMCHARVGPQPRCVDPAEENDADDEGEIWYNPIPEDEEPELPHIYRPTAIPQVRL
MVPTRPQEPQAPQIQRRPSREGVAGRTLEGCSPDLEGVGESLGGGGGGGEGSQQGNAVHS
MEPSVQLHRQMLHTCKPQEEGPASSSRATAAAEGPDLATPGFSPPSSPNPAKKGSSLNWS
FPDKIKSPRTVRKLSMKMKKLPELSRKLSVKGIPSNNNNTSGNGASASSQSETRTQCPKT
NSGSEPGSAPPRLSPGGGQGAAASRNVISRYHLDSSVSTQQSYSKKKSSGTSMSASKGGY
LSDGDSPELVAKSGKHRSSEGKGGKGKEKEKDPATGGGERTGAGGVTGGGGSSKLHGTEL
DIDAFRHYSFTEQPKCTQYISGLMSLHFYGAEDLKPPRVDSRDVYCAIQVDSVNKARTAL
LTCRTTFLDMDHTFNIELENAQHLKLVVFSWDPTPKKNRVCCHGTVVLPALFRVTRSHQL
AVKLEPRGLIYVKLNLMEQWQNSLDGGYDGDRERQMFGVEAWRVVERENSGLMVPLLIEK
CITEIEKRGCQVVGLYRLCGSAAVKKELREAFERDSLGVELCENTYPDINVITGVLKDYL
RELPYPLITKHLYEAVLDSMAKRPLRIGAGGCENDQADTEQTVSLLENLPEVERLTLRRL
LDHLKLVASHHDVNKMTCQNLAVCFGPVLLSQRQEASCHSNRVFIDSEELASALHFKKHI
EVLHYLLQLWPVVDPHGKTSSPILEHPGPADQPAAPPLRRRKERPQVLNLSDAEMAGVLR
PRPGRLDSPSNRYAGDWSRCGERYLPPPLAQEENDYDDVPSEDMEVTEEGQEGEDRGKEG
GEELRQEGLLHSGQEEGQAEPPTAKQEPPLLQEVLEGPVEKEEEEREAEEERVEESDVSS
DGQPSDDRVCDDEDERILPLHNPKEHTYQAYMKIQDISPVLSNRVNLRDLQESIDTLIGN
LERELNKNNLKVSY
NT seq
5445 nt
NT seq
+upstream
nt +downstream
nt
atggctgatcctctgaggaggaatttattagcaaaacttcgggggaagaaatctaagaaa
gggacgccggctggtggatacggcgctgcgactaatgggggcagagcaggtaaaggaaaa
gttactcaaaacccagacggccaaactcgtccagtagtaatgttcgcagagttgcattgt
ctgacagacaacatcatgagaggtaacgatagttacgttaacgaaattgtagtaaacaag
gttggattagatcaagagcagagcacggtaggagttgttgagacgagtgagtttccccag
cagtacgaggcttcagctaacatgcacataaacactagccgggggccgggggacaatcag
ggtagcgggtgctccgggattaggggtcgagtaaatgaggaactcttgggggtctcactt
caaagagcaactcagtacgaggggaacgatagagacgagatgatcagaatccatgaacaa
gggcccggttacttctctggacaattacaacaaggacacataggtagagcgcacgaacag
agaaaacactttgtccccattccgcgacagtatagcgcaggggattcaatagggtttggg
agcaatagtcctaataatcacattatataccacagaaggcctgatggggtagttaaaatg
acaaatggccactatcctgcttcaaagagtaatggaacaaatgtctgctttgacaaagat
ctaaagactcgagtaagccacgggcagacagacgacttctgccatcaaactgtgtacaac
tacaaggcagacaacgggcagaggtctatgaatgatttcaaagttacggcaaacgtgcat
cctggccacaaccaaatattgaaaacaaatgttacaaataacgggacgcaaatgtgtccg
ccgggtatcccgtgtgcgcatcatccggacagtaattacaccgaggaaaacattgtgatt
agaaacatagagagttacgggagctcgcctgaatttacaggggacaacattagggtgacc
catttgcagagcccgacatttttccccactgaattggagatatgcgacgttaacgtggcc
tcccacttcatatgcgccagagaaggagcactccgacactactctctagatagcgaggat
gatgattattatgataatgtaattcttcccttttatgtatctgagtcattaggtccaaat
gatagaaaaagctcagataaaatagaagccatagagtcgggaaaagatgttcctaaagga
caagtcattagcgacagtgtgcaggagacagacagactgcggagccagttgaaagaggcc
tattaccttcttataaacaccatgcatgatattagttttgatggtcaggtcagtgtcaac
ggttttatagatcaggcaagttcctccagtcactctcgggacagcatgtgctcacggttg
tccatcaagcacgtggacagtgatgcttggtcgtctggagagcacagtgtccaacaggtg
tctgacacagactccatcctgttgtgcctgctgagtgaaaaccgaggggatccaagtctc
aaaaaaaatgtcattagcaagagtctcatgaatctatctgctagcaggattgggcctccc
ttactgcgttccactagtgacagagctatcaaataccgcagtggtgcgcacaatgcgccc
tgcatccaggccctcggttcccaaagccctgcctgtgagaatggggatggagcaagtagg
ccacaggctgttggagcctctgacccgtttgagaaacaggccaggtacaatggtgacacg
agcagcgacgacctgcttcaagacacaggtgaagacttcaagttgaacgagagtagtggc
tcggtcaacagcctcactggatcgtccgacaacgcagacacccatcagggtggtaacagc
aagcacgatggagagatgagcgcatgggaccggggaggctctgccaagccccatggagtc
accgtcaacaagatgcaggagtggatgcacaaaggccgtctgttgtcttcggagatgaag
cagcgcatcgcggggtccacgccccaaccccatggcacccacggtggcctggatagtgca
ccacggcccagccagggccaggccagctcagttccaggtggatctaaaccagcagccctg
atgaccagagttcacggggccatacccgccactgtggtcccatgccagagccaggctttg
catcagtcagctctgatagagaatgtccactcctcctccgacaggcacgaggttggcgag
