Oncorhynchus tshawytscha (Chinook salmon): 112246661
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Entry
112246661 CDS
T05605
Name
(RefSeq) nipped-B-like protein A
KO
K06672
cohesin loading factor subunit SCC2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
112246661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112246661
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
112246661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
HEAT
HEAT_EZ
Cnd1
Cnd3
Bacillus_HBL
Motif
Other DBs
NCBI-GeneID:
112246661
NCBI-ProteinID:
XP_042176215
UniProt:
A0AAZ3NSU8
LinkDB
All DBs
Position
LG04:8947034..8995137
Genome browser
AA seq
2536 aa
AA seq
DB search
MNGDMPHVPITTLAGIASLTDLLNQLPLPSPLPATTTKSLLYNGRIAEEVNCLLACRDEN
LVSQLAHGLNQVSTEHIELKDNLGSDEPEGDVPALLQTVLSRNPGIFREKNVMQQPMVQQ
YKPIQNSMHGSPAQSANFQQASMSPNPSSRGFVSPQSSSGGRFIPQQNSPVPSPYTPQSP
AGFMQYPHPPSYNQHQQIQQASPMVPGGMRNIHESKGPMTNAAHHHPDRQEDYMSIVHRL
GNEESDPSMRNASFPLRSPQPGCSPVGNEGTPKAGSRPPLILQSPPYMSPREGPPDLLLE
SPDQRKKQQKKKLVGKEDKDAYDIVTSPSKDTTKLTLSLSRVKSEEVEDPSGELLPVMMD
QNSDLEGELGCQQVPVLQNVGVIKGQEGPLSSPFDEAELDALAEIERIERESASERERCS
KEVQDKDKPLKKRKQDSFPLEPGAGGTAGTTGAPGSGGGGNAGKLIPQEATAAGNGASRP
ALMVSIDLQQAGRADGQLDPCMAAPIPALEAQRWPEEPAEGPAAEGSDTAGVLRLKADNR
PEVIKNSMDKHDNHREPSRHRHDGKQDRRPDTPKSSSREHGRDRERRHRNEDRRSPEERY
RPDSPRVKQEGRGGGFDPSGRPRGDRPGFRSPSGGETVRNRPDGLKQLQPERKSGDFPAY
LLGGQGSGGLKNFVIPKMKRDGGAVDVAEGWGQPRVKLERLGVRGLVDHISKRPKPVVVL
QKLSFDEVQRIIRVKDRHGSKSGKNRFLSGKSDKGGLDQSVLEELPPELLAEMESTMPLC
ERVKMNKRKRSSVKEKPKYTEVDSDDDSNGESARKRQRKNRGDKAWEYEPERERRGSGDH
RRSKGFQEGCRGSNSCYRDSSDEESPPPSMSDIARQMKKKENQKKRKAYEPKLTHQELMD
SSTFKRFSSSVDNILENLEDVDFTQMDDDEIPQELLLGKQQLNELGSESAKIKAMGITCR
IPSDKLVKVLNILEKNIQDGARLSTLMSHDNDEDEEKLWRDLIMERVTKSADACLTALNI
MTSAHMPKAVYMEDVIERVLQYTKFHLQNTLYPQYDPVYRVDPHGGGLLSSKAKRAKCST
HKQRVIVMLYNKVCDMVSNISELLEIQLLTDTTILQISSMGITPFFVESVSELQLCAIKL
VTAVFSRYEKHRQLILEEIFTSLARLPTSKRSLRNFRLNSSDRDGEPMYIQMVTALVLQL
IQCVVHLPNDRDGMEDEYDSKVDQDLLITNNYETAMRTAQNFLSVFLKKCGSKQGSEEDY
RPLFENFVQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKQTEMTLRVASLDYLGTVAA
RLRKDAVTSKMDQRSIDRILKETQGDDETQQLQKALLDYMEENTETDPSLLFARKFYIAQ
WFRDTTIETEKTMKSQKRDREEDSSDGPGHHAKDIETIGEVMQRAEARKKFLRKIIKTVP
SHFTTLRMNSDTVDYDDSCLIVRYLASMRPFAQSFDIYLTQILRVLGESAIAVRTKAMKC
