Oncorhynchus tshawytscha (Chinook salmon): 112246891
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Entry
112246891 CDS
T05605
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04142
Lysosome
otw04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112246891
04142 Lysosome
112246891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112246891
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112246891
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
112246891
Exosome [BR:
otw04147
]
Exosomal proteins
Proteins found in most exosomes
112246891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
Coatomer_WDAD
Motif
Other DBs
NCBI-GeneID:
112246891
NCBI-ProteinID:
XP_024271250
LinkDB
All DBs
Position
LG30:complement(21887838..21939189)
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AA seq
1694 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQRWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPATG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNNLFAGGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAI
LGNQMFTNYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIV
NFSQDLEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKSLILVVRGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPY
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRRDPDLWASV
LLESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VVQAADQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEEAHLWAELVFLYDKYEEFDNAIITMM
NHPTDAWKEGQFKDIITKVANVELYYKATQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFF
SKVKQLPLVKPYLRSVQNHNNKSVNEALTNLFITEEDYQALRTSIDAYDNFDNISLAQRL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDTELAEELLGWFLT
EDKKECFAACLFTCYDLLRPDVVLETAWKHNIMDFSMPYFIQVMREYLFKVDAIKEKVDK
LETSESLRKEEEQATETQPIVYGPDNLVNGTPQLMLTAGPSVPVPPQQAYGYGYQAPAGY
PQAPQAQPGFGYGM
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatcctgcctattcgctttcaggagcacctgcagctccagaacttgggcatt
aacccagccaacattgggttcagcaccctgacgatggagtctgataagttcatctgtatc
cgggagaaggtgggcgagcaggcacaggtggtgatcatcgacatggccgaccccaacact
cccatccgcagaccaatctctgcagacagcgccatcatgaaccctgcctccaaagtcatt
gcacttaaagacgctgccaaaacccttcagatctttaacattgagatgaagagcaagatg
aaggcccacaccatgactgatgacgtcaccttctggaagtggatctccctgaacacagtg
gcacttgtgactgacaatgccgtctaccattggagcatggagggggactcccagccaatc
aaagtctttgaccggcactccagcctggcgggctgtcaaatcatcaactaccgcactgac
gccaagcagagatggttgctgctcattggcatctccgcacagcaaaaccgtgtggtggga
gccatgcagctgtactctgtggacaggaaggtgtcccagcccatcgagggccacgccgcc
ggcttcgcacagttcaagatggagggcaacacagaggagtccacactgttctgctttgct
gtgagaggacaggctgggggaaagttgcacatcattgaggtgggcaccccagccacaggg
aaccagccttttccaaagaaagcagtggatgtgttcttccctccagaggctcagaatgac
ttcccagtggccatgcagataagctccaagcaggatgtggtgttcctcatcaccaaatat
ggctacatccacctgtatgacctggagactggcacctgcatctacatgaacaggatcagc
ggagagaccatctttgttacggcccctcacgaagccactgccggcatcattggggtcaac
aggaaaggacaggttctgtcagtgtgtgtggaggaggagaacatcatcccttacatcacc
aatgtgctgcagaacccagaccttgccctgcgcatggccgtccgtaacaacctggccggg
gccgaggagctgttcgcgcgcaagttcaacaacctgtttgccggcggaaactactctgaa
gctgccaaggtggccgccaacgcaccaaagggcatcctgcgtactccagacaccatccgt
aagttccagagtgtgccagcccagccgggccagacctctcccctgctgcagtactttggc
atcctgctggaccagggccagcttaacaagtttgagtctctggagctgtgcaggcccgtc
ctacagcagggacgcaagcagctgctggagaagtggctcaaagaggacaagctggagtgt
tctgaggagctgggggacctggtgaagtcagtggaccccaccctggctctctccgtctac
ctgagggccaatgtacccaacaaggtcatccagtgcttcgctgagaccggacagttcccc
aagatagtcctgtacgccaagaaggtgggctacactccagactggatcttcctgctgagg
aacgtgatgaggatcagtccagaacagggcctgcagttctcccagatgctggtccaggac
gaggagcctctggctgacatcacacagatcgtggatgtctttatggagtataacctgatc