ggcaaggccagcgagctgtcattatggagacccccactcaacaccatcaccgtttccaag
aaacgcaactggctccagcagagctctgggaggccgcatcacaccacccaggatgactcc
cagtgcattctgggagcagaggaggacaatggacatggacatacaccccgaccccctcct
agcccctccccggagtacctaaaaccccccggaccgccgccctcccggcccctccgcctg
cacctaccccaggtgagcatgtgccacgcccgcgttggaccccagcccaggtgtgtggac
ccggccgaggagaatgatgcggatgacgagggggagatctggtacaaccccatccctgag
gatgaagaaccagagctacctcacatttacagacccaccgccatcccccaggtcagactg
atggtccctacacggccccaggagccccaagccccccaaatccagaggaggcccagccgg
gaaggggtggccgggcggaccctggaaggctgcagccctgacctggagggtgtgggggag
agcctgggtggcggaggtggaggtggagaggggagtcagcaggggaatgctgtacattcc
atggagccgtcggtacagctgcacagacagatgctgcacacatgcaaacctcaggaggag
gggccagccagttccagcagagccacagctgcagcagaaggccctgacctggccaccccc
ggcttctcgcctccctccagccccaaccctgctaagaagggaagctccctcaactggtca
ttcccggacaagatcaagtccccgcgcaccgtcaggaaactctccatgaagatgaagaag
cttccggaactcagccgcaagctcagcgtcaaagggatccctagcaacaacaacaacacc
agtggtaacggagccagcgcgagcagccaatcagagacaaggacccagtgtcccaaaacc
aatagtgggtcagaaccaggctccgctcctcccaggttgtccccagggggcgggcagggg
gcggccgccagccgtaatgtgatctcgagatatcacttggacagcagtgtgtcgacacag
caaagttacagcaagaagaagagcagcgggacctccatgtcggctagcaaggggggctac
ctcagtgacggggactccccagaactggtggccaagtctgggaagcacaggtcctcagag
ggcaagggaggcaaggggaaggagaaagagaaagacccagccactggaggaggagagaga
acaggagcaggaggagtaacaggaggaggtggcagctccaagctgcacggcacagaacta
gacattgacgcgttccgccactactccttcacagaacagcccaagtgcacccagtacatc
tcaggcctgatgagcctgcacttctacggcgctgaggacctcaagccgccacgtgtcgac
tcccgggacgtttactgcgccatccaggtggactcggtcaacaaggcacgcactgccctg
ctcacctgccggaccaccttcctagacatggaccacaccttcaacatcgagctggagaac
gcccagcacctgaagctagttgtgttcagctgggaccccacacccaagaagaaccgggtg
tgctgtcatggcactgtggtgctaccggctctcttcagggtgaccaggagtcatcagctg
gccgtgaagctggagccacgaggcctgatctacgtgaagctgaacctgatggagcagtgg
cagaactccctggatggaggctacgatggggaccgggagcgacagatgtttggggtggag
gcctggagggttgtggagagagagaactcaggactcatggtgcccctgctcatcgaaaag
tgcatcacagaaattgagaagagaggctgccaggttgtgggcctctaccgtctgtgtggt
tcagcggcagtaaagaaggagcttcgggaggcctttgaaagggacagcctgggtgtggag
ctctgtgaaaacacctaccctgacatcaacgtcatcacaggtgtgctgaaggactacctg
cgtgagttgccgtaccccctcatcactaagcacctgtatgaggctgtgttagactccatg
gctaagaggcctctgcgtattggagcaggaggatgtgagaacgaccaggcggacacagag
cagactgtcagcctgctggagaacctgccagaggtggagaggttgaccctgcggaggctg
ctggaccacctgaagctggtggcgtcgcaccacgacgtcaacaagatgacgtgtcagaac
ctggcagtgtgcttcggtcccgtgctgctcagccaacgccaggaggccagctgccatagc
aaccgcgtcttcatcgactcagaagagctggccagtgctctgcactttaagaagcacatc
gaggtgctgcactaccttctgcagctatggccagtggtggacccacatggaaagacctca
tcccccatcctggagcaccccggcccagccgaccagcctgccgctccacccctgcgtcgg
aggaaggagcgtccccaggtgctgaacttgagtgatgcagagatggccggggtgctgcga
cctaggccgggccgactggacagccctagcaaccgttacgccggtgactggagtcgctgt
ggagagcgctacctcccccctcctctggcccaggaggaaaatgactatgatgatgttcct
tctgaggatatggaggtcactgaggagggacaggaaggagaggacagggggaaggaaggg
ggagaggagctgagacaggaaggattactgcacagtggacaggaggaaggacaggcagag
ccacctacagcaaaacaggaacccccactactccaggaggtgctggagggacctgtagag
aaggaggaagaggagagagaagcagaagaggagagagtggaggagagcgatgtctccagt
gacggtcagccatcagacgatagggtgtgtgatgatgaggatgagcgcatcctgcccctc
cacaaccccaaagagcacacataccaggcttacatgaagatccaggacatcagccccgtt
ctcagcaacagggtcaacctgcgagacctgcaggagagcatcgacacgctcataggcaac
ctggagagagagctcaacaagaacaatctcaaagttagctactaa
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integrated database retrieval system