LSEVVSVDPSILSRLDMQRGVHGRLMDNSTSVREAAVELLGRFVLSRPQLTEQYYDMLIE
RILDTGISVRKRVIKILRDICLEQPTFNKITEMCVRMIRRVNDEEGIKKLVNETFQKLWF
TPTPAHDKDTMTRKILNITDVVTACKDTGYDWFEQLLQNLLKVEEDAAYKPAQKACVQLV
DNLVEHILKYEESLTESKGVNSTRLVSCITTLFLFSKIRAQLIVKHAMTMQPYLTTKCNN
ASDFMVICNVAKILELVIPLLEHPSETFLTTIEEDLMKLIIKYGMTVVQHCVSCLGAVVN
KVTHNYKFVWSCFNRYYGALTKLKTQHQEDPNSTALAANKPALLRSLFTVGALCRHFEFD
MEEFKGITKVVIKEKVLELLLYFTKHEDEEVKTKAIIGLGFLVIMHPSQMFSPEVKTLYN
GILADRSTSVNLKIQVLKNLQTYLQEEDSRMQEADQQWKKLSKQEDLKEMGDISSGMSSS
IMQLYLKQVLEAFFHTQSSVRHFALNVIALTLNQGLIHPVQCVPYLIAMGTDPEPSMRNK
ADQQLVEIDKKYTGFIHMKAVAGMKMSYQVQQAIMASRKSIIRGFRHDETTSALCAHLFS
MVRGNRQHRRAFLISLLNLFDDSSKTEVNMLLFIADNLACFPYQSQEEPLFIMHHIDITL
SVSGSNLLQTFKESLLKEPRRREPKVRKERLSKNGSGGEEDEDKEICDSPRSDENSNPDD
DDEVVRRPKKSKRPVAVEEPSSESDLDLEDLDVEDVDRVMRRLPENATSLLDFANASQGI
LLLLVLKQHLKNLYSFSDSKIQKYSPTESAKVYDKAVNRKTNIHFKPRQTIDFLSNNWAN
VVFTHDIKTRIVKQYLDFKTLMEHLDPDEEDEEGEAAQASANIRNKAINALLGGAGHGHL
APVEYDEDDESEEDERNPGSSRRARRSGDPGNLNESLDSMDVIAIHCPKHKDRPQLARVI
QKISTGYSVHWMSGSYSGPWADAKKRDGRKTVPWVDTIKESDIIYKKIALTSNHKLSNKM
AQTLRSLYAAKEGTSS
NT seq
7611 nt
NT seq
+upstream
nt +downstream
nt
atgaatggggatatgcctcatgttcccatcaccactcttgctgggattgctagccttaca
gacttgttgaatcagctacccctgccctctcctctcccagccaccaccaccaaaagcctg
ctctacaatgggaggatcgcagaggaggtcaactgcctgctggcctgccgggacgagaac
ctggtctcccagctggcccacggtcttaaccaggtttccacagagcacatagagctgaag
gacaacctgggcagtgatgagccagagggcgacgtgccggcgctgctgcagacggtgctg
tccaggaaccccggcatcttcagggagaaaaatgtcatgcagcagccgatggtgcaacag
tacaaaccaatacagaattccatgcatggcagcccagcccagtcagcaaactttcagcag
gcttcaatgtctcctaatccatccagccggggatttgtctccccacagtcgagctcaggg
ggtcggttcatcccccagcagaacagccctgtgcccagcccatacactccccagagccca
gctgggttcatgcagtaccctcacccccccagctacaatcagcaccaacagatacagcaa
gccagccccatggtccctggaggcatgaggaacatccatgagagcaagggaccgatgacc
aacgctgcccaccatcacccagacagacaggaggactacatgagtatagttcacagactg
gggaacgaggagagtgacccctccatgagaaacgcctcgttccctctgaggtcgcctcag
cctgggtgctcacctgtgggaaacgaaggaacacccaaagctggctcaaggccgccactc
atccttcagtctcctccgtatatgtctccccgggaaggccccccggacctgctactggag
tctcccgaccagaggaagaaacagcagaagaagaagctggtgggcaaagaggacaaggat
gcgtacgacatcgtcacctcgccctccaaggacaccaccaagctgacgctgtcgctgtca
cgggtgaagtcggaggaggtggaggacccctctggtgagctgctgccagtcatgatggat
