Oncorhynchus tshawytscha (Chinook salmon): 112246563
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Entry
112246563 CDS
T05605
Name
(RefSeq) protein transport protein Sec24A-like isoform X1
KO
K14007
protein transport protein SEC24
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112246563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112246563
Membrane trafficking [BR:
otw04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
112246563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_BS
Sec23_helical
zf-Sec23_Sec24
Gelsolin
Sen15
Motif
Other DBs
NCBI-GeneID:
112246563
NCBI-ProteinID:
XP_024270724
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All DBs
Position
LG30:complement(37144537..37176534)
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AA seq
1134 aa
AA seq
DB search
MSSTGFNFQNGPGGQPYANGPLQNQVVLQPPGPGYNMAHQPPYNPMQAKGPMPPGPGLYN
SGPYQPSSPVSSYQASPGQPRLNRPPMGPPHPMTPPQSTSPCPGLRMPPAQATPALPVSA
NSYYQHPPAWQYGALPLMGAPPPMGAPPPMATPPLAFVDNHVTSSPNLAPLQAPSAGYSA
APSPVYHNAMQPSGPPLPPTSLHRSTQPGSAPPMNPVAAPHTYQPGMTAPYGHPPTGPTP
SMRPTPPPMGNATPPLPFGPKTDAQCGSDASDDAAHTEYDNQENDIECPGHIPTPANGAQ
VRNSFDHLETSPKMDGPHQQPAPPVRHMGLSYPSLPPGYQNTSASPMQAQTQPYSHAPQS
YQQLSAGPAQLSPSLAGLSLQSQTPETLRVVNLLQERNLLPPGPITPPTPCLPQDLQKIN
CHPEVFRSTLTNIPQTQSLLNKAKLPLGLLLHPFKDLSQLPVVTSSTIVRCRSCRTYINP
FVTFLDQRRWKCNLCYRVNDVPEEFMYNPVTRSYGEPHKRPEVQNATIEFIAPSEYMLRP
PQPAVYLFVLDVSHNAVETGYLDVVCQSLLENINALPGDSRTKIGFISFDSTIHFYNLQE
GLAQPQMLIVSDIEDIFLPTPDSLLVNLNECKELVQDLLKSLPQMFGKTMETQSALGPAL
QAAFKLLSPTGGRMSVFQTQLPKLGVGALKSREDPNQRASAKEIPNLSPATDFYKKLALD
CSGQQVAVDLFLLSSQYCDLASLACISRYSAGSVYYYPSYQQQHNPAGVECFQKDLKRYL
TRKIGLEAVMRIRCTKGLSIHTFHGNFFVRSTDLLSLPNVNPDAGFAVQMSIEENLVDMQ
SVSFQAALLYTSSKGERRIRVHTMCLPVVNSLSDIFAGADVQAITGLLASMAVDRSVTSS
LSDARDAMTNASIDSLTSYRTSVLTIQQPGLLAPACLRLFPLYILALLKQKAFRTGTSTR
LDDRVFAMCQLKYQPLAYVMLMIHPALYRVDDLTDEGALNISERAIPQPRVQQLSVEKLS
REGAFLMDAGSVIYLWIGRNCNPDFLTQVLGVPDYAAVPQNMNLLPELDTAESQRTRAFV
GWLREQRPFFPILHVIRDESPLKASFMQNMIEDRTESALSYYEFLLHVQQQVSK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtacggggttcaactttcagaatggaccaggaggacagccatacgcaaatggt
cccttacagaatcaagtagtgctgcagccaccaggaccgggttacaacatggcccaccag
cctccatacaacccaatgcaagccaagggccccatgccgcctggccctggactctataac
tctgggccctaccagcccagctcaccagtcagctcttaccaggcctccccaggtcagccc
aggttaaacaggcctcctatgggacctccccaccccatgacgccccctcagtccaccagc
ccttgcccaggcctcaggatgcccccagcgcaggccacccctgctctacctgtgtctgct
aacagctactaccagcaccccccagcctggcagtatggggcccttccactgatgggagct
cctccaccaatgggggcgccgcctcctatggccactcctcccctcgcgtttgtggataat
cacgtgacctcctcgcctaacttggcaccactccaggccccctcggcggggtacagcgct
gctccttctcctgtctaccacaacgccatgcaaccctcgggtcctcccttgcctcctacc
tccctccacagatccacccagccaggctctgcccctccaatgaaccctgtggctgctcct
cacacataccagccaggtatgacagcaccttacggccacccacctacaggacccacaccc