cagcagtgtacctccttcctattggacgccctgaaaaacaacaggccttctgaggggccg
ctgcagacacgccttctggagatgaatctcatgcacgccccacaggttgctgatgccatc
ctgggcaaccagatgttcaccaactacgaccgtgcccacatagcccagctgtgtgagaag
gctggtctgctgcagagagctttagagcactacactgacttgtacgacatcaaacgggcc
gtggtgcacacacaccttctcaacccagagtggctggtgaacttctttggctccctctca
gtggaggactctctggagtgtctgagggccatgttgtctgccaacatccgtcagaacctg
cagatctgtgtccaggtggcttccaagtaccacgagcagctctccaccaactctctaacg
gagctcttcgagtccttcaagagtttcgagggtctgttctacttcctgggttccattgtt
aacttcagccaggacctagaggtccacttcaagtacatccaggcagcctgcaagacggga
cagatcaaagaggtggagaggatctgcagagagagcaactgctacgaccccgaacgagtc
aagaacttcctcaaggaggccaagctgaccgaccagctcccactcatcattgtgtgtgac
cgcttcgactttgtccatgacctggttctctacctgtaccgtaacaacctgcagaaatac
attgagatctatgtgcagaaagtgaaccccagccgtctaccagtggtgattggagggctt
ctggacgtggactgttctgaggacgtcattaagagtctgatcctggtggtcagaggacag
ttctccactgatgaactggtggctgaggtggagaagaggaaccgactgaagcttctcctc
ccctggctggaggcccgtatccatgagggctgtgaggagcctgctacccacaatgccctg
gccaagatctacatcgacagcaacaacaaccccgagcgcttcctgcgtgagaacccctac
tacgacagccgcgtggtgggcaagtactgcgagaagagggacccccacctggcctgcgtt
gcctacgagagaggacagtgtgaccaggaactcatcaacgtgtgcaatgagaactccctg
ttcaagagtctgtctcgctacttggtccgtcgcagagacccggacctgtgggccagcgtg
ctgctggagagcaaccccttcagaagaccactcattgaccaggtggtgcagacagccctg
tctgagacccaggacccagaggaggtgtcagtcacagtaaaggccttcatgactgcagac
ttgcccaacgaactcattgagctgttggagaagatcgtactggataactctgtcttcagt
gaacacagaaatctgcagaacctgctgatcctgacggccatcaaggcagaccggacccgt
gtgatggagtacatcaaccgcctggacaactatgacgccccagacattgccaacattgcc
atcagcaacgagctcttcgaggaggcctttgctatcttcaagaagtttgacgtcaacacc
tctgccgtgcaggttctcattgagcacattgggaacctggatcgagcctatgagtttgcc
gagcgctgcaacgagccagctgtgtggagccagctggccaaggctcagctgcagaagggc
ctggtcaaggaggctatcgactcctacatcaaggctgacgacccctctgcctacatggag
gtggtacaggccgccgaccagagtggtaactgggaggacctggtgaagttccttcagatg
gcccgtaagaaggcccgggagtcctatgtggagacagagctcatcttcgccctggccaag
accaaccgcctggctgagctggaggagttcatcaatggacccaacaatgcccacatccaa
caggtcggcgaccgctgttacgatgagaaaatgtacgacgcggccaagttactgtacaac
aacgtgtccaactttggccgtctggcgtccaccctggtgcacctcggggagtaccaggcg
gctgtggacggggcccgcaaggccaacagcactaggacctggaaggaggtgtgctttgcc
tgcgtggatggaaaggagttccggctggcacagatgtgtggcctccacatcgtggtgcat
gctgacgaactggaggagcttatcaactactaccaggaccgtgcttactttgaggagctg
atcaccatgctggaggcagccctggggctggaacgggcgcacatgggtatgttcaccgag
ctggccatcctctactccaagttcaaaccccagaagatgagggagcacctggagctcttc
tggtccagagtcaacattccaaaggttctgcgggcggcggaggaggcccacctgtgggcg
gagctggtgttcctgtacgataagtacgaggagtttgacaatgccatcatcaccatgatg
aaccaccccaccgacgcctggaaggagggccagttcaaagacatcatcaccaaggtggcc
aacgtggagctgtattacaaagcaactcagttctatttggagttcaagccgttgttactg
aatgacctgctcatagtgctgtcccccagactggaccactcccgtgctgtcaacttcttc
agcaaggtgaaacagctgcccctggtcaagccctacctgcgctctgtacagaaccacaac
aacaagtctgtcaatgaagcacttaccaacctgttcatcacagaggaggactatcaggct
ctgaggacctctatagatgcctatgacaactttgacaacatctcgcttgcccagcgcttg
gagaaacacgagctgattgagttcaggaggatcgctgcttacctcttcaagggaaacaac
cgctggaaacagagtgtggagctctgcaagaaggacaaactctacaaggatgccatgcag
tacgcgtcagagtccaaggatacagagttggctgaggagctactgggctggttcctgacc
gaggacaaaaaggagtgctttgccgcatgcctcttcacctgttatgacctgctgaggcca
gacgtggtgctggagacggcctggaagcacaacatcatggacttctccatgccctacttc
attcaggtcatgagagagtatctcttcaaggttgatgcaattaaggaaaaggtggacaag
ctggagacctctgagtccctaaggaaagaggaggagcaggcgacagagacacaacccatc
gtctatggtcctgataacttagtaaatggcacaccccagcttatgctgactgctggccca
agcgtgcccgtgcccccccagcaggcctatggctacggttaccaggctcctgcaggctac
ccccaggcacctcaggcccaaccaggctttggctacggcatgtaa
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integrated database retrieval system