cagaactctgacctagagggcgagcttgggtgccagcaggtccctgtgctgcagaacgtg
ggggttattaaagggcaggagggccctctctcgtcaccttttgatgaggcggagctggac
gccctggcggagattgagaggatagagcgtgagtcggccagtgagagggagcgctgctcc
aaagaggtgcaggataaagacaagcccctgaagaagcgaaagcaagactcgtttccactg
gagcctggagcagggggcacagcaggcaccaccggtgcgccaggcagcggaggagggggc
aatgcaggcaaactgatcccccaggaggctacagcggcaggaaacggagctagcagacca
gccctcatggtcagcatcgacctgcaacaggcgggccgggccgacggccagcttgaccct
tgcatggctgcgcccatcccggccctggaggcacaacgctggcccgaggagcctgccgag
ggccctgcagccgaaggatccgacacggccggggtgctccggctcaaagccgacaatcga
cccgaggtcatcaagaacagcatggacaaacacgacaaccaccgtgagccatccaggcac
cggcatgacggaaagcaagaccggcgccctgacacacctaagtcatcgagcagagagcac
gggcgggaccgggagaggcggcacaggaatgaagacaggcgctcgccagaggagcgctac
cggccggacagccccagggtcaaacaggagggccgtggaggtggctttgaccccagtggg
cggcctcggggcgacagacccggcttcaggtcccccagcggaggagagacggtcagaaac
cgcccagatggactcaaacaactacagcctgagagaaagtcaggagacttccctgcttac
ctgctgggggggcaagggtctgggggtctgaagaactttgtgatccccaagatgaagcgg
gacggcggagctgtggacgtggcagaaggctggggccagccccgggtcaagctggagcgg
ctgggggttcgggggctagtggaccacataagtaagagacccaagcctgtcgtggtgctg
cagaagctctcttttgatgaggtgcagaggatcatcagggttaaggaccgtcacggctcc
aagtctggcaagaacaggttcctctcaggaaagtcagacaaaggtggactagaccagtct
gtgctggaagagcttcctcctgaactgttggcggagatggagtccaccatgccactgtgc
gagagggtgaagatgaacaagcgtaagcggagttcggtcaaagagaagcccaagtacacc
gaggtcgactcagacgacgattccaacggggaatctgccaggaagcgccagaggaagaac
cggggggacaaggcctgggagtatgagccggagcgggagaggaggggctctggagaccat
aggcggagtaagggcttccaagagggatgcagaggctcaaacagctgctaccgggactct
tctgatgaggagtcgcccccacccagcatgagtgacatcgccaggcagatgaagaaaaaa
gagaaccagaaaaagagaaaagcctatgagcccaagctcactcaccaggaactgatggac
tcgtccacattcaaaagattctcctccagtgttgacaacatcctagagaatctggaggat
gtggactttacgcagatggacgacgatgagatcccacaggagctgctgctgggtaaacag
cagttgaacgagctgggcagcgagtcggccaagatcaaggccatgggcatcacctgcagg
ataccgtcggataagctggtgaaggtactgaatatcctggagaaaaacatccaggatggg
gccaggctctcgacactcatgagccacgacaacgacgaagatgaggagaagctgtggcga
gacctcattatggagcgtgtgaccaagtcggccgacgcctgtctgacggccctcaacatc
atgacgtccgcccacatgcccaaggcggtatacatggaggacgtgatcgagagggttctc
cagtacaccaagttccacctgcagaacaccctctacccccagtacgaccctgtctatagg
gtggaccctcacggaggtggcctgctgagctccaaggccaagcgggccaagtgctccacc
cacaagcagcgggtcattgtcatgctgtacaacaaggtgtgtgacatggtcagcaacatc
