Oncorhynchus tshawytscha (Chinook salmon): 112246804
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Entry
112246804 CDS
T05605
Name
(RefSeq) gamma-aminobutyric acid receptor subunit beta-1-like isoform X1
KO
K05181
gamma-aminobutyric acid receptor subunit beta
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04080
Neuroactive ligand-receptor interaction
otw04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
112246804
04082 Neuroactive ligand signaling
112246804
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112246804
Ion channels [BR:
otw04040
]
Ligand-gated channels
GABA-A
112246804
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GFIT
Motif
Pfam:
Neur_chan_memb
Neur_chan_LBD
Motif
Other DBs
NCBI-GeneID:
112246804
NCBI-ProteinID:
XP_024271109
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Position
LG08:complement(24905911..24958578)
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AA seq
486 aa
AA seq
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MCTALDRGRWGIFCLFLMVAMVCGAQSANEQSNMSFVKATVDKLLKGYDIRLRPDFGGAP
VDVGMSIDIASIDMVSEVNMDYTITMYFQQSWRDKRLSYTGIPLNLTLDNRVADSLWVPD
TYFINDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIE
SYGYTTDDIEFYWKGDNSVTGVENIELPQFSIIDYHIQSTKAVFATGSYPRLSLSFKLKR
NIGYFILQTYMPSTLITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIP
YVKAIDIYLMGCFVFVFLALLEYAFVNYIFFGRGPHLQKKVAEKAAQTNNENKSRLESNK
VQVDAHGNILLTNLEIRNEMGGMGGMAGMTGAEMIGALNDPRATMFSYDSASIQYRKPMA
SRDLYGRPALDRPVGHKKSRLRRRASQLKVKIPDLTDVNAIDKWSRVIFPIAFTFFNLVY
WLYYVH
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtgcacggctttggaccgcggacgctgggggattttttgtcttttcctcatggtcgcc
atggtctgcggcgctcaaagcgccaacgagcaaagcaacatgtcatttgtgaaagcgacc
gtcgacaaactgctgaaggggtatgacattcgtctgaggcctgattttggaggtgcccct
gtggacgttggcatgagcatagatatcgccagtatcgacatggtttcggaagtcaacatg
gattacaccatcactatgtacttccaacagtcctggagggacaagcgcttgtcctacaca
gggattcccctcaacctgacactggacaacagggtggcagactcactctgggtccctgac
acctacttcatcaatgataagaagtcctttgtgcacggggtcacagtgaagaacagaatg
atccgacttcatcctgacggaactgtgctctacggcctcaggatcaccactactgcagct
tgcatgatggacttgcgtagatacccactggatgagcagaactgcaccctggagatcgag
agctatgggtacaccactgatgacatcgagttctactggaaaggtgataattcagtgact
ggggtggagaacatcgaactgccccaattctctataatagactaccacatccaatccaca
aaagcagtgtttgctacaggctcctacccgaggctctctctgagttttaagctgaagagg
aacattggctacttcatcctacagacctacatgccctcgaccctgatcaccatcctatcc
tgggtctccttctggatcaactatgacgcgtctgcggccagagtcgctttaggcataacc
actgtgctgaccatgaccaccatcaacacccacttgagagagactttacccaaaatcccc
tacgtcaaggctatagacatctacctgatgggctgcttcgtgttcgtcttcctcgctctg
ctggagtacgcctttgtcaactacatcttcttcggacgggggcctcacttgcagaaaaag
gtggcagagaaagcagctcaaaccaataacgaaaataagagccgattggagagtaacaaa
gtgcaggtggacgcccacggcaatatcctcctgaccaatctggagatccgtaacgagatg
ggcgggatgggtggcatggccgggatgaccggggctgaaatgataggggctctcaacgac
ccacgggccaccatgttttcctacgacagcgccagcatacagtaccgtaagcccatggcc
agccgagacctgtacggtcgaccagccctcgaccggccagtcggccacaagaagagtcgt
ttgaggaggagggcatcgcagctcaaagtcaagatccctgacctgacggacgtcaacgcc
atagacaagtggtcccgtgtcatcttccctatcgccttcaccttcttcaacctggtctac
tggctgtactacgtccactag
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