Oncorhynchus tshawytscha (Chinook salmon): 112246636
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Entry
112246636 CDS
T05605
Name
(RefSeq) PDZ and LIM domain protein 5 isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112246636
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112246636
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
112246636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PDZ_2
Motif
Other DBs
NCBI-GeneID:
112246636
NCBI-ProteinID:
XP_042176221
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Position
LG04:9236356..9374150
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AA seq
804 aa
AA seq
DB search
MSSNYSVSLLGPAPWGFRLQGGKDFNMPLTISRLTDLGKAAKARIAVGDVVLSIDGISTD
GMNHLEAQNKIKACAGNLNLTLQRASTVPKPPVAPKVEPSEILKPVAIISHHPHPHHHPT
EPTSLIPSAPHNKTARPFGGCGREDRDSPIARSPHSAFIPSASSAFTPATLARTPPPPQP
LFPFSSCSSPPSLPAAPQPSVYNTPFNLYSNENACEVAMGQRRGLTESQGGAVQLNGVPR
KPILETDIEFYHVPSHGDASKKRLMEDTEDWRPRSGTTQSRSFRILAQITGTEHQQTQES
DAENKTNSSLLTPLEGDGDLGEIQAIGSDWEASDVHHSDDSSATDQIHTAPLSPIHSSSP
VQPLTHLSPVSAVQPLLSPKPVRYGNHTNLLYPNVLISVKSAGLFPLFYGCRRELLLNPL
EFLPRGGPCPPALTPSAPTLAIRSHSTVIGLQARTPHRSPEGTVSQSLLDALLITPITTL
PPLRLRKKKRRSVSALHLPNNKRVSWHQSVTDLGDPNLSSPVNAVYIFSEEVEEPDTSSH
MLSAVKTMTKGPAGSPSNSITFTTTQGSGFPKPGLQTCFGVRGNGTTNVLPKGPVPERPA
PQPHPKDQDTLVQMAEHIPAGTRTPMCGHCNMDIRGPFLVAMGKSWHPEEFNCAHCRTSL
ADIGFVEEQGSVYCEHCYEDFFAPSCSRCQMKILGEVINALKQTWHIHCFLCASCQQPIR
NNTFHLEDGEPYCERDYYSLFGTGCHGCEFPIEAGDKFLEALGFTWHDTCFVCVICCTTL
EGQAFFSKMDKPLCRKHAHSVVKI
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtaactacagtgtgtccctgcttggcccggccccatggggcttcagactgcag
ggtggaaaagacttcaacatgccactcaccatctccaggctcacggacctgggaaaggca
gccaaggcacgtattgcagtgggcgatgtggtcctgtctatcgatggcatcagtactgat
ggaatgaaccacctggaagctcagaacaagatcaaggcctgcgccggcaacctcaacctc
accctgcaaagagcctccaccgtcccaaaacctcccgtggccccgaaggtcgagccatca
gagatccttaagcctgtggctattatcagccaccacccccacccccaccaccatcccact
gagcccaccagtcttatccccagcgccccacacaacaaaactgcccggccctttgggggc
tgcgggagagaggacagggactcccccatcgcacgctccccccattccgccttcattccc
tctgcatcctctgccttcacccccgccaccctagcccgcactcctcctccaccccagccc
ctcttccctttctcctcctgctcctcacccccctccctccctgccgcaccccagccctct
gtctataacacgcccttcaacctctactccaacgagaacgcctgcgaggtggccatgggc
cagaggcggggactaacggagagccagggaggagctgtgcagttgaacggggttcctagg
aagcccattctggaaacagacattgagttctaccacgtgccttctcatggagacgccagc
aagaagcgcctgatggaagacacagaggactggcgtccccgcagtggcaccacccagtcc
cgctccttccgaatcctggcccagattactggcactgaacaccagcaaacacaggagagc
gatgcggagaacaagacaaacagttcccttttgacaccactagagggcgatggtgaccta
ggggagattcaagccattgggtcggattgggaagctagtgatgtccatcacagtgacgac
tcctctgctacagaccaaatacatacggctcctctctcacctattcacagctcctctcca
gtacagccactgacacatctttctcctgtgtctgcagtacagccactactctccccaaag
ccagtgaggtacgggaatcataccaatctactctatcccaatgtccttatcagtgtaaag
tctgctggcctctttcctctgttctatgggtgcaggcgagagctcctgttgaacccactg
gagttcctccctcgaggtggtccctgcccaccggccctcacccctagtgcaccgactctg
gctatacggtcccattctactgttattggtttacaggccagaaccccacacaggtcacct
gaggggacggtctctcagtccctattggatgccttgctcattacgcctatcaccaccctc
ccgcccctccgcttgaggaagaagaagcgtcggagtgttagtgccttacacctgcccaac
aacaagagagtctcctggcaccaatcagtcactgatctgggtgaccccaacctctcctct
cctgtcaatgctgtctatatctttagtgaggaggtggaggagccagacaccagttctcac
atgttgtctgcagtcaagaccatgaccaaaggacctgctggcagccccagcaactccatc
acctttaccaccactcagggttcaggtttccctaaaccaggccttcagacatgttttggg
gtgagggggaacggcaccaccaatgttctccctaagggccctgtcccagagaggccggcc
ccccagccccatcccaaagaccaggacactctggtgcagatggccgaacacattcccgca
gggacacgcacgcccatgtgtggccactgcaacatggacatcagaggcccattcctggtg
gccatgggaaagtcctggcaccccgaggagtttaactgcgcccactgccggacctccctg
gcagacattggcttcgtggaggagcaaggctcggtctactgtgaacactgctatgaggac
ttcttcgcaccttcctgtagccgctgccagatgaagatccttggggaagtgatcaatgcc
ctgaaacagacctggcacatccattgtttcctgtgtgcatcgtgccagcagcccattagg
aacaacacctttcacctggaggatggagagccctactgtgaaagagactattactccctt
tttggtaccggttgccatggttgcgagttccccatagaggcaggggacaagttcttggag
gctttgggcttcacctggcatgacacctgttttgtgtgtgtgatctgctgcaccactctg
gaaggtcaagccttcttctccaaaatggacaagcctttgtgcaggaaacatgcacatagt
gtggtgaaaatctga
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