tctgagctgctggagattcagctgctcaccgacaccaccatcctccagatctcctcaatg
ggcatcaccccattctttgtggagagtgtcagtgagctgcagctgtgtgccatcaagctg
gtgacggcggtgttctcccgctatgagaagcacaggcagctgattctggaagagatcttc
acatctctggccagactgcccaccagcaaacgcagtctccgcaacttcaggctgaacagc
agcgacagggacggcgagcccatgtacatccaaatggttacagccctggtgctacagctc
attcagtgtgtggtacacctcccaaacgaccgcgacggcatggaggacgagtacgacagc
aaggtagatcaggacttgctgatcaccaacaactacgagacggccatgaggacggcccag
aacttcctctcggtgttcctcaaaaagtgtggcagtaagcaggggagcgaggaggactac
aggcctctgtttgagaactttgtccaggacctgctctccacggtcaacaagccagagtgg
cccgctgccgagctactgttgagcctgttaggcagactgctggtgcaccagttcagtaac
aagcagacggagatgaccctgagggttgcctccctggactatctaggcacggtggccgct
cgcctgcgcaaagatgccgtcaccagcaagatggaccagcgatccattgaccgcatcctg
aaagagacccaaggtgacgacgagacccagcaactgcagaaagcccttctggactacatg
gaggagaacacagagaccgacccttcactattgtttgccaggaagttctacatagcgcag
tggttccgcgacaccaccatagagaccgagaagaccatgaagagccagaaacgggaccgg
gaagaggactcgtcggacggccctggccaccacgccaaggacatcgagaccattggggag
gtcatgcagcgggccgaggcacgcaagaagttcctccgcaagatcataaagacggtcccc
tcccatttcaccaccctgagaatgaactctgacacggtggactacgacgactcctgtctc
atcgtccgctacttagcctccatgaggccgttcgcccagagctttgatatttacttaacc
cagatcttgcgagtcctgggggagagtgcaatcgctgtccggacaaaagccatgaaatgt
ctgtctgaggtggtttctgtggatcctagcattctttccaggttggacatgcagcgcgga
gtgcatggccgtctgatggacaactccaccagcgtgcgcgaggcggccgtggagcttctg
ggccgcttcgtgctgagccgaccccagctcactgagcagtactacgacatgcttatcgag
aggattctggacacgggcatcagcgtgaggaagagggtgattaagatcctgagagacatc
tgtctggagcagcccaccttcaacaagattacagagatgtgtgtgaggatgatccgtcga
gtcaacgacgaggagggcattaagaaactagtcaacgaaacattccagaagctgtggttc
accccgaccccggcccacgacaaagacactatgaccaggaagattctcaacataacagac
gtggtcacggcatgcaaagacacgggctacgattggttcgagcaactccttcaaaatctg
ttgaaagtggaggaagacgctgcctacaaaccggcccagaaggcttgtgtgcagctcgtg
gacaatcttgtggagcacatcctcaaatacgaggagtctcttacagaaagtaaaggggtg
aactccacccgcctggtgtcctgcatcaccactctcttcctgttcagcaagatccgggct
cagctcatcgtcaaacacgccatgaccatgcaaccctacctgaccaccaagtgcaataat
gccagcgacttcatggtgatctgtaacgtggccaagatcctggagctggtgatccctctg
ttagagcacccctctgagaccttcctcaccaccatagaggaagacctgatgaaactcatc
atcaaatacggcatgacggttgtccaacactgtgtcagctgcctcggtgccgtggtcaac
aaggtgacccacaactataagtttgtgtggtcttgctttaacagatactacggtgctctg
accaagttgaagacgcagcaccaggaagatcccaacagtacagctctggctgccaacaag
ccggccctcctgcgctccctcttcaccgtgggagccttgtgtcgacactttgagttcgac
atggaggagttcaagggcatcaccaaggtggtaatcaaagagaaggtgctggagctgctg
ctctactttaccaaacatgaggacgaggaggtgaagaccaaggctatcatcggcttaggc
ttcctggtgatcatgcaccctagccagatgttttccccggaggtgaagaccctgtacaac
ggaatcctggccgacaggagcacctcggtcaacttgaagatccaggtgttgaagaacctg
cagacctatctgcaggaggaggactcgcgcatgcaggaggctgaccagcagtggaagaag
ctgtccaagcaggaggacctgaaggagatgggggatatctcatcgggcatgagcagttcc
atcatgcagctgtacctcaagcaggtgctggaagctttcttccacacccagtccagcgtg
cgtcactttgccctcaacgtcatcgcactcaccctcaaccagggcctcatccaccccgtg
cagtgtgtaccgtatctcatcgccatgggaacggaccccgagcccagtatgagaaacaaa
gcggaccagcagttggtggagatcgacaagaagtacaccggattcattcacatgaaggca
gtggctgggatgaagatgtcctaccaggtgcagcaggccatcatggcgtcccgcaagagc
atcatccgaggcttccggcatgacgagaccacctcggccctctgcgcccacctcttctcc
atggtccgagggaaccggcagcaccggcgagccttcctcatctccctgctcaacctgttt
gacgacagctccaagactgaagtgaacatgctgctgttcatagccgacaacctggcctgt
ttcccctaccagagccaggaggagcccctcttcattatgcaccacatagacatcacactg
tctgtgtccggcagcaacctgctgcagaccttcaaagagtctctgttgaaggagccgcgg
cgccgcgagcccaaagttagaaaggagcgcctgtcaaagaacggctctggtggggaggag
gatgaggacaaggagatctgtgactcacccaggagcgatgaaaactcaaaccctgatgat
gacgatgaggtggtgcggcggcctaagaagtccaagaggccggtggccgtggaggaaccc
agctcggagtcggatttagacctggaagacctggacgtggaagatgtggaccgggtgatg
cggcgactgcctgagaacgccacgtcgctcctggactttgccaacgcctcgcagggcatc
ctgctgctcctcgtgctcaaacagcacctcaagaacctttacagcttctcagacagcaaa
atccagaagtactcgccgactgagtcagccaaagtgtacgacaaggcggtgaacagaaag
acaaacatccacttcaagccccgacagaccatcgacttcctgtccaacaactgggccaac
gtggtgttcactcacgatatcaagacgaggatagtcaagcagtacctggatttcaaaacc
ctgatggaacacttggacccagacgaggaggacgaggagggcgaggcggcacaggccagc
gccaacatccggaacaaagccataaacgcactgcttggaggggccggccacgggcatctt
gcaccagtagagtatgatgaggatgacgagagtgaagaagatgagagaaaccctgggtcc
tctcggcgggcgagacgttcgggggaccccgggaacctcaacgagagcttggactctatg
gacgtcatcgccatccattgccccaagcacaaggaccgtccgcagctcgcccgggtcatc
cagaagatcagcacaggctacagcgtgcactggatgtccggctcctactctggcccctgg
gccgacgccaagaaacgggacggacgcaaaacggtgccttgggtggacactattaaggag
tctgacatcatttacaaaaaaatcgccttgaccagtaaccacaaactgagtaacaaaatg
gcgcagactttacggtcactgtacgctgccaaggaggggacttccagttaa
DBGET
integrated database retrieval system