tcgatgagacccactccaccccccatgggcaatgctacccctccccttccctttggcccc
aagactgatgctcagtgtgggagtgatgctagtgatgatgctgcccacactgagtacgac
aaccaggagaatgatattgagtgtccaggacacatacccacacctgctaatggcgctcaa
gttcgcaacagctttgatcacttggagacaagccctaaaatggatggcccacaccagcag
ccagccccccctgttcgacacatgggtctgtcctacccttctttacccccagggtaccag
aacacctccgcctcccccatgcaggcccagacgcagccttacagccatgcacctcagtca
taccagcagctgtctgcaggtccagcccagctgagcccctccctggctggtttgagtctg
cagtcccagacccctgagaccctgagggtggttaacctgctgcaggagaggaacctgctc
cccccgggccccatcacccctcctacaccctgcctgccccaggacctgcagaaaatcaac
tgtcacccagaggtcttccgcagtaccttgaccaacatcccccagacccagtctctgtta
aacaaagccaagcttccactcggcttgctgctccaccccttcaaagatctctcgcaactg
cctgtggttacctccagcaccatagtgcggtgtcgctcctgcaggacgtatatcaacccc
ttcgtgaccttcctggaccagaggagatggaagtgtaacctgtgctaccgggtcaacgac
gttccagaggaattcatgtacaacccagtcaccagatcgtacggagagccacacaaaaga
cccgaggtccagaacgccaccatcgagttcatcgcaccttcagaatacatgctgagaccc
ccccagcctgccgtttatctcttcgtgctggatgtatcccacaatgccgtggaaacggga
tacctagatgtcgtctgtcagtcactgctggagaacatcaacgcgctccctggagactcc
aggacaaagattggcttcatctcctttgacagcaccatccacttctacaacctccaggaa
ggcctggcccaaccacagatgctcatcgtctcggacattgaagatatatttttaccaaca
ccagacagccttttagtgaacctcaatgaatgcaaggagctggtgcaggatctgctgaag
agcttgccccagatgtttggcaagaccatggagacccagtctgctctgggcccggccctg
caggcagccttcaagctgctgtcgcccaccggggggcgcatgtctgtcttccagacccag
ctgcccaaactgggtgtcggggccctcaagtccagagaggaccccaaccagagagcttca
gccaaggaaatcccgaacctgtctcctgccacagacttctataagaagctggccctggac
tgttcaggacagcaggtggctgtggacctattcctactgagctcccagtactgtgatctg
gcatctttagcttgcatatccaggtactcagcaggaagtgtgtactactacccctcatac
cagcagcagcacaacccagccggggttgagtgcttccagaaggatctcaagaggtacctc
accaggaagattggcttggaggctgtaatgaggatccgctgcactaaaggtttgtccatc
cacacgttccatgggaacttctttgtgcgctccacggatctgctgtccctgcccaatgtg
aacccagacgcgggctttgctgtgcagatgtccattgaggagaacctggtggacatgcag
tccgtctccttccaggctgcgctgctctacacatccagcaaaggagagagaagaattcga
gtccacaccatgtgtttgcctgttgtcaactccctgtcggacatctttgctggggctgat
gtccaggccatcactggtctgctggctagcatggctgtggatcgctcggtgacgtccagt
ttgagtgacgcccgggacgcaatgaccaacgcttccattgactctctgacatcctaccgc
acctctgtgctcactatccagcagcctggcctcctggcccccgcctgcctcaggctgttc
cccctctacatcctggccctgctcaaacagaaagccttccgaaccggtacaagcaccagg
ctggacgaccgtgtgtttgccatgtgtcagctgaagtaccagcccctggcctacgtcatg
ctgatgatccacccagcgctgtaccgcgtggacgacttgactgacgagggagccctgaac
atcagtgagcgtgccatcccccagcccagagtccagcagctgtctgtggagaagctgagc
agagagggggccttcctcatggatgctggctcggtgatctatctctggatcggaagaaac
tgcaaccccgacttcctcacgcaagtcctgggggtcccagactacgctgctgtgcctcag
aacatgaaccttctcccagagttggacactgcagagtcccagagaaccagagcgtttgtt
ggctggctgagggaacagaggccctttttccccatcctgcatgtcattagggatgagagc
ccactgaaagccagctttatgcagaacatgattgaggatcggacagagtcggccctgtct
tactatgagtttttactccacgtccaacagcaagtctccaagtaa
